Wall clock time and date at job start Tue Mar 31 2020 22:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86798 * 120.00048 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99685 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99866 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99859 * 3 2 1 7 7 C 1.38797 * 120.00292 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00246 * 180.02562 * 7 2 1 9 9 S 1.76204 * 119.99960 * 359.97438 * 7 2 1 10 10 C 1.81000 * 100.00077 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.46640 * 180.02562 * 10 9 7 12 12 O 1.21279 * 120.00233 * 359.97438 * 11 10 9 13 13 N 1.34780 * 119.99340 * 180.02562 * 11 10 9 14 14 C 1.46506 * 119.99719 * 179.97438 * 13 11 10 15 15 H 1.08997 * 115.51582 * 350.58276 * 14 13 11 16 16 C 1.53000 * 117.44219 * 205.16243 * 14 13 11 17 17 H 1.08999 * 119.52856 * 5.64679 * 16 14 13 18 18 C 1.54383 * 118.12429 * 160.68913 * 16 14 13 19 19 N 1.48555 * 104.59300 * 87.22826 * 18 16 14 20 20 C 1.46905 * 110.99719 * 200.95430 * 19 18 16 21 21 C 1.50700 * 109.47045 * 169.99859 * 20 19 18 22 22 N 1.30888 * 125.91527 * 274.69380 * 21 20 19 23 23 C 1.33547 * 109.78210 * 179.82779 * 22 21 20 24 24 O 1.35867 * 125.58702 * 180.17928 * 23 22 21 25 25 N 1.31067 * 108.82228 * 0.44362 * 23 22 21 26 26 N 1.34356 * 125.90805 * 95.00286 * 21 20 19 27 27 H 0.96993 * 126.77616 * 359.97438 * 26 21 20 28 28 C 1.48559 * 104.22353 * 320.51438 * 19 18 16 29 29 C 1.53001 * 117.44280 * 136.00170 * 14 13 11 30 30 H 1.09005 * 119.52482 * 355.91348 * 29 14 13 31 31 H 0.96998 * 119.99330 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46901 * 299.99874 * 10 9 7 33 33 H 1.08995 * 109.46756 * 60.00354 * 10 9 7 34 34 H 0.96995 * 120.00137 * 359.97438 * 13 11 10 35 35 H 1.09002 * 110.40840 * 206.00587 * 18 16 14 36 36 H 1.08998 * 110.40969 * 328.33003 * 18 16 14 37 37 H 1.08994 * 109.47329 * 289.99972 * 20 19 18 38 38 H 1.09003 * 109.46777 * 50.00876 * 20 19 18 39 39 H 0.96696 * 113.99919 * 270.28245 * 24 23 22 40 40 H 1.09004 * 110.40916 * 158.26675 * 28 19 18 41 41 H 1.09004 * 110.41110 * 280.70097 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0465 1.4001 5 1 1.4478 2.6527 -0.7001 6 1 3.5479 1.4402 -0.7000 7 6 2.0104 -1.2020 -0.0005 8 1 3.0904 -1.2020 -0.0001 9 16 1.1294 -2.7280 -0.0005 10 6 2.5160 -3.8914 -0.0005 11 6 1.9874 -5.3027 -0.0012 12 8 0.7912 -5.5023 -0.0011 13 7 2.8443 -6.3431 -0.0008 14 6 2.3305 -7.7151 -0.0008 15 1 1.2571 -7.8145 0.1598 16 6 3.2340 -8.8063 0.5770 17 1 4.1764 -8.5292 1.0494 18 6 2.5826 -10.1382 1.0072 19 7 2.5692 -10.9644 -0.2274 20 6 1.5671 -12.0345 -0.1339 21 6 1.4080 -12.6926 -1.4802 22 7 0.6261 -12.2839 -2.4470 23 6 0.7387 -13.1026 -3.4961 24 8 0.0730 -12.9750 -4.6736 25 7 1.5925 -14.0524 -3.2015 26 7 2.0399 -13.8039 -1.8936 27 1 2.6791 -14.3304 -1.3887 28 6 2.2229 -10.0033 -1.3060 29 6 2.9984 -8.7181 -0.9437 30 1 3.7772 -8.3774 -1.6261 31 1 -0.4849 -0.8401 0.0004 32 1 3.1246 -3.7313 -0.8905 33 1 3.1245 -3.7313 0.8895 34 1 3.8010 -6.1834 -0.0004 35 1 3.1795 -10.6208 1.7811 36 1 1.5667 -9.9670 1.3632 37 1 1.8934 -12.7750 0.5963 38 1 0.6123 -11.6117 0.1789 39 1 -0.7789 -13.4320 -4.6953 40 1 2.5489 -10.3844 -2.2738 41 1 1.1499 -9.8113 -1.3140 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001113897110.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:11 Heat of formation + Delta-G solvation = 61.781961 kcal Electronic energy + Delta-G solvation = -25479.311711 eV Core-core repulsion = 21524.293520 eV Total energy + Delta-G solvation = -3955.018191 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.75020 -40.58716 -38.93432 -37.90686 -35.75722 -33.22111 -32.77759 -32.54501 -31.35392 -29.33660 -28.82838 -27.41527 -24.87785 -23.59832 -22.81549 -21.44886 -21.19485 -20.65615 -20.50228 -18.93486 -18.35666 -18.07914 -17.25744 -16.75897 -16.54271 -15.81696 -15.63453 -15.21923 -15.00655 -14.61141 -14.38999 -13.91580 -13.85676 -13.58621 -13.23831 -13.10443 -12.94412 -12.51198 -12.46259 -12.40425 -12.18511 -12.07293 -11.86122 -11.77973 -11.02743 -10.91836 -10.67022 -10.43448 -10.41813 -10.20003 -10.06924 -9.64273 -9.59798 -9.06308 -9.03129 -8.81698 -8.24952 -6.69606 -6.63892 -4.02205 0.90187 1.81840 2.17176 2.69865 2.75813 2.85467 3.29805 3.37121 3.39457 3.44705 3.54536 3.57914 3.90154 4.13065 4.22527 4.29629 4.41548 4.53661 4.72924 4.81311 4.83463 4.88131 4.98347 5.08983 5.20824 5.24882 5.35488 5.39727 5.52889 5.56992 5.64174 5.71457 5.75751 5.85299 5.96897 6.11137 6.27919 6.42416 6.46849 6.95633 7.45892 7.49868 7.90656 8.40357 8.48510 9.25190 10.80090 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.023692 B = 0.001781 C = 0.001705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.563898 B =15719.687221 C =16416.516736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.035 3.965 3 Si 1.087 2.913 4 H -0.284 1.284 5 H -0.280 1.280 6 H -0.287 1.287 7 C -0.608 4.608 8 H 0.066 0.934 9 S -0.114 6.114 10 C -0.131 4.131 11 C 0.536 3.464 12 O -0.512 6.512 13 N -0.708 5.708 14 C 0.124 3.876 15 H 0.135 0.865 16 C -0.174 4.174 17 H 0.122 0.878 18 C 0.065 3.935 19 N -0.507 5.507 20 C 0.116 3.884 21 C 0.310 3.690 22 N -0.539 5.539 23 C 0.406 3.594 24 O -0.439 6.439 25 N -0.311 5.311 26 N -0.457 5.457 27 H 0.447 0.553 28 C 0.068 3.932 29 C -0.172 4.172 30 H 0.119 0.881 31 H 0.278 0.722 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.402 0.598 35 H 0.094 0.906 36 H 0.058 0.942 37 H 0.107 0.893 38 H 0.084 0.916 39 H 0.409 0.591 40 H 0.084 0.916 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.406 -30.260 0.906 31.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.176 4.176 3 Si 0.913 3.087 4 H -0.210 1.210 5 H -0.205 1.205 6 H -0.213 1.213 7 C -0.756 4.756 8 H 0.085 0.915 9 S 0.112 5.888 10 C -0.282 4.282 11 C 0.323 3.677 12 O -0.385 6.385 13 N -0.359 5.359 14 C 0.016 3.984 15 H 0.153 0.847 16 C -0.195 4.195 17 H 0.140 0.860 18 C -0.062 4.062 19 N -0.233 5.233 20 C -0.015 4.015 21 C 0.031 3.969 22 N -0.278 5.278 23 C 0.087 3.913 24 O -0.239 6.239 25 N -0.154 5.154 26 N -0.179 5.179 27 H 0.294 0.706 28 C -0.060 4.060 29 C -0.193 4.193 30 H 0.137 0.863 31 H 0.091 0.909 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.236 0.764 35 H 0.112 0.888 36 H 0.076 0.924 37 H 0.125 0.875 38 H 0.102 0.898 39 H 0.266 0.734 40 H 0.103 0.897 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.991 -29.114 -0.035 29.724 hybrid contribution 1.624 -1.545 0.465 2.289 sum 7.615 -30.659 0.430 31.593 Atomic orbital electron populations 1.70773 1.06705 1.31001 1.43308 1.26066 0.96334 1.02167 0.92992 0.83283 0.74424 0.73919 0.77030 1.21046 1.20490 1.21292 1.23728 0.96061 0.92123 1.63694 0.91528 1.84844 1.07892 0.98809 1.97236 1.23314 1.05305 0.94139 1.05426 1.20333 0.86508 0.86124 0.74738 1.90707 1.15313 1.85430 1.47099 1.45319 1.09930 1.03860 1.76792 1.21647 0.97934 0.78908 0.99917 0.84748 1.23827 1.02399 0.96308 0.96941 0.85967 1.22623 1.00406 0.91102 0.92060 1.65787 1.42780 1.10025 1.04684 1.20840 0.97308 0.95349 0.87966 1.23875 0.89915 0.86661 0.96483 1.70338 1.26092 1.30896 1.00444 1.21153 0.94012 0.89221 0.86904 1.84948 1.37369 1.76085 1.25451 1.78239 1.19805 1.22701 0.94626 1.47716 1.36340 1.22940 1.10917 0.70564 1.22618 0.98974 0.89253 0.95129 1.23951 1.03963 0.98312 0.93091 0.86267 0.90949 0.88770 0.88758 0.76399 0.88763 0.92415 0.87482 0.89839 0.73358 0.89743 0.91665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -27.44 13.67 55.49 0.76 -26.68 16 2 C 0.03 1.01 5.49 -17.43 -0.10 0.92 16 3 Si 1.09 24.89 29.92 -169.99 -5.09 19.81 16 4 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.29 -6.18 7.11 56.52 0.40 -5.77 16 7 C -0.61 -17.42 9.50 30.94 0.29 -17.13 16 8 H 0.07 1.83 7.80 -52.49 -0.41 1.42 16 9 S -0.11 -3.05 19.60 -107.50 -2.11 -5.15 16 10 C -0.13 -2.58 6.16 36.01 0.22 -2.36 16 11 C 0.54 9.71 7.85 -10.98 -0.09 9.62 16 12 O -0.51 -11.31 15.43 5.56 0.09 -11.23 16 13 N -0.71 -9.07 5.56 -53.80 -0.30 -9.37 16 14 C 0.12 1.41 5.98 -67.93 -0.41 1.00 16 15 H 0.13 1.79 7.40 -51.93 -0.38 1.41 16 16 C -0.17 -1.42 7.04 -89.30 -0.63 -2.05 16 17 H 0.12 0.87 8.14 -51.93 -0.42 0.45 16 18 C 0.07 0.42 6.29 -2.18 -0.01 0.41 16 19 N -0.51 -3.53 5.48 -231.38 -1.27 -4.80 16 20 C 0.12 0.60 5.69 -4.97 -0.03 0.57 16 21 C 0.31 2.35 6.75 -155.71 -1.05 1.30 16 22 N -0.54 -5.64 10.63 -12.10 -0.13 -5.77 16 23 C 0.41 4.26 9.46 -91.25 -0.86 3.39 16 24 O -0.44 -3.92 13.66 -19.32 -0.26 -4.18 16 25 N -0.31 -3.06 12.81 29.18 0.37 -2.68 16 26 N -0.46 -3.04 7.44 32.62 0.24 -2.80 16 27 H 0.45 1.37 8.96 -182.34 -1.63 -0.27 16 28 C 0.07 0.64 5.00 -2.16 -0.01 0.63 16 29 C -0.17 -1.66 7.04 -89.29 -0.63 -2.29 16 30 H 0.12 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.28 8.81 7.12 -40.82 -0.29 8.52 16 32 H 0.09 1.73 8.14 -51.92 -0.42 1.31 16 33 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 34 H 0.40 3.94 8.83 -40.82 -0.36 3.58 16 35 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.06 0.37 7.82 -51.93 -0.41 -0.04 16 37 H 0.11 0.22 8.14 -51.93 -0.42 -0.21 16 38 H 0.08 0.44 7.88 -51.93 -0.41 0.03 16 39 H 0.41 1.36 9.06 45.56 0.41 1.77 16 40 H 0.08 0.92 7.86 -51.93 -0.41 0.51 16 41 H 0.07 0.70 8.00 -51.93 -0.42 0.28 16 LS Contribution 367.36 15.07 5.54 5.54 Total: -1.00 -38.97 367.36 -11.09 -50.06 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -5.64 Total: 3.25 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: -3.30 Total: -5.99 kcal Atomic # 7 Polarization: -51.79 SS G_CDS: -0.32 Total: -52.11 kcal Atomic # 8 Polarization: -15.23 SS G_CDS: -0.18 Total: -15.41 kcal Atomic # 14 Polarization: 24.89 SS G_CDS: -5.09 Total: 19.81 kcal Atomic # 16 Polarization: -3.05 SS G_CDS: -2.11 Total: -5.15 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -38.97 -11.09 -50.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113897110.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.845 kcal (2) G-P(sol) polarization free energy of solvation -38.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds