Wall clock time and date at job start Tue Mar 31 2020 22:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86798 * 120.00048 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99685 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99866 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99859 * 3 2 1 7 7 C 1.38797 * 120.00292 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00246 * 180.02562 * 7 2 1 9 9 S 1.76204 * 119.99960 * 359.97438 * 7 2 1 10 10 C 1.81000 * 100.00077 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.46640 * 180.02562 * 10 9 7 12 12 O 1.21279 * 120.00233 * 359.97438 * 11 10 9 13 13 N 1.34780 * 119.99340 * 180.02562 * 11 10 9 14 14 C 1.46506 * 119.99719 * 179.97438 * 13 11 10 15 15 H 1.08997 * 115.51582 * 350.58276 * 14 13 11 16 16 C 1.53000 * 117.44219 * 205.16243 * 14 13 11 17 17 H 1.08999 * 119.52856 * 5.64679 * 16 14 13 18 18 C 1.54383 * 118.12429 * 160.68913 * 16 14 13 19 19 N 1.48555 * 104.59300 * 87.22826 * 18 16 14 20 20 C 1.46905 * 110.99719 * 200.95430 * 19 18 16 21 21 C 1.50700 * 109.47045 * 169.99859 * 20 19 18 22 22 N 1.30888 * 125.91527 * 274.69380 * 21 20 19 23 23 C 1.33547 * 109.78210 * 179.82779 * 22 21 20 24 24 O 1.35867 * 125.58702 * 180.17928 * 23 22 21 25 25 N 1.31067 * 108.82228 * 0.44362 * 23 22 21 26 26 N 1.34356 * 125.90805 * 95.00286 * 21 20 19 27 27 H 0.96993 * 126.77616 * 359.97438 * 26 21 20 28 28 C 1.48559 * 104.22353 * 320.51438 * 19 18 16 29 29 C 1.53001 * 117.44280 * 136.00170 * 14 13 11 30 30 H 1.09005 * 119.52482 * 355.91348 * 29 14 13 31 31 H 0.96998 * 119.99330 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46901 * 299.99874 * 10 9 7 33 33 H 1.08995 * 109.46756 * 60.00354 * 10 9 7 34 34 H 0.96995 * 120.00137 * 359.97438 * 13 11 10 35 35 H 1.09002 * 110.40840 * 206.00587 * 18 16 14 36 36 H 1.08998 * 110.40969 * 328.33003 * 18 16 14 37 37 H 1.08994 * 109.47329 * 289.99972 * 20 19 18 38 38 H 1.09003 * 109.46777 * 50.00876 * 20 19 18 39 39 H 0.96696 * 113.99919 * 270.28245 * 24 23 22 40 40 H 1.09004 * 110.40916 * 158.26675 * 28 19 18 41 41 H 1.09004 * 110.41110 * 280.70097 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0465 1.4001 5 1 1.4478 2.6527 -0.7001 6 1 3.5479 1.4402 -0.7000 7 6 2.0104 -1.2020 -0.0005 8 1 3.0904 -1.2020 -0.0001 9 16 1.1294 -2.7280 -0.0005 10 6 2.5160 -3.8914 -0.0005 11 6 1.9874 -5.3027 -0.0012 12 8 0.7912 -5.5023 -0.0011 13 7 2.8443 -6.3431 -0.0008 14 6 2.3305 -7.7151 -0.0008 15 1 1.2571 -7.8145 0.1598 16 6 3.2340 -8.8063 0.5770 17 1 4.1764 -8.5292 1.0494 18 6 2.5826 -10.1382 1.0072 19 7 2.5692 -10.9644 -0.2274 20 6 1.5671 -12.0345 -0.1339 21 6 1.4080 -12.6926 -1.4802 22 7 0.6261 -12.2839 -2.4470 23 6 0.7387 -13.1026 -3.4961 24 8 0.0730 -12.9750 -4.6736 25 7 1.5925 -14.0524 -3.2015 26 7 2.0399 -13.8039 -1.8936 27 1 2.6791 -14.3304 -1.3887 28 6 2.2229 -10.0033 -1.3060 29 6 2.9984 -8.7181 -0.9437 30 1 3.7772 -8.3774 -1.6261 31 1 -0.4849 -0.8401 0.0004 32 1 3.1246 -3.7313 -0.8905 33 1 3.1245 -3.7313 0.8895 34 1 3.8010 -6.1834 -0.0004 35 1 3.1795 -10.6208 1.7811 36 1 1.5667 -9.9670 1.3632 37 1 1.8934 -12.7750 0.5963 38 1 0.6123 -11.6117 0.1789 39 1 -0.7789 -13.4320 -4.6953 40 1 2.5489 -10.3844 -2.2738 41 1 1.1499 -9.8113 -1.3140 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001113897110.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:10 Heat of formation + Delta-G solvation = 25.117371 kcal Electronic energy + Delta-G solvation = -25480.901607 eV Core-core repulsion = 21524.293520 eV Total energy + Delta-G solvation = -3956.608087 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.38349 -41.44764 -40.17954 -38.56191 -36.60896 -34.74996 -34.27328 -33.43446 -32.13782 -30.72998 -29.48230 -28.10759 -27.07228 -24.34427 -23.53234 -22.18076 -22.01618 -21.74700 -21.29754 -20.40557 -19.58294 -18.69520 -18.18572 -18.06086 -17.38587 -16.74994 -16.53503 -16.38636 -16.19438 -15.76489 -15.65932 -15.08480 -15.01082 -14.60555 -14.48379 -14.06997 -14.04830 -13.96501 -13.63650 -13.52264 -13.14462 -12.90153 -12.74376 -12.62040 -12.54961 -11.94160 -11.93959 -11.57605 -11.34847 -11.17689 -11.12023 -11.10348 -11.10102 -10.72931 -10.32805 -9.87309 -9.64911 -8.92465 -8.87255 -6.27810 0.28593 1.14702 1.27485 1.39298 1.51986 1.55169 1.61916 1.79943 1.98364 2.26922 2.34172 2.63112 2.92045 3.02500 3.12171 3.37145 3.50585 3.58563 3.72595 3.75777 3.77336 4.09293 4.16295 4.22995 4.35706 4.36387 4.43023 4.46640 4.59235 4.75131 4.86760 4.90442 4.91690 5.02742 5.10472 5.39529 5.49957 5.64883 5.73732 6.01230 6.15046 6.35482 6.46647 6.82948 7.06076 7.09574 8.51037 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.023692 B = 0.001781 C = 0.001705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.563898 B =15719.687221 C =16416.516736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.020 4.020 3 Si 1.139 2.861 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.262 1.262 7 C -0.613 4.613 8 H 0.076 0.924 9 S -0.196 6.196 10 C -0.109 4.109 11 C 0.539 3.461 12 O -0.562 6.562 13 N -0.681 5.681 14 C 0.092 3.908 15 H 0.109 0.891 16 C -0.141 4.141 17 H 0.145 0.855 18 C 0.064 3.936 19 N -0.501 5.501 20 C 0.116 3.884 21 C 0.314 3.686 22 N -0.574 5.574 23 C 0.393 3.607 24 O -0.453 6.453 25 N -0.331 5.331 26 N -0.441 5.441 27 H 0.463 0.537 28 C 0.073 3.927 29 C -0.173 4.173 30 H 0.124 0.876 31 H 0.261 0.739 32 H 0.113 0.887 33 H 0.116 0.884 34 H 0.420 0.580 35 H 0.126 0.874 36 H 0.058 0.942 37 H 0.150 0.850 38 H 0.084 0.916 39 H 0.428 0.572 40 H 0.068 0.932 41 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.583 -31.639 2.315 33.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.224 4.224 3 Si 0.957 3.043 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.187 1.187 7 C -0.760 4.760 8 H 0.095 0.905 9 S 0.031 5.969 10 C -0.260 4.260 11 C 0.325 3.675 12 O -0.440 6.440 13 N -0.332 5.332 14 C -0.015 4.015 15 H 0.126 0.874 16 C -0.161 4.161 17 H 0.163 0.837 18 C -0.063 4.063 19 N -0.227 5.227 20 C -0.014 4.014 21 C 0.035 3.965 22 N -0.313 5.313 23 C 0.074 3.926 24 O -0.256 6.256 25 N -0.175 5.175 26 N -0.165 5.165 27 H 0.314 0.686 28 C -0.055 4.055 29 C -0.193 4.193 30 H 0.141 0.859 31 H 0.072 0.928 32 H 0.131 0.869 33 H 0.135 0.865 34 H 0.258 0.742 35 H 0.144 0.856 36 H 0.077 0.923 37 H 0.168 0.832 38 H 0.102 0.898 39 H 0.289 0.711 40 H 0.086 0.914 41 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 9.229 -30.583 1.391 31.976 hybrid contribution 0.672 -1.313 0.022 1.475 sum 9.900 -31.896 1.413 33.427 Atomic orbital electron populations 1.70892 1.08024 1.30034 1.45932 1.27847 0.96337 1.06441 0.91729 0.82678 0.73990 0.69414 0.78199 1.19195 1.20554 1.18675 1.24057 0.96547 0.92708 1.62718 0.90548 1.85095 1.13110 1.01192 1.97490 1.23210 1.02257 0.93207 1.07329 1.20029 0.86210 0.86492 0.74773 1.90698 1.17399 1.85936 1.49930 1.44960 1.10186 1.03490 1.74606 1.21685 0.97526 0.78601 1.03670 0.87352 1.23988 1.01715 0.94919 0.95498 0.83722 1.22787 1.01017 0.90209 0.92259 1.65812 1.43144 1.09598 1.04106 1.21110 0.97257 0.95599 0.87441 1.24246 0.89015 0.86528 0.96670 1.70328 1.27752 1.31922 1.01306 1.21362 0.94496 0.89534 0.87256 1.84881 1.38708 1.76684 1.25322 1.78150 1.20066 1.23102 0.96161 1.47625 1.36120 1.22776 1.09978 0.68608 1.22446 0.97636 0.89861 0.95515 1.23914 1.03522 0.97358 0.94536 0.85851 0.92838 0.86931 0.86535 0.74229 0.85589 0.92349 0.83229 0.89774 0.71090 0.91390 0.93677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -58.12 13.67 21.65 0.30 -57.83 16 2 C -0.02 -1.19 5.49 84.86 0.47 -0.72 16 3 Si 1.14 49.21 29.92 68.60 2.05 51.26 16 4 H -0.27 -10.71 7.11 99.48 0.71 -10.01 16 5 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 6 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 7 C -0.61 -35.16 9.50 67.95 0.65 -34.51 16 8 H 0.08 4.09 7.80 -2.91 -0.02 4.07 16 9 S -0.20 -10.72 19.60 -56.49 -1.11 -11.83 16 10 C -0.11 -4.20 6.16 71.24 0.44 -3.76 16 11 C 0.54 19.38 7.85 87.66 0.69 20.07 16 12 O -0.56 -25.69 15.43 -3.03 -0.05 -25.74 16 13 N -0.68 -16.43 5.56 -442.52 -2.46 -18.90 16 14 C 0.09 2.00 5.98 44.99 0.27 2.27 16 15 H 0.11 2.99 7.40 -2.39 -0.02 2.97 16 16 C -0.14 -1.85 7.04 -9.94 -0.07 -1.92 16 17 H 0.15 1.35 8.14 -2.39 -0.02 1.33 16 18 C 0.06 0.59 6.29 86.45 0.54 1.14 16 19 N -0.50 -5.61 5.48 -885.96 -4.86 -10.46 16 20 C 0.12 0.89 5.69 85.56 0.49 1.38 16 21 C 0.31 4.34 6.75 138.23 0.93 5.27 16 22 N -0.57 -12.01 10.63 -304.30 -3.24 -15.25 16 23 C 0.39 8.31 9.46 180.57 1.71 10.02 16 24 O -0.45 -8.33 13.66 -92.05 -1.26 -9.59 16 25 N -0.33 -6.35 12.81 -174.94 -2.24 -8.59 16 26 N -0.44 -5.17 7.44 -50.72 -0.38 -5.54 16 27 H 0.46 1.71 8.96 -213.11 -1.91 -0.20 16 28 C 0.07 1.33 5.00 86.46 0.43 1.76 16 29 C -0.17 -3.05 7.04 -9.93 -0.07 -3.12 16 30 H 0.12 2.10 8.14 -2.38 -0.02 2.08 16 31 H 0.26 17.26 7.12 -92.71 -0.66 16.59 16 32 H 0.11 3.94 8.14 -2.40 -0.02 3.92 16 33 H 0.12 3.99 8.14 -2.40 -0.02 3.97 16 34 H 0.42 7.03 8.83 -92.71 -0.82 6.21 16 35 H 0.13 0.50 8.14 -2.39 -0.02 0.48 16 36 H 0.06 0.58 7.82 -2.39 -0.02 0.56 16 37 H 0.15 -0.09 8.14 -2.39 -0.02 -0.11 16 38 H 0.08 0.71 7.88 -2.39 -0.02 0.69 16 39 H 0.43 3.07 9.06 -74.06 -0.67 2.39 16 40 H 0.07 1.47 7.86 -2.38 -0.02 1.45 16 41 H 0.04 0.99 8.00 -2.38 -0.02 0.98 16 Total: -1.00 -89.09 367.36 -8.93 -98.02 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: -2.17 Total: 16.57 kcal Atomic # 6 Polarization: -8.61 SS G_CDS: 6.47 Total: -2.13 kcal Atomic # 7 Polarization: -103.69 SS G_CDS: -12.88 Total: -116.57 kcal Atomic # 8 Polarization: -34.02 SS G_CDS: -1.30 Total: -35.33 kcal Atomic # 14 Polarization: 49.21 SS G_CDS: 2.05 Total: 51.26 kcal Atomic # 16 Polarization: -10.72 SS G_CDS: -1.11 Total: -11.83 kcal Total: -89.09 -8.93 -98.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113897110.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.139 kcal (2) G-P(sol) polarization free energy of solvation -89.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds