Wall clock time and date at job start Tue Mar 31 2020 22:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86798 * 119.99825 * 2 1 4 4 H 1.48501 * 109.47283 * 269.99768 * 3 2 1 5 5 H 1.48494 * 109.47531 * 30.00323 * 3 2 1 6 6 H 1.48510 * 109.46953 * 150.00230 * 3 2 1 7 7 C 1.38799 * 119.99814 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00294 * 0.02562 * 7 2 1 9 9 S 1.76201 * 119.99874 * 180.02562 * 7 2 1 10 10 C 1.81000 * 100.00008 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.46928 * 179.97438 * 10 9 7 12 12 O 1.21277 * 120.00147 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99762 * 179.97438 * 11 10 9 14 14 C 1.46502 * 120.00056 * 180.02562 * 13 11 10 15 15 H 1.09004 * 112.84738 * 23.80513 * 14 13 11 16 16 C 1.53776 * 113.61533 * 154.99992 * 14 13 11 17 17 C 1.53787 * 87.07971 * 89.11717 * 16 14 13 18 18 H 1.08992 * 113.61688 * 270.80015 * 17 16 14 19 19 C 1.53000 * 113.61228 * 139.97805 * 17 16 14 20 20 N 1.46499 * 109.46840 * 174.99997 * 19 17 16 21 21 C 1.38995 * 119.99882 * 179.97438 * 20 19 17 22 22 C 1.39067 * 119.69066 * 359.73069 * 21 20 19 23 23 C 1.38381 * 119.15668 * 179.79532 * 22 21 20 24 24 C 1.38752 * 118.53531 * 0.46415 * 23 22 21 25 25 C 1.38368 * 119.30385 * 359.75955 * 24 23 22 26 26 F 1.35106 * 119.60410 * 179.97438 * 25 24 23 27 27 N 1.32137 * 120.79730 * 0.02562 * 25 24 23 28 28 C 1.53781 * 113.61361 * 252.50370 * 14 13 11 29 29 H 0.96998 * 120.00304 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.47158 * 60.00306 * 10 9 7 31 31 H 1.08996 * 109.46792 * 299.99431 * 10 9 7 32 32 H 0.96996 * 119.99838 * 0.02562 * 13 11 10 33 33 H 1.08999 * 113.61671 * 334.57363 * 16 14 13 34 34 H 1.08993 * 113.61590 * 203.66180 * 16 14 13 35 35 H 1.09002 * 109.47398 * 295.00323 * 19 17 16 36 36 H 1.09001 * 109.47194 * 55.00504 * 19 17 16 37 37 H 0.97000 * 120.00420 * 0.02562 * 20 19 17 38 38 H 1.08005 * 120.42125 * 359.97438 * 22 21 20 39 39 H 1.08001 * 120.72680 * 180.22543 * 23 22 21 40 40 H 1.07998 * 120.34674 * 179.77180 * 24 23 22 41 41 H 1.08998 * 113.61029 * 156.33864 * 28 14 13 42 42 H 1.08997 * 113.61702 * 25.43022 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6527 0.7001 6 1 3.5479 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 16 3.7723 -1.2021 0.0012 10 6 4.0866 -2.9846 0.0009 11 6 5.5731 -3.2325 0.0008 12 8 6.3440 -2.2963 0.0014 13 7 6.0457 -4.4947 0.0011 14 6 7.4907 -4.7358 0.0016 15 1 8.0593 -3.8989 0.4071 16 6 7.8880 -6.0967 0.5974 17 6 7.7386 -6.6726 -0.8207 18 1 6.7316 -7.0241 -1.0454 19 6 8.8190 -7.6929 -1.1849 20 7 8.5240 -8.2683 -2.4994 21 6 9.3717 -9.2251 -3.0452 22 6 10.5010 -9.6274 -2.3404 23 6 11.3350 -10.5838 -2.8923 24 6 11.0161 -11.1011 -4.1397 25 6 9.8792 -10.6526 -4.7883 26 9 9.5632 -11.1518 -6.0034 27 7 9.0993 -9.7411 -4.2343 28 6 8.0290 -5.2552 -1.3420 29 1 -0.4850 0.8400 0.0004 30 1 3.6440 -3.4314 -0.8893 31 1 3.6434 -3.4317 0.8907 32 1 5.4291 -5.2434 0.0011 33 1 7.1614 -6.4913 1.3076 34 1 8.9099 -6.1263 0.9751 35 1 9.7902 -7.1989 -1.2141 36 1 8.8370 -8.4856 -0.4370 37 1 7.7376 -7.9811 -2.9892 38 1 10.7228 -9.2008 -1.3733 39 1 12.2168 -10.9174 -2.3654 40 1 11.6486 -11.8462 -4.5993 41 1 9.0895 -5.0549 -1.4943 42 1 7.4163 -4.9705 -2.1973 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001114756705.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:50 Heat of formation + Delta-G solvation = -18.538990 kcal Electronic energy + Delta-G solvation = -24860.194666 eV Core-core repulsion = 20881.773535 eV Total energy + Delta-G solvation = -3978.421131 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.34791 -40.74171 -40.22380 -38.43321 -36.02474 -33.36910 -32.92960 -32.46209 -30.41325 -29.29583 -27.47189 -26.08955 -25.64097 -24.21127 -23.47487 -22.33473 -21.03419 -19.60941 -18.49506 -18.10747 -17.86738 -16.67471 -16.46922 -16.45917 -16.22797 -15.95874 -15.67375 -15.31609 -15.14304 -14.98967 -14.42220 -14.28345 -13.89972 -13.71281 -13.55177 -13.41576 -13.21966 -12.90555 -12.81626 -12.62755 -12.49497 -11.98845 -11.45529 -11.28876 -11.03289 -10.96801 -10.86706 -10.67256 -10.53609 -10.14408 -10.05985 -9.88407 -9.60346 -9.07405 -9.01269 -8.53770 -8.25795 -6.95151 -6.31282 -4.03522 0.63876 0.86271 2.39935 2.69984 2.86999 3.24091 3.27405 3.31633 3.48216 3.49515 3.59682 4.06069 4.11117 4.16882 4.28996 4.30875 4.44714 4.52254 4.66559 4.69650 4.72716 4.80702 5.02884 5.07328 5.07821 5.18804 5.26716 5.31630 5.35048 5.36339 5.60771 5.67116 5.70040 5.71385 5.72957 5.87484 5.96766 6.04065 6.44158 6.52850 6.96730 7.49378 7.52332 7.91650 8.39020 8.41423 9.14760 10.77910 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.024298 B = 0.001618 C = 0.001559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.060476 B =17303.417423 C =17961.299270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.523 4.523 8 H 0.088 0.912 9 S -0.141 6.141 10 C -0.125 4.125 11 C 0.534 3.466 12 O -0.517 6.517 13 N -0.720 5.720 14 C 0.124 3.876 15 H 0.105 0.895 16 C -0.134 4.134 17 C -0.126 4.126 18 H 0.099 0.901 19 C 0.137 3.863 20 N -0.717 5.717 21 C 0.440 3.560 22 C -0.252 4.252 23 C -0.006 4.006 24 C -0.259 4.259 25 C 0.357 3.643 26 F -0.113 7.113 27 N -0.579 5.579 28 C -0.148 4.148 29 H 0.271 0.729 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.400 0.600 33 H 0.079 0.921 34 H 0.097 0.903 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.409 0.591 38 H 0.139 0.861 39 H 0.144 0.856 40 H 0.143 0.857 41 H 0.091 0.909 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.804 -23.809 -2.028 33.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.113 4.113 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.670 4.670 8 H 0.106 0.894 9 S 0.085 5.915 10 C -0.275 4.275 11 C 0.320 3.680 12 O -0.391 6.391 13 N -0.374 5.374 14 C 0.018 3.982 15 H 0.123 0.877 16 C -0.173 4.173 17 C -0.144 4.144 18 H 0.117 0.883 19 C 0.013 3.987 20 N -0.348 5.348 21 C 0.203 3.797 22 C -0.277 4.277 23 C -0.032 4.032 24 C -0.284 4.284 25 C 0.203 3.797 26 F -0.092 7.092 27 N -0.303 5.303 28 C -0.187 4.187 29 H 0.081 0.919 30 H 0.115 0.885 31 H 0.116 0.884 32 H 0.234 0.766 33 H 0.097 0.903 34 H 0.116 0.884 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.245 0.755 38 H 0.157 0.843 39 H 0.162 0.838 40 H 0.161 0.839 41 H 0.110 0.890 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 24.219 -21.781 -2.300 32.654 hybrid contribution -0.900 -1.019 -0.191 1.373 sum 23.319 -22.800 -2.491 32.708 Atomic orbital electron populations 1.69935 1.05915 1.27798 1.47960 1.24713 0.94454 0.98971 0.93149 0.86734 0.81878 0.83279 0.79950 1.19197 1.19906 1.15936 1.22313 0.88235 0.97553 1.58916 0.89379 1.84797 1.09340 0.99900 1.97432 1.23284 0.93865 1.04544 1.05852 1.20314 0.90604 0.82251 0.74846 1.90700 1.58744 1.42161 1.47473 1.45668 1.06363 1.08084 1.77246 1.21704 0.82409 0.97806 0.96311 0.87732 1.23302 1.03071 0.95443 0.95506 1.22865 0.99314 0.94499 0.97759 0.88317 1.21524 0.98592 0.95665 0.82909 1.44652 1.28024 1.41794 1.20345 1.17840 0.88032 0.87129 0.86708 1.21439 0.97643 1.04964 1.03624 1.21196 0.97354 0.91763 0.92870 1.21484 1.00084 1.08120 0.98672 1.17669 0.90332 0.90396 0.81327 1.91634 1.92864 1.84443 1.40307 1.66234 1.35053 1.15678 1.13328 1.23547 1.02129 0.94367 0.98620 0.91914 0.88476 0.88393 0.76622 0.90273 0.88418 0.91238 0.91391 0.75525 0.84279 0.83849 0.83911 0.89014 0.90662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.38 13.97 55.49 0.78 -25.60 16 2 C 0.10 2.79 5.50 -17.43 -0.10 2.69 16 3 Si 0.86 21.62 27.74 -169.99 -4.72 16.91 16 4 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.24 -5.92 6.74 56.52 0.38 -5.54 16 7 C -0.52 -14.91 10.04 30.94 0.31 -14.60 16 8 H 0.09 2.62 8.03 -52.49 -0.42 2.20 16 9 S -0.14 -3.52 18.55 -107.50 -1.99 -5.51 16 10 C -0.12 -2.32 6.16 36.01 0.22 -2.10 16 11 C 0.53 8.92 7.85 -10.98 -0.09 8.84 16 12 O -0.52 -10.69 15.46 5.56 0.09 -10.60 16 13 N -0.72 -8.09 5.26 -53.02 -0.28 -8.37 16 14 C 0.12 1.15 4.32 -67.12 -0.29 0.86 16 15 H 0.10 1.19 7.46 -51.93 -0.39 0.80 16 16 C -0.13 -0.74 7.39 -25.92 -0.19 -0.93 16 17 C -0.13 -0.66 3.63 -89.80 -0.33 -0.99 16 18 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 19 C 0.14 0.64 4.73 -4.04 -0.02 0.62 16 20 N -0.72 -4.90 5.73 -60.43 -0.35 -5.25 16 21 C 0.44 3.74 7.65 -155.01 -1.19 2.55 16 22 C -0.25 -1.57 9.33 -39.22 -0.37 -1.93 16 23 C -0.01 -0.03 10.16 -39.34 -0.40 -0.43 16 24 C -0.26 -1.75 10.08 -39.34 -0.40 -2.14 16 25 C 0.36 3.45 8.40 -17.37 -0.15 3.31 16 26 F -0.11 -1.16 17.29 2.25 0.04 -1.12 16 27 N -0.58 -6.21 10.40 -12.78 -0.13 -6.34 16 28 C -0.15 -1.12 7.43 -25.92 -0.19 -1.32 16 29 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 30 H 0.10 1.68 8.14 -51.92 -0.42 1.26 16 31 H 0.10 1.69 8.14 -51.92 -0.42 1.26 16 32 H 0.40 3.40 8.70 -40.82 -0.36 3.04 16 33 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.10 0.40 8.10 -51.93 -0.42 -0.02 16 35 H 0.07 0.29 7.62 -51.93 -0.40 -0.11 16 36 H 0.07 0.26 7.94 -51.93 -0.41 -0.15 16 37 H 0.41 2.93 8.60 -40.82 -0.35 2.58 16 38 H 0.14 0.56 6.70 -52.48 -0.35 0.21 16 39 H 0.14 0.31 8.06 -52.49 -0.42 -0.11 16 40 H 0.14 0.65 8.06 -52.49 -0.42 0.22 16 41 H 0.09 0.63 7.90 -51.93 -0.41 0.22 16 42 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 374.18 15.07 5.64 5.64 Total: -1.00 -35.20 374.18 -9.71 -44.92 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -5.62 Total: 0.93 kcal Atomic # 6 Polarization: -2.43 SS G_CDS: -3.16 Total: -5.59 kcal Atomic # 7 Polarization: -45.59 SS G_CDS: 0.02 Total: -45.57 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: 0.09 Total: -10.60 kcal Atomic # 9 Polarization: -1.16 SS G_CDS: 0.04 Total: -1.12 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.72 Total: 16.91 kcal Atomic # 16 Polarization: -3.52 SS G_CDS: -1.99 Total: -5.51 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -35.20 -9.71 -44.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114756705.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.376 kcal (2) G-P(sol) polarization free energy of solvation -35.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds