Wall clock time and date at job start Tue Mar 31 2020 22:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31294 * 1 3 3 Si 1.86803 * 120.00005 * 2 1 4 4 H 1.48506 * 109.47253 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 300.00098 * 3 2 1 6 6 H 1.48498 * 109.47018 * 60.00144 * 3 2 1 7 7 C 1.38992 * 120.00157 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99846 * 179.97438 * 7 2 1 9 9 N 1.37320 * 119.99664 * 0.27652 * 7 2 1 10 10 C 1.36499 * 126.06669 * 179.72504 * 9 7 2 11 11 C 1.35688 * 107.50635 * 180.02562 * 10 9 7 12 12 N 1.40556 * 126.08206 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99889 * 179.97438 * 12 11 10 14 14 O 1.21625 * 119.99633 * 0.02562 * 13 12 11 15 15 C 1.47505 * 119.99994 * 180.02562 * 13 12 11 16 16 C 1.36604 * 125.76918 * 180.02562 * 15 13 12 17 17 N 1.34827 * 106.83683 * 179.97438 * 16 15 13 18 18 C 1.46495 * 126.59891 * 180.02562 * 17 16 15 19 19 C 1.50708 * 109.47175 * 124.99941 * 18 17 16 20 20 C 1.38223 * 119.61757 * 124.73255 * 19 18 17 21 21 C 1.38622 * 119.16249 * 179.75349 * 20 19 18 22 22 C 1.38676 * 118.42040 * 0.50998 * 21 20 19 23 23 C 1.38188 * 119.15807 * 359.73151 * 22 21 20 24 24 N 1.31846 * 119.61869 * 305.00330 * 19 18 17 25 25 N 1.40215 * 106.81015 * 359.97438 * 17 16 15 26 26 N 1.28765 * 108.36587 * 359.72679 * 25 17 16 27 27 C 1.40658 * 107.83091 * 359.97438 * 11 10 9 28 28 N 1.30907 * 108.39018 * 359.72224 * 27 11 10 29 29 H 0.96996 * 120.00263 * 359.97438 * 1 2 3 30 30 H 1.08003 * 126.24549 * 359.95965 * 10 9 7 31 31 H 0.96997 * 120.00269 * 359.97438 * 12 11 10 32 32 H 1.07995 * 126.58286 * 359.97438 * 16 15 13 33 33 H 1.08994 * 109.47523 * 245.00069 * 18 17 16 34 34 H 1.09001 * 109.46921 * 5.00350 * 18 17 16 35 35 H 1.08010 * 120.41874 * 359.97438 * 20 19 18 36 36 H 1.08002 * 120.79645 * 180.25957 * 21 20 19 37 37 H 1.08000 * 120.42019 * 179.70641 * 22 21 20 38 38 H 1.08004 * 119.60970 * 180.02562 * 23 22 21 39 39 H 1.08004 * 125.80710 * 180.02562 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2470 1.6178 0.0000 4 1 3.7070 1.3464 0.0006 5 1 1.8882 2.3964 -1.2124 6 1 1.8882 2.3964 1.2125 7 6 2.0079 -1.2037 -0.0005 8 1 3.0880 -1.2036 -0.0010 9 7 1.3213 -2.3929 -0.0068 10 6 1.8750 -3.6405 -0.0134 11 6 0.8578 -4.5385 -0.0187 12 7 0.9890 -5.9379 -0.0268 13 6 -0.1102 -6.7178 -0.0309 14 8 -1.2156 -6.2105 -0.0281 15 6 0.0275 -8.1863 -0.0388 16 6 -1.0015 -9.0848 -0.0440 17 7 -0.4470 -10.3137 -0.0511 18 6 -1.1597 -11.5935 -0.0590 19 6 -0.6915 -12.4220 -1.2276 20 6 -0.2014 -13.6958 -1.0092 21 6 0.2219 -14.4516 -2.0914 22 6 0.1460 -13.8913 -3.3577 23 6 -0.3508 -12.6095 -3.4981 24 7 -0.7492 -11.9214 -2.4460 25 7 0.9433 -10.1312 -0.0505 26 7 1.1865 -8.8668 -0.0493 27 6 -0.3513 -3.8197 -0.0147 28 7 -0.0715 -2.5410 -0.0013 29 1 -0.4850 0.8400 0.0004 30 1 2.9302 -3.8708 -0.0152 31 1 1.8706 -6.3424 -0.0293 32 1 -2.0567 -8.8549 -0.0428 33 1 -0.9576 -12.1278 0.8692 34 1 -2.2309 -11.4123 -0.1481 35 1 -0.1521 -14.0986 -0.0082 36 1 0.6055 -15.4514 -1.9515 37 1 0.4714 -14.4496 -4.2231 38 1 -0.4136 -12.1662 -4.4810 39 1 -1.3420 -4.2497 -0.0169 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116142518.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:37 Heat of formation + Delta-G solvation = 193.661632 kcal Electronic energy + Delta-G solvation = -26703.284000 eV Core-core repulsion = 22650.833340 eV Total energy + Delta-G solvation = -4052.450660 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.17605 -40.64355 -39.71590 -38.25795 -35.36430 -34.13256 -33.07905 -32.93299 -32.08528 -30.83649 -30.09920 -28.10259 -27.39446 -24.96685 -24.10424 -23.44132 -23.23933 -21.82759 -20.92283 -20.25204 -19.28967 -18.14771 -17.48162 -17.19204 -16.63762 -16.27275 -16.14864 -15.62049 -15.38821 -15.23011 -14.70491 -14.39010 -14.28893 -14.10058 -13.86910 -13.62328 -13.50004 -13.16612 -12.96982 -12.82887 -12.35343 -12.06959 -11.63156 -11.36136 -11.25397 -11.23218 -10.87779 -10.56526 -10.46119 -10.38809 -10.09979 -9.96109 -9.61919 -9.32389 -9.19450 -9.09146 -8.74259 -7.98377 -6.60478 -6.49733 -4.15649 0.44734 0.75750 1.17078 1.89165 1.96379 2.99418 3.09774 3.15616 3.25146 3.44780 3.49860 3.67269 3.87448 3.92570 4.04543 4.25690 4.32430 4.38742 4.52118 4.54934 4.59525 4.67816 4.77970 4.97691 4.98149 5.08613 5.16508 5.18244 5.29123 5.54631 5.63423 5.90210 6.11845 6.26436 6.34694 6.55161 6.98146 7.03395 7.19711 7.30748 7.43848 7.91723 7.96713 8.28627 8.37585 8.69283 8.92409 9.45048 9.74276 10.46478 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.034256 B = 0.001814 C = 0.001795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.189033 B =15427.915054 C =15590.858770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.771 5.771 2 C 0.046 3.954 3 Si 0.934 3.066 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.322 4.322 8 H 0.117 0.883 9 N -0.144 5.144 10 C -0.080 4.080 11 C -0.058 4.058 12 N -0.605 5.605 13 C 0.586 3.414 14 O -0.537 6.537 15 C -0.085 4.085 16 C 0.098 3.902 17 N -0.357 5.357 18 C 0.179 3.821 19 C 0.105 3.895 20 C -0.149 4.149 21 C -0.074 4.074 22 C -0.164 4.164 23 C 0.105 3.895 24 N -0.467 5.467 25 N -0.066 5.066 26 N -0.207 5.207 27 C -0.031 4.031 28 N -0.260 5.260 29 H 0.274 0.726 30 H 0.147 0.853 31 H 0.405 0.595 32 H 0.205 0.795 33 H 0.115 0.885 34 H 0.122 0.878 35 H 0.140 0.860 36 H 0.139 0.861 37 H 0.138 0.862 38 H 0.159 0.841 39 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.363 -28.772 -2.484 28.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.171 4.171 3 Si 0.758 3.242 4 H -0.187 1.187 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.454 4.454 8 H 0.134 0.866 9 N 0.089 4.911 10 C -0.231 4.231 11 C -0.164 4.164 12 N -0.246 5.246 13 C 0.370 3.630 14 O -0.413 6.413 15 C -0.225 4.225 16 C -0.058 4.058 17 N -0.142 5.142 18 C 0.057 3.943 19 C -0.034 4.034 20 C -0.169 4.169 21 C -0.100 4.100 22 C -0.184 4.184 23 C -0.052 4.052 24 N -0.176 5.176 25 N -0.046 5.046 26 N -0.081 5.081 27 C -0.207 4.207 28 N -0.091 5.091 29 H 0.084 0.916 30 H 0.164 0.836 31 H 0.239 0.761 32 H 0.221 0.779 33 H 0.133 0.867 34 H 0.140 0.860 35 H 0.157 0.843 36 H 0.156 0.844 37 H 0.156 0.844 38 H 0.176 0.824 39 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -1.806 -26.923 -2.580 27.107 hybrid contribution 0.616 -1.035 -0.033 1.205 sum -1.189 -27.958 -2.613 28.105 Atomic orbital electron populations 1.70228 1.06101 1.27781 1.35633 1.25640 0.95703 1.00234 0.95550 0.85770 0.79659 0.80332 0.78408 1.18697 1.19965 1.19962 1.19919 0.91689 0.80532 1.53274 0.86570 1.44549 1.04038 1.03289 1.39258 1.21282 0.96932 0.85293 1.19565 1.17265 0.94428 0.80994 1.23704 1.42262 1.08413 1.04393 1.69549 1.16548 0.84717 0.82843 0.78940 1.90698 1.25557 1.73287 1.51807 1.21553 0.88751 0.96099 1.16069 1.23317 1.01350 0.83390 0.97724 1.50162 1.07439 1.06176 1.50446 1.20745 0.96940 0.79998 0.96595 1.20962 0.97435 0.92486 0.92514 1.21911 0.99375 0.94984 1.00670 1.21610 0.95982 1.00071 0.92341 1.22259 1.00457 0.97136 0.98573 1.22797 0.93655 0.91265 0.97483 1.67404 1.14780 1.36629 0.98781 1.81935 0.89634 1.10261 1.22799 1.74616 1.24352 0.98999 1.10162 1.24124 0.98016 0.90708 1.07862 1.78239 0.90160 1.15060 1.25678 0.91579 0.83559 0.76121 0.77875 0.86743 0.85959 0.84265 0.84354 0.84399 0.82362 0.80609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.90 11.81 55.50 0.66 -21.24 16 2 C 0.05 1.20 5.50 -17.50 -0.10 1.10 16 3 Si 0.93 19.33 29.55 -169.99 -5.02 14.31 16 4 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 5 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 6 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 7 C -0.32 -8.72 10.25 -14.81 -0.15 -8.87 16 8 H 0.12 2.83 7.83 -52.49 -0.41 2.41 16 9 N -0.14 -4.05 3.74 -11.41 -0.04 -4.10 16 10 C -0.08 -1.96 11.49 -16.39 -0.19 -2.15 16 11 C -0.06 -1.42 6.90 -83.85 -0.58 -1.99 16 12 N -0.61 -12.17 5.46 -10.94 -0.06 -12.23 16 13 C 0.59 11.37 7.79 -12.48 -0.10 11.28 16 14 O -0.54 -11.72 14.01 5.26 0.07 -11.65 16 15 C -0.09 -1.36 6.99 -83.56 -0.58 -1.94 16 16 C 0.10 1.20 11.27 -16.83 -0.19 1.01 16 17 N -0.36 -3.91 3.64 -62.24 -0.23 -4.14 16 18 C 0.18 1.15 6.92 -5.19 -0.04 1.11 16 19 C 0.10 0.83 6.26 -82.59 -0.52 0.31 16 20 C -0.15 -0.86 9.71 -39.44 -0.38 -1.24 16 21 C -0.07 -0.38 10.18 -39.28 -0.40 -0.78 16 22 C -0.16 -0.93 10.11 -39.44 -0.40 -1.33 16 23 C 0.11 0.83 11.18 -17.55 -0.20 0.63 16 24 N -0.47 -4.70 10.22 -9.47 -0.10 -4.80 16 25 N -0.07 -0.94 13.63 60.35 0.82 -0.12 16 26 N -0.21 -3.31 12.04 32.84 0.40 -2.91 16 27 C -0.03 -0.85 10.85 -17.03 -0.18 -1.03 16 28 N -0.26 -7.74 10.40 30.80 0.32 -7.42 16 29 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 30 H 0.15 3.05 8.06 -52.48 -0.42 2.63 16 31 H 0.40 7.07 8.51 -40.82 -0.35 6.72 16 32 H 0.20 1.88 8.06 -52.49 -0.42 1.45 16 33 H 0.11 0.40 7.87 -51.93 -0.41 0.00 16 34 H 0.12 0.47 8.08 -51.93 -0.42 0.05 16 35 H 0.14 0.42 7.95 -52.48 -0.42 0.01 16 36 H 0.14 0.35 8.06 -52.49 -0.42 -0.08 16 37 H 0.14 0.43 8.06 -52.49 -0.42 0.01 16 38 H 0.16 0.95 8.06 -52.48 -0.42 0.53 16 39 H 0.18 4.65 5.91 -52.48 -0.31 4.34 16 LS Contribution 355.97 15.07 5.36 5.36 Total: -1.00 -37.84 355.97 -5.38 -43.22 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -3.56 Total: 9.60 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: -4.00 Total: -3.90 kcal Atomic # 7 Polarization: -58.72 SS G_CDS: 1.77 Total: -56.95 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: 0.07 Total: -11.65 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.02 Total: 14.31 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -37.84 -5.38 -43.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116142518.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 236.884 kcal (2) G-P(sol) polarization free energy of solvation -37.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 199.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 193.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds