Wall clock time and date at job start Tue Mar 31 2020 22:18:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31294 * 1 3 3 Si 1.86803 * 120.00005 * 2 1 4 4 H 1.48506 * 109.47253 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 300.00098 * 3 2 1 6 6 H 1.48498 * 109.47018 * 60.00144 * 3 2 1 7 7 C 1.38992 * 120.00157 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99846 * 179.97438 * 7 2 1 9 9 N 1.37320 * 119.99664 * 0.27652 * 7 2 1 10 10 C 1.36499 * 126.06669 * 179.72504 * 9 7 2 11 11 C 1.35688 * 107.50635 * 180.02562 * 10 9 7 12 12 N 1.40556 * 126.08206 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99889 * 179.97438 * 12 11 10 14 14 O 1.21625 * 119.99633 * 0.02562 * 13 12 11 15 15 C 1.47505 * 119.99994 * 180.02562 * 13 12 11 16 16 C 1.36604 * 125.76918 * 180.02562 * 15 13 12 17 17 N 1.34827 * 106.83683 * 179.97438 * 16 15 13 18 18 C 1.46495 * 126.59891 * 180.02562 * 17 16 15 19 19 C 1.50708 * 109.47175 * 124.99941 * 18 17 16 20 20 C 1.38223 * 119.61757 * 124.73255 * 19 18 17 21 21 C 1.38622 * 119.16249 * 179.75349 * 20 19 18 22 22 C 1.38676 * 118.42040 * 0.50998 * 21 20 19 23 23 C 1.38188 * 119.15807 * 359.73151 * 22 21 20 24 24 N 1.31846 * 119.61869 * 305.00330 * 19 18 17 25 25 N 1.40215 * 106.81015 * 359.97438 * 17 16 15 26 26 N 1.28765 * 108.36587 * 359.72679 * 25 17 16 27 27 C 1.40658 * 107.83091 * 359.97438 * 11 10 9 28 28 N 1.30907 * 108.39018 * 359.72224 * 27 11 10 29 29 H 0.96996 * 120.00263 * 359.97438 * 1 2 3 30 30 H 1.08003 * 126.24549 * 359.95965 * 10 9 7 31 31 H 0.96997 * 120.00269 * 359.97438 * 12 11 10 32 32 H 1.07995 * 126.58286 * 359.97438 * 16 15 13 33 33 H 1.08994 * 109.47523 * 245.00069 * 18 17 16 34 34 H 1.09001 * 109.46921 * 5.00350 * 18 17 16 35 35 H 1.08010 * 120.41874 * 359.97438 * 20 19 18 36 36 H 1.08002 * 120.79645 * 180.25957 * 21 20 19 37 37 H 1.08000 * 120.42019 * 179.70641 * 22 21 20 38 38 H 1.08004 * 119.60970 * 180.02562 * 23 22 21 39 39 H 1.08004 * 125.80710 * 180.02562 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2470 1.6178 0.0000 4 1 3.7070 1.3464 0.0006 5 1 1.8882 2.3964 -1.2124 6 1 1.8882 2.3964 1.2125 7 6 2.0079 -1.2037 -0.0005 8 1 3.0880 -1.2036 -0.0010 9 7 1.3213 -2.3929 -0.0068 10 6 1.8750 -3.6405 -0.0134 11 6 0.8578 -4.5385 -0.0187 12 7 0.9890 -5.9379 -0.0268 13 6 -0.1102 -6.7178 -0.0309 14 8 -1.2156 -6.2105 -0.0281 15 6 0.0275 -8.1863 -0.0388 16 6 -1.0015 -9.0848 -0.0440 17 7 -0.4470 -10.3137 -0.0511 18 6 -1.1597 -11.5935 -0.0590 19 6 -0.6915 -12.4220 -1.2276 20 6 -0.2014 -13.6958 -1.0092 21 6 0.2219 -14.4516 -2.0914 22 6 0.1460 -13.8913 -3.3577 23 6 -0.3508 -12.6095 -3.4981 24 7 -0.7492 -11.9214 -2.4460 25 7 0.9433 -10.1312 -0.0505 26 7 1.1865 -8.8668 -0.0493 27 6 -0.3513 -3.8197 -0.0147 28 7 -0.0715 -2.5410 -0.0013 29 1 -0.4850 0.8400 0.0004 30 1 2.9302 -3.8708 -0.0152 31 1 1.8706 -6.3424 -0.0293 32 1 -2.0567 -8.8549 -0.0428 33 1 -0.9576 -12.1278 0.8692 34 1 -2.2309 -11.4123 -0.1481 35 1 -0.1521 -14.0986 -0.0082 36 1 0.6055 -15.4514 -1.9515 37 1 0.4714 -14.4496 -4.2231 38 1 -0.4136 -12.1662 -4.4810 39 1 -1.3420 -4.2497 -0.0169 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116142518.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:36 Heat of formation + Delta-G solvation = 165.421264 kcal Electronic energy + Delta-G solvation = -26704.508594 eV Core-core repulsion = 22650.833340 eV Total energy + Delta-G solvation = -4053.675254 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.22467 -41.64085 -41.12108 -39.95360 -36.17333 -35.90123 -34.92884 -33.40897 -32.78125 -32.33760 -31.78890 -29.64703 -28.39515 -26.87363 -24.73408 -24.56767 -24.06102 -22.82917 -22.64474 -21.73277 -21.12208 -19.50585 -18.86777 -17.99598 -17.51162 -17.29244 -17.07203 -16.99943 -16.83152 -16.35372 -15.90068 -15.80834 -15.63331 -15.21288 -15.00711 -14.84841 -14.66429 -14.38299 -14.14924 -13.75928 -13.48233 -13.31330 -13.12826 -12.91861 -12.82970 -12.73561 -12.30195 -12.01480 -11.87784 -11.45375 -11.02024 -10.99656 -10.85800 -10.79753 -10.49752 -10.32302 -10.08064 -10.04148 -8.52288 -8.45502 -6.22177 -0.04682 0.20049 0.31853 0.60211 1.17418 1.30718 1.41430 1.60640 1.74606 2.04253 2.11592 2.27762 2.65823 2.76983 2.87123 3.06385 3.10574 3.26316 3.60991 3.66633 3.88580 4.00339 4.03073 4.17773 4.18758 4.31755 4.41883 4.47753 4.59579 4.59716 4.76116 4.77570 5.02306 5.10087 5.14929 5.23454 5.30132 5.42501 5.44401 5.71550 5.97077 6.31218 6.62626 6.74077 6.94050 6.95692 7.29597 7.46946 7.68802 8.54325 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.034256 B = 0.001814 C = 0.001795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.189033 B =15427.915054 C =15590.858770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C -0.007 4.007 3 Si 1.020 2.980 4 H -0.242 1.242 5 H -0.272 1.272 6 H -0.271 1.271 7 C -0.353 4.353 8 H 0.140 0.860 9 N -0.167 5.167 10 C -0.080 4.080 11 C -0.046 4.046 12 N -0.605 5.605 13 C 0.590 3.410 14 O -0.564 6.564 15 C -0.114 4.114 16 C 0.119 3.881 17 N -0.339 5.339 18 C 0.167 3.833 19 C 0.082 3.918 20 C -0.147 4.147 21 C -0.078 4.078 22 C -0.163 4.163 23 C 0.079 3.921 24 N -0.508 5.508 25 N -0.078 5.078 26 N -0.226 5.226 27 C -0.053 4.053 28 N -0.307 5.307 29 H 0.277 0.723 30 H 0.185 0.815 31 H 0.418 0.582 32 H 0.234 0.766 33 H 0.150 0.850 34 H 0.150 0.850 35 H 0.169 0.831 36 H 0.168 0.832 37 H 0.161 0.839 38 H 0.162 0.838 39 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.135 -31.223 -2.089 31.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.219 4.219 3 Si 0.839 3.161 4 H -0.165 1.165 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.484 4.484 8 H 0.157 0.843 9 N 0.064 4.936 10 C -0.230 4.230 11 C -0.152 4.152 12 N -0.248 5.248 13 C 0.376 3.624 14 O -0.443 6.443 15 C -0.253 4.253 16 C -0.039 4.039 17 N -0.123 5.123 18 C 0.047 3.953 19 C -0.056 4.056 20 C -0.167 4.167 21 C -0.104 4.104 22 C -0.182 4.182 23 C -0.078 4.078 24 N -0.218 5.218 25 N -0.058 5.058 26 N -0.100 5.100 27 C -0.229 4.229 28 N -0.139 5.139 29 H 0.087 0.913 30 H 0.202 0.798 31 H 0.254 0.746 32 H 0.250 0.750 33 H 0.167 0.833 34 H 0.168 0.832 35 H 0.186 0.814 36 H 0.186 0.814 37 H 0.179 0.821 38 H 0.180 0.820 39 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -0.554 -29.466 -2.189 29.553 hybrid contribution 0.165 -0.605 -0.188 0.654 sum -0.389 -30.071 -2.377 30.167 Atomic orbital electron populations 1.70399 1.08384 1.29076 1.37287 1.26892 0.96523 1.04297 0.94141 0.84521 0.78986 0.74339 0.78239 1.16466 1.19714 1.19658 1.20665 0.92967 0.80860 1.53957 0.84267 1.44840 1.03690 1.04668 1.40368 1.21947 0.98725 0.84309 1.18060 1.17335 0.93303 0.82952 1.21636 1.42228 1.09607 1.02726 1.70230 1.17004 0.83910 0.84301 0.77173 1.90674 1.26529 1.74358 1.52723 1.21129 0.90269 0.94366 1.19575 1.23718 1.01908 0.83134 0.95140 1.50446 1.06452 1.07343 1.48049 1.21389 0.97974 0.78105 0.97803 1.21236 0.98512 0.93721 0.92168 1.22283 0.97938 0.94193 1.02335 1.22057 0.95181 1.01254 0.91862 1.22547 0.99355 0.96356 0.99986 1.23035 0.94806 0.92506 0.97484 1.67335 1.16286 1.38206 1.00019 1.81837 0.91606 1.09372 1.23007 1.74582 1.24810 0.99682 1.10931 1.24210 0.98951 0.90744 1.08946 1.78134 0.91875 1.16460 1.27431 0.91334 0.79828 0.74561 0.74957 0.83262 0.83214 0.81383 0.81429 0.82100 0.82050 0.80905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -48.36 11.81 21.66 0.26 -48.10 16 2 C -0.01 -0.37 5.50 84.95 0.47 0.10 16 3 Si 1.02 39.54 29.55 68.60 2.03 41.56 16 4 H -0.24 -8.44 7.11 99.48 0.71 -7.74 16 5 H -0.27 -10.33 7.11 99.48 0.71 -9.63 16 6 H -0.27 -10.29 7.11 99.48 0.71 -9.59 16 7 C -0.35 -19.29 10.25 84.01 0.86 -18.43 16 8 H 0.14 6.64 7.83 -2.91 -0.02 6.62 16 9 N -0.17 -9.61 3.74 -190.00 -0.71 -10.32 16 10 C -0.08 -3.95 11.49 83.38 0.96 -2.99 16 11 C -0.05 -2.28 6.90 37.74 0.26 -2.02 16 12 N -0.61 -24.43 5.46 -306.78 -1.68 -26.11 16 13 C 0.59 23.07 7.79 86.69 0.68 23.74 16 14 O -0.56 -25.11 14.01 -4.11 -0.06 -25.17 16 15 C -0.11 -3.55 6.99 40.81 0.29 -3.26 16 16 C 0.12 2.70 11.27 83.85 0.95 3.65 16 17 N -0.34 -6.67 3.64 -350.82 -1.28 -7.94 16 18 C 0.17 1.62 6.92 85.64 0.59 2.22 16 19 C 0.08 1.12 6.26 42.56 0.27 1.39 16 20 C -0.15 -1.25 9.71 22.36 0.22 -1.03 16 21 C -0.08 -0.57 10.18 22.47 0.23 -0.34 16 22 C -0.16 -1.55 10.11 22.36 0.23 -1.33 16 23 C 0.08 1.19 11.18 84.67 0.95 2.14 16 24 N -0.51 -9.79 10.22 -183.88 -1.88 -11.66 16 25 N -0.08 -2.10 13.63 37.02 0.50 -1.60 16 26 N -0.23 -7.06 12.04 -50.00 -0.60 -7.66 16 27 C -0.05 -2.99 10.85 85.42 0.93 -2.07 16 28 N -0.31 -19.00 10.40 -56.46 -0.59 -19.59 16 29 H 0.28 14.85 8.31 -92.71 -0.77 14.08 16 30 H 0.18 7.38 8.06 -2.91 -0.02 7.35 16 31 H 0.42 14.47 8.51 -92.71 -0.79 13.68 16 32 H 0.23 3.73 8.06 -2.91 -0.02 3.70 16 33 H 0.15 0.42 7.87 -2.39 -0.02 0.41 16 34 H 0.15 0.62 8.08 -2.39 -0.02 0.60 16 35 H 0.17 0.32 7.95 -2.91 -0.02 0.29 16 36 H 0.17 0.18 8.06 -2.91 -0.02 0.15 16 37 H 0.16 0.64 8.06 -2.91 -0.02 0.62 16 38 H 0.16 2.02 8.06 -2.91 -0.02 1.99 16 39 H 0.17 9.61 5.91 -2.91 -0.02 9.60 16 Total: -1.00 -86.87 355.97 4.20 -82.66 By element: Atomic # 1 Polarization: 31.81 SS G_CDS: 0.34 Total: 32.16 kcal Atomic # 6 Polarization: -6.10 SS G_CDS: 7.86 Total: 1.76 kcal Atomic # 7 Polarization: -127.01 SS G_CDS: -5.97 Total: -132.98 kcal Atomic # 8 Polarization: -25.11 SS G_CDS: -0.06 Total: -25.17 kcal Atomic # 14 Polarization: 39.54 SS G_CDS: 2.03 Total: 41.56 kcal Total: -86.87 4.20 -82.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116142518.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 248.085 kcal (2) G-P(sol) polarization free energy of solvation -86.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 161.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 165.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds