Wall clock time and date at job start Tue Mar 31 2020 22:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00138 * 2 1 4 4 H 1.48498 * 109.47359 * 240.00495 * 3 2 1 5 5 H 1.48506 * 109.46938 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46894 * 120.00030 * 3 2 1 7 7 C 1.37874 * 119.99695 * 180.02562 * 2 1 3 8 8 H 1.08011 * 119.99799 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00571 * 359.97438 * 7 2 1 10 10 H 1.08994 * 109.49800 * 300.07298 * 9 7 2 11 11 C 1.53038 * 109.49898 * 180.02562 * 9 7 2 12 12 C 1.53038 * 109.53559 * 178.65518 * 11 9 7 13 13 C 1.53194 * 109.31344 * 61.36587 * 12 11 9 14 14 N 1.46921 * 108.77543 * 305.36046 * 13 12 11 15 15 C 1.34771 * 120.63591 * 233.58252 * 14 13 12 16 16 O 1.21365 * 120.00512 * 171.41807 * 15 14 13 17 17 C 1.49350 * 119.99968 * 351.42510 * 15 14 13 18 18 O 1.21378 * 119.99916 * 353.28777 * 17 15 14 19 19 N 1.34771 * 119.99914 * 173.00594 * 17 15 14 20 20 C 1.39841 * 119.99885 * 173.83994 * 19 17 15 21 21 C 1.38832 * 120.45272 * 148.65790 * 20 19 17 22 22 N 1.31865 * 120.74202 * 179.97438 * 21 20 19 23 23 C 1.32014 * 121.78781 * 359.97438 * 22 21 20 24 24 F 1.35089 * 119.58295 * 179.97438 * 23 22 21 25 25 C 1.38782 * 120.82984 * 0.02562 * 23 22 21 26 26 F 1.35105 * 120.40807 * 180.02562 * 25 23 22 27 27 C 1.38611 * 119.17702 * 359.72806 * 25 23 22 28 28 C 1.46932 * 118.73693 * 53.86516 * 14 13 12 29 29 H 0.96998 * 119.99881 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.45881 * 58.63510 * 11 9 7 31 31 H 1.08996 * 109.45928 * 298.67261 * 11 9 7 32 32 H 1.09001 * 109.50100 * 301.41113 * 12 11 9 33 33 H 1.08999 * 109.49634 * 181.31504 * 12 11 9 34 34 H 1.09007 * 109.58790 * 185.57615 * 13 12 11 35 35 H 1.08994 * 109.58742 * 65.15556 * 13 12 11 36 36 H 0.96997 * 120.00525 * 353.84556 * 19 17 15 37 37 H 1.08008 * 119.63396 * 359.97438 * 21 20 19 38 38 H 1.08000 * 120.81632 * 180.25582 * 27 25 23 39 39 H 1.09001 * 109.58460 * 65.92059 * 28 14 13 40 40 H 1.08994 * 109.58577 * 186.34954 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6236 -2.5571 0.8888 11 6 2.2450 -3.6629 -0.0005 12 6 1.4811 -4.9885 0.0333 13 6 0.6053 -5.1006 -1.2186 14 7 -0.2533 -3.9115 -1.3032 15 6 -1.5897 -4.0365 -1.4252 16 8 -2.3014 -3.0574 -1.3378 17 6 -2.1948 -5.3802 -1.6679 18 8 -1.4803 -6.3389 -1.8765 19 7 -3.5342 -5.5292 -1.6496 20 6 -4.1061 -6.7555 -2.0029 21 6 -5.2968 -7.1700 -1.4217 22 7 -5.8414 -8.3249 -1.7510 23 6 -5.2847 -9.1285 -2.6383 24 9 -5.8810 -10.3020 -2.9419 25 6 -4.0940 -8.7832 -3.2621 26 9 -3.5320 -9.6118 -4.1693 27 6 -3.4919 -7.5750 -2.9476 28 6 0.3732 -2.5831 -1.2585 29 1 -0.4850 0.8400 0.0004 30 1 2.8876 -3.5915 0.8770 31 1 2.8558 -3.6187 -0.9022 32 1 0.8512 -5.0228 0.9222 33 1 2.1898 -5.8163 0.0569 34 1 -0.0145 -5.9949 -1.1521 35 1 1.2388 -5.1578 -2.1037 36 1 -4.1015 -4.7860 -1.3915 37 1 -5.7826 -6.5395 -0.6916 38 1 -2.5673 -7.2780 -3.4201 39 1 0.9881 -2.4392 -2.1469 40 1 -0.3998 -1.8158 -1.2183 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001120996042.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:31 Heat of formation + Delta-G solvation = -96.201078 kcal Electronic energy + Delta-G solvation = -29057.818275 eV Core-core repulsion = 24509.816288 eV Total energy + Delta-G solvation = -4548.001988 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.88790 -48.98250 -41.54309 -40.18819 -38.57837 -37.09729 -35.64887 -33.38802 -32.53690 -31.91887 -30.31165 -29.87940 -26.39269 -25.19071 -24.85711 -24.17947 -22.48243 -21.95660 -20.62699 -19.35422 -18.67572 -18.48236 -18.32256 -17.27699 -16.98137 -16.82034 -16.36928 -16.10088 -15.65787 -15.45989 -15.32230 -15.12356 -14.62794 -14.51226 -14.20495 -13.94433 -13.63419 -13.52165 -13.40085 -13.19841 -13.03289 -12.70821 -12.32376 -11.96989 -11.69648 -11.45971 -11.04001 -10.85487 -10.60197 -10.55518 -10.42125 -10.27833 -10.03169 -10.01476 -9.38930 -9.23082 -8.89790 -8.77321 -8.54890 -8.02020 -6.10395 -4.18894 0.09451 0.37904 1.40628 2.08653 2.83377 2.86060 3.25275 3.28430 3.32041 3.33497 3.47244 3.56426 3.94374 4.12506 4.30061 4.35598 4.45263 4.77796 5.08737 5.19914 5.31267 5.41841 5.49799 5.57962 5.77665 6.00250 6.08730 6.21858 6.28954 6.41745 6.56400 6.57832 6.73345 6.85212 6.90509 6.93615 7.00430 7.39342 7.48891 7.72317 7.80708 7.95201 8.19013 8.34043 8.84723 9.47151 10.95075 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.026140 B = 0.002453 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.907365 B =11412.244973 C =12053.484353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.063 3.937 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.059 0.941 9 C 0.042 3.958 10 H 0.031 0.969 11 C -0.114 4.114 12 C -0.134 4.134 13 C 0.070 3.930 14 N -0.563 5.563 15 C 0.496 3.504 16 O -0.512 6.512 17 C 0.513 3.487 18 O -0.492 6.492 19 N -0.642 5.642 20 C 0.126 3.874 21 C 0.108 3.892 22 N -0.462 5.462 23 C 0.261 3.739 24 F -0.101 7.101 25 C 0.058 3.942 26 F -0.114 7.114 27 C -0.093 4.093 28 C 0.107 3.893 29 H 0.265 0.735 30 H 0.052 0.948 31 H 0.050 0.950 32 H 0.058 0.942 33 H 0.062 0.938 34 H 0.123 0.877 35 H 0.064 0.936 36 H 0.432 0.568 37 H 0.183 0.817 38 H 0.172 0.828 39 H 0.052 0.948 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.462 -14.921 -4.766 17.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.140 4.140 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.560 4.560 8 H 0.077 0.923 9 C 0.023 3.977 10 H 0.049 0.951 11 C -0.151 4.151 12 C -0.172 4.172 13 C -0.052 4.052 14 N -0.295 5.295 15 C 0.276 3.724 16 O -0.389 6.389 17 C 0.298 3.702 18 O -0.366 6.366 19 N -0.290 5.290 20 C 0.028 3.972 21 C -0.052 4.052 22 N -0.175 5.175 23 C 0.105 3.895 24 F -0.080 7.080 25 C 0.034 3.966 26 F -0.092 7.092 27 C -0.121 4.121 28 C -0.012 4.012 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.140 0.860 35 H 0.082 0.918 36 H 0.272 0.728 37 H 0.200 0.800 38 H 0.190 0.810 39 H 0.070 0.930 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -9.182 -15.197 -4.537 18.326 hybrid contribution 1.049 1.091 -0.495 1.592 sum -8.133 -14.106 -5.032 17.043 Atomic orbital electron populations 1.69860 1.05748 1.27088 1.49231 1.25056 0.94930 0.99332 0.94689 0.86624 0.79586 0.82960 0.78664 1.20206 1.21213 1.20227 1.21049 0.92982 0.89988 1.51951 0.92255 1.19036 0.92623 0.92532 0.93526 0.95053 1.21667 0.98597 0.94108 1.00755 1.21959 0.98658 0.99037 0.97512 1.22706 0.94729 0.89334 0.98397 1.48504 1.04148 1.10574 1.66257 1.19424 0.84278 0.87400 0.81263 1.90826 1.59999 1.38437 1.49649 1.21252 0.81873 0.90831 0.76276 1.90534 1.58957 1.41427 1.45695 1.43270 1.07627 1.12387 1.65706 1.18588 0.95042 0.88437 0.95158 1.22499 0.92854 0.91598 0.98265 1.67117 1.33032 1.04406 1.12927 1.18091 0.89895 0.84957 0.96549 1.91665 1.83213 1.42249 1.90917 1.18140 0.93397 0.91285 0.93756 1.91590 1.84061 1.69915 1.63645 1.21648 1.02258 0.92117 0.96124 1.22680 0.98861 0.80181 0.99478 0.92511 0.92880 0.93072 0.92312 0.91934 0.86019 0.91758 0.72751 0.79994 0.81041 0.92978 0.85689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.27 11.41 55.43 0.63 -23.64 16 2 C 0.06 1.66 5.31 -17.82 -0.09 1.56 16 3 Si 0.89 20.39 29.54 -169.99 -5.02 15.37 16 4 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.52 -13.45 8.56 -34.44 -0.29 -13.74 16 8 H 0.06 1.50 7.74 -52.48 -0.41 1.10 16 9 C 0.04 0.98 2.26 -91.42 -0.21 0.77 16 10 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 11 C -0.11 -2.16 5.10 -26.69 -0.14 -2.30 16 12 C -0.13 -2.12 6.08 -26.61 -0.16 -2.28 16 13 C 0.07 1.10 5.98 -3.71 -0.02 1.08 16 14 N -0.56 -10.44 2.97 -173.04 -0.51 -10.95 16 15 C 0.50 8.62 7.73 -11.63 -0.09 8.53 16 16 O -0.51 -10.28 15.95 5.48 0.09 -10.19 16 17 C 0.51 6.86 7.49 -11.63 -0.09 6.77 16 18 O -0.49 -6.79 10.85 5.47 0.06 -6.73 16 19 N -0.64 -6.45 5.33 -10.20 -0.05 -6.51 16 20 C 0.13 1.17 6.32 -83.58 -0.53 0.64 16 21 C 0.11 0.88 11.11 -17.32 -0.19 0.69 16 22 N -0.46 -4.74 10.36 -13.37 -0.14 -4.88 16 23 C 0.26 2.80 8.41 -17.27 -0.15 2.65 16 24 F -0.10 -1.14 17.20 2.25 0.04 -1.10 16 25 C 0.06 0.60 7.35 -39.24 -0.29 0.31 16 26 F -0.11 -1.24 17.19 2.25 0.04 -1.20 16 27 C -0.09 -0.94 8.75 -39.04 -0.34 -1.28 16 28 C 0.11 2.40 5.44 -3.48 -0.02 2.38 16 29 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 30 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.12 1.80 4.31 -54.81 -0.24 1.56 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.43 3.64 8.33 -40.82 -0.34 3.30 16 37 H 0.18 0.89 8.06 -52.48 -0.42 0.47 16 38 H 0.17 1.80 6.43 -52.49 -0.34 1.46 16 39 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.13 3.22 5.15 -51.93 -0.27 2.96 16 LS Contribution 343.35 15.07 5.17 5.17 Total: -1.00 -29.02 343.35 -6.41 -35.43 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -4.11 Total: 3.43 kcal Atomic # 6 Polarization: 8.39 SS G_CDS: -2.61 Total: 5.78 kcal Atomic # 7 Polarization: -45.90 SS G_CDS: -0.07 Total: -45.97 kcal Atomic # 8 Polarization: -17.07 SS G_CDS: 0.15 Total: -16.92 kcal Atomic # 9 Polarization: -2.37 SS G_CDS: 0.08 Total: -2.30 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.02 -6.41 -35.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120996042.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.769 kcal (2) G-P(sol) polarization free energy of solvation -29.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds