Wall clock time and date at job start Tue Mar 31 2020 22:20:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00138 * 2 1 4 4 H 1.48498 * 109.47359 * 240.00495 * 3 2 1 5 5 H 1.48506 * 109.46938 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46894 * 120.00030 * 3 2 1 7 7 C 1.37874 * 119.99695 * 180.02562 * 2 1 3 8 8 H 1.08011 * 119.99799 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00571 * 359.97438 * 7 2 1 10 10 H 1.08994 * 109.49800 * 300.07298 * 9 7 2 11 11 C 1.53038 * 109.49898 * 180.02562 * 9 7 2 12 12 C 1.53038 * 109.53559 * 178.65518 * 11 9 7 13 13 C 1.53194 * 109.31344 * 61.36587 * 12 11 9 14 14 N 1.46921 * 108.77543 * 305.36046 * 13 12 11 15 15 C 1.34771 * 120.63591 * 233.58252 * 14 13 12 16 16 O 1.21365 * 120.00512 * 171.41807 * 15 14 13 17 17 C 1.49350 * 119.99968 * 351.42510 * 15 14 13 18 18 O 1.21378 * 119.99916 * 353.28777 * 17 15 14 19 19 N 1.34771 * 119.99914 * 173.00594 * 17 15 14 20 20 C 1.39841 * 119.99885 * 173.83994 * 19 17 15 21 21 C 1.38832 * 120.45272 * 148.65790 * 20 19 17 22 22 N 1.31865 * 120.74202 * 179.97438 * 21 20 19 23 23 C 1.32014 * 121.78781 * 359.97438 * 22 21 20 24 24 F 1.35089 * 119.58295 * 179.97438 * 23 22 21 25 25 C 1.38782 * 120.82984 * 0.02562 * 23 22 21 26 26 F 1.35105 * 120.40807 * 180.02562 * 25 23 22 27 27 C 1.38611 * 119.17702 * 359.72806 * 25 23 22 28 28 C 1.46932 * 118.73693 * 53.86516 * 14 13 12 29 29 H 0.96998 * 119.99881 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.45881 * 58.63510 * 11 9 7 31 31 H 1.08996 * 109.45928 * 298.67261 * 11 9 7 32 32 H 1.09001 * 109.50100 * 301.41113 * 12 11 9 33 33 H 1.08999 * 109.49634 * 181.31504 * 12 11 9 34 34 H 1.09007 * 109.58790 * 185.57615 * 13 12 11 35 35 H 1.08994 * 109.58742 * 65.15556 * 13 12 11 36 36 H 0.96997 * 120.00525 * 353.84556 * 19 17 15 37 37 H 1.08008 * 119.63396 * 359.97438 * 21 20 19 38 38 H 1.08000 * 120.81632 * 180.25582 * 27 25 23 39 39 H 1.09001 * 109.58460 * 65.92059 * 28 14 13 40 40 H 1.08994 * 109.58577 * 186.34954 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6236 -2.5571 0.8888 11 6 2.2450 -3.6629 -0.0005 12 6 1.4811 -4.9885 0.0333 13 6 0.6053 -5.1006 -1.2186 14 7 -0.2533 -3.9115 -1.3032 15 6 -1.5897 -4.0365 -1.4252 16 8 -2.3014 -3.0574 -1.3378 17 6 -2.1948 -5.3802 -1.6679 18 8 -1.4803 -6.3389 -1.8765 19 7 -3.5342 -5.5292 -1.6496 20 6 -4.1061 -6.7555 -2.0029 21 6 -5.2968 -7.1700 -1.4217 22 7 -5.8414 -8.3249 -1.7510 23 6 -5.2847 -9.1285 -2.6383 24 9 -5.8810 -10.3020 -2.9419 25 6 -4.0940 -8.7832 -3.2621 26 9 -3.5320 -9.6118 -4.1693 27 6 -3.4919 -7.5750 -2.9476 28 6 0.3732 -2.5831 -1.2585 29 1 -0.4850 0.8400 0.0004 30 1 2.8876 -3.5915 0.8770 31 1 2.8558 -3.6187 -0.9022 32 1 0.8512 -5.0228 0.9222 33 1 2.1898 -5.8163 0.0569 34 1 -0.0145 -5.9949 -1.1521 35 1 1.2388 -5.1578 -2.1037 36 1 -4.1015 -4.7860 -1.3915 37 1 -5.7826 -6.5395 -0.6916 38 1 -2.5673 -7.2780 -3.4201 39 1 0.9881 -2.4392 -2.1469 40 1 -0.3998 -1.8158 -1.2183 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120996042.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:30 Heat of formation + Delta-G solvation = -115.001045 kcal Electronic energy + Delta-G solvation = -29058.633503 eV Core-core repulsion = 24509.816288 eV Total energy + Delta-G solvation = -4548.817215 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.71417 -49.81290 -42.56827 -41.24100 -39.81453 -38.57068 -36.67205 -35.17148 -33.49661 -33.33681 -31.57987 -31.13667 -27.80507 -26.88908 -25.76535 -25.22243 -23.67359 -23.44527 -21.82527 -20.77286 -19.57875 -19.39875 -19.31513 -18.56838 -18.19938 -17.82678 -17.80581 -17.20273 -16.98226 -16.49808 -16.31654 -16.28998 -16.07441 -15.59706 -15.35418 -15.25198 -14.96146 -14.65424 -14.50686 -14.33266 -14.23488 -14.01621 -13.90328 -13.50122 -13.10606 -12.84685 -12.55525 -12.36362 -12.26616 -12.17411 -11.76127 -11.65013 -11.36770 -11.14165 -10.97296 -10.86499 -10.52827 -10.21357 -9.65089 -9.54936 -8.10656 -6.26338 -0.73216 -0.39567 0.26032 0.99600 1.44482 1.44525 1.52628 1.89774 2.02688 2.20220 2.32600 2.44148 2.76257 3.00571 3.18135 3.25834 3.40015 3.58728 4.01666 4.11589 4.17165 4.29982 4.37379 4.59190 4.60993 4.64115 4.73577 4.81794 4.99353 5.07110 5.16132 5.23554 5.27489 5.32864 5.44675 5.57425 5.68588 5.87264 5.95195 6.18271 6.27470 6.35811 6.48746 6.82058 6.88783 7.43321 8.92879 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.026140 B = 0.002453 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.907365 B =11412.244973 C =12053.484353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.015 3.985 3 Si 0.954 3.046 4 H -0.269 1.269 5 H -0.288 1.288 6 H -0.272 1.272 7 C -0.537 4.537 8 H 0.060 0.940 9 C 0.040 3.960 10 H -0.007 1.007 11 C -0.108 4.108 12 C -0.127 4.127 13 C 0.071 3.929 14 N -0.572 5.572 15 C 0.492 3.508 16 O -0.546 6.546 17 C 0.528 3.472 18 O -0.494 6.494 19 N -0.623 5.623 20 C 0.122 3.878 21 C 0.131 3.869 22 N -0.475 5.475 23 C 0.256 3.744 24 F -0.107 7.107 25 C 0.053 3.947 26 F -0.119 7.119 27 C -0.091 4.091 28 C 0.121 3.879 29 H 0.262 0.738 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.051 0.949 33 H 0.099 0.901 34 H 0.139 0.861 35 H 0.077 0.923 36 H 0.442 0.558 37 H 0.219 0.781 38 H 0.169 0.831 39 H 0.048 0.952 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.379 -16.180 -4.836 18.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.185 4.185 3 Si 0.780 3.220 4 H -0.194 1.194 5 H -0.213 1.213 6 H -0.197 1.197 7 C -0.575 4.575 8 H 0.078 0.922 9 C 0.020 3.980 10 H 0.011 0.989 11 C -0.146 4.146 12 C -0.165 4.165 13 C -0.049 4.049 14 N -0.304 5.304 15 C 0.274 3.726 16 O -0.425 6.425 17 C 0.312 3.688 18 O -0.369 6.369 19 N -0.271 5.271 20 C 0.024 3.976 21 C -0.030 4.030 22 N -0.188 5.188 23 C 0.101 3.899 24 F -0.086 7.086 25 C 0.030 3.970 26 F -0.098 7.098 27 C -0.120 4.120 28 C 0.000 4.000 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.117 0.883 34 H 0.156 0.844 35 H 0.095 0.905 36 H 0.284 0.716 37 H 0.236 0.764 38 H 0.187 0.813 39 H 0.066 0.934 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -9.113 -16.504 -4.613 19.409 hybrid contribution 0.961 1.459 -0.459 1.807 sum -8.152 -15.045 -5.072 17.847 Atomic orbital electron populations 1.70027 1.07123 1.27450 1.50360 1.25809 0.95615 1.02570 0.94530 0.85667 0.78360 0.79060 0.78921 1.19389 1.21328 1.19687 1.21454 0.93279 0.91400 1.51398 0.92150 1.18968 0.93069 0.93634 0.92287 0.98886 1.21561 0.97821 0.94175 1.01011 1.21929 0.98943 0.98260 0.97325 1.22927 0.94763 0.88445 0.98805 1.48461 1.05181 1.10012 1.66710 1.20036 0.83735 0.88895 0.79980 1.90806 1.60686 1.40241 1.50723 1.20201 0.82949 0.88717 0.76974 1.90526 1.59363 1.40638 1.46349 1.42981 1.06357 1.13145 1.64637 1.18595 0.95564 0.87868 0.95577 1.23027 0.91723 0.90828 0.97387 1.67226 1.33331 1.05054 1.13174 1.18211 0.89982 0.84922 0.96749 1.91648 1.83309 1.42672 1.91005 1.18089 0.93495 0.91409 0.94052 1.91576 1.84162 1.70128 1.63898 1.21654 1.02139 0.92019 0.96144 1.22080 0.97602 0.81630 0.98698 0.92913 0.92934 0.92436 0.93057 0.88288 0.84402 0.90503 0.71619 0.76439 0.81336 0.93368 0.89387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.90 11.41 21.45 0.24 -51.65 16 2 C 0.01 0.79 5.31 84.65 0.45 1.24 16 3 Si 0.95 42.29 29.54 68.60 2.03 44.32 16 4 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 5 H -0.29 -12.69 7.11 99.48 0.71 -11.99 16 6 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 7 C -0.54 -28.21 8.56 25.60 0.22 -27.99 16 8 H 0.06 3.07 7.74 -2.90 -0.02 3.05 16 9 C 0.04 1.89 2.26 -11.32 -0.03 1.87 16 10 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 11 C -0.11 -4.03 5.10 30.62 0.16 -3.88 16 12 C -0.13 -3.77 6.08 30.67 0.19 -3.58 16 13 C 0.07 2.10 5.98 86.36 0.52 2.61 16 14 N -0.57 -21.15 2.97 -819.75 -2.43 -23.58 16 15 C 0.49 16.99 7.73 87.24 0.67 17.67 16 16 O -0.55 -22.35 15.95 -3.29 -0.05 -22.40 16 17 C 0.53 13.23 7.49 87.24 0.65 13.88 16 18 O -0.49 -12.49 10.85 -3.33 -0.04 -12.52 16 19 N -0.62 -11.14 5.33 -304.53 -1.62 -12.77 16 20 C 0.12 1.95 6.32 38.27 0.24 2.19 16 21 C 0.13 1.71 11.11 84.83 0.94 2.66 16 22 N -0.47 -8.60 10.36 -196.23 -2.03 -10.64 16 23 C 0.26 5.09 8.41 84.80 0.71 5.80 16 24 F -0.11 -2.29 17.20 44.97 0.77 -1.52 16 25 C 0.05 1.02 7.35 22.49 0.17 1.19 16 26 F -0.12 -2.47 17.19 44.97 0.77 -1.70 16 27 C -0.09 -1.67 8.75 22.62 0.20 -1.47 16 28 C 0.12 5.57 5.44 86.51 0.47 6.04 16 29 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 30 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.14 3.70 4.31 -48.08 -0.21 3.49 16 35 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.44 6.50 8.33 -92.71 -0.77 5.73 16 37 H 0.22 1.20 8.06 -2.91 -0.02 1.18 16 38 H 0.17 3.23 6.43 -2.91 -0.02 3.21 16 39 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 40 H 0.09 4.75 5.15 -2.39 -0.01 4.74 16 Total: -1.00 -64.73 343.35 3.36 -61.38 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: 0.16 Total: 12.86 kcal Atomic # 6 Polarization: 12.66 SS G_CDS: 5.56 Total: 18.22 kcal Atomic # 7 Polarization: -92.79 SS G_CDS: -5.84 Total: -98.63 kcal Atomic # 8 Polarization: -34.83 SS G_CDS: -0.09 Total: -34.92 kcal Atomic # 9 Polarization: -4.76 SS G_CDS: 1.55 Total: -3.22 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Total: -64.73 3.36 -61.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120996042.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.626 kcal (2) G-P(sol) polarization free energy of solvation -64.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds