Wall clock time and date at job start Tue Mar 31 2020 23:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.87413 * 2 1 4 4 C 1.54333 * 109.87920 * 238.99243 * 2 1 3 5 5 H 1.08998 * 110.72124 * 99.69404 * 4 2 1 6 6 N 1.46498 * 110.71764 * 336.59298 * 4 2 1 7 7 C 1.38997 * 119.99340 * 155.00255 * 6 4 2 8 8 C 1.39069 * 119.69313 * 0.22976 * 7 6 4 9 9 C 1.38376 * 119.15649 * 180.27418 * 8 7 6 10 10 C 1.38766 * 118.53472 * 359.50556 * 9 8 7 11 11 C 1.38365 * 119.30207 * 0.25069 * 10 9 8 12 12 F 1.35108 * 119.60223 * 179.97438 * 11 10 9 13 13 N 1.32139 * 120.79911 * 0.02562 * 11 10 9 14 14 C 1.55159 * 102.93957 * 218.23220 * 4 2 1 15 15 C 1.54912 * 101.57981 * 35.50269 * 14 4 2 16 16 N 1.47011 * 110.01479 * 121.10487 * 2 1 3 17 17 C 1.34779 * 125.64786 * 298.39902 * 16 2 1 18 18 O 1.21272 * 120.00077 * 359.97438 * 17 16 2 19 19 C 1.50707 * 120.00047 * 180.02562 * 17 16 2 20 20 S 1.80997 * 109.46988 * 179.97438 * 19 17 16 21 21 C 1.76203 * 99.99922 * 179.97438 * 20 19 17 22 22 H 1.08002 * 120.00098 * 0.02562 * 21 20 19 23 23 C 1.38796 * 120.00241 * 180.02562 * 21 20 19 24 24 N 1.31632 * 119.99772 * 359.97438 * 23 21 20 25 25 Si 1.86793 * 120.00116 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47710 * 59.99895 * 25 23 21 27 27 H 1.48502 * 109.47328 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.46990 * 299.99647 * 25 23 21 29 29 H 1.08998 * 109.47138 * 181.01518 * 1 2 3 30 30 H 1.09000 * 109.46946 * 301.00956 * 1 2 3 31 31 H 1.09003 * 109.47454 * 61.00832 * 1 2 3 32 32 H 0.96995 * 120.00610 * 335.00865 * 6 4 2 33 33 H 1.07995 * 120.41953 * 0.03355 * 8 7 6 34 34 H 1.08002 * 120.73499 * 179.78534 * 9 8 7 35 35 H 1.07996 * 120.34331 * 180.28052 * 10 9 8 36 36 H 1.09000 * 111.00386 * 153.57415 * 14 4 2 37 37 H 1.08993 * 111.00397 * 277.42812 * 14 4 2 38 38 H 1.09006 * 110.36231 * 204.15420 * 15 14 4 39 39 H 1.08997 * 110.46154 * 81.87552 * 15 14 4 40 40 H 1.08997 * 109.46740 * 299.99429 * 19 17 16 41 41 H 1.08997 * 109.47182 * 59.99254 * 19 17 16 42 42 H 0.97003 * 119.99661 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0548 -0.7477 -1.2440 5 1 2.3474 -0.0431 -2.0225 6 7 1.0485 -1.6856 -1.7478 7 6 1.0612 -2.0666 -3.0844 8 6 2.0350 -1.5573 -3.9367 9 6 2.0339 -1.9397 -5.2665 10 6 1.0616 -2.8301 -5.6994 11 6 0.1254 -3.3020 -4.7966 12 9 -0.8243 -4.1688 -5.2116 13 7 0.1482 -2.9145 -3.5335 14 6 3.2900 -1.5100 -0.6957 15 6 2.8196 -1.8770 0.7339 16 7 2.0332 -0.7136 1.1827 17 6 1.8126 -0.3621 2.4650 18 8 1.1481 0.6201 2.7188 19 6 2.3926 -1.1890 3.5835 20 16 1.9237 -0.4650 5.1748 21 6 2.7112 -1.5983 6.2704 22 1 3.2726 -2.4313 5.8737 23 6 2.6100 -1.4205 7.6432 24 7 1.9262 -0.4050 8.1266 25 14 3.4454 -2.6215 8.8046 26 1 4.9083 -2.6205 8.5497 27 1 3.1869 -2.2133 10.2088 28 1 2.9045 -3.9859 8.5788 29 1 -0.3633 -1.0275 0.0182 30 1 -0.3633 0.5294 0.8808 31 1 -0.3634 0.4981 -0.8989 32 1 0.3733 -2.0406 -1.1487 33 1 2.7803 -0.8691 -3.5661 34 1 2.7762 -1.5571 -5.9515 35 1 1.0363 -3.1516 -6.7301 36 1 3.4887 -2.4060 -1.2837 37 1 4.1664 -0.8627 -0.6645 38 1 3.6780 -2.0299 1.3881 39 1 2.1961 -2.7708 0.7121 40 1 2.0083 -2.2069 3.5197 41 1 3.4791 -1.2048 3.4979 42 1 1.8551 -0.2809 9.0861 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001122941704.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:56 Heat of formation + Delta-G solvation = -21.658448 kcal Electronic energy + Delta-G solvation = -26221.409260 eV Core-core repulsion = 22242.852859 eV Total energy + Delta-G solvation = -3978.556400 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.29205 -40.93471 -39.95390 -37.82747 -35.03976 -33.00352 -32.45462 -31.95822 -31.18986 -29.44679 -28.32586 -26.17449 -25.51007 -23.90678 -23.48527 -22.89540 -20.85103 -19.05966 -18.69312 -18.02310 -17.66929 -16.93353 -16.50049 -16.41421 -16.33017 -15.87219 -15.25909 -14.83548 -14.77452 -14.58305 -14.07121 -13.95356 -13.84552 -13.62295 -13.57996 -13.38911 -12.95768 -12.70652 -12.60957 -12.49645 -12.05607 -11.81806 -11.76834 -11.46471 -11.15106 -11.06467 -11.05552 -10.79143 -10.71286 -10.08237 -10.03042 -9.85196 -9.42851 -9.08343 -8.64239 -8.27581 -8.19655 -6.53483 -6.24024 -3.95122 0.69576 0.92128 2.41946 2.80635 2.99510 3.21695 3.23208 3.27246 3.31954 3.53825 3.57005 4.00902 4.15419 4.18683 4.22661 4.45626 4.54695 4.73947 4.78588 4.88904 4.90978 5.01510 5.11091 5.15051 5.19886 5.32465 5.40385 5.42766 5.45175 5.58044 5.59189 5.68518 5.76815 5.80531 5.86453 6.08725 6.11440 6.16199 6.38342 6.52365 7.03881 7.55541 7.55801 7.57628 8.32404 8.48545 9.21152 10.83315 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.023803 B = 0.002076 C = 0.002032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.039034 B =13485.774475 C =13773.036016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.132 3.868 3 H 0.090 0.910 4 C 0.144 3.856 5 H 0.107 0.893 6 N -0.706 5.706 7 C 0.444 3.556 8 C -0.252 4.252 9 C -0.006 4.006 10 C -0.260 4.260 11 C 0.357 3.643 12 F -0.114 7.114 13 N -0.578 5.578 14 C -0.149 4.149 15 C 0.101 3.899 16 N -0.624 5.624 17 C 0.551 3.449 18 O -0.511 6.511 19 C -0.147 4.147 20 S -0.059 6.059 21 C -0.536 4.536 22 H 0.072 0.928 23 C 0.074 3.926 24 N -0.867 5.867 25 Si 0.919 3.081 26 H -0.274 1.274 27 H -0.283 1.283 28 H -0.274 1.274 29 H 0.055 0.945 30 H 0.079 0.921 31 H 0.065 0.935 32 H 0.411 0.589 33 H 0.141 0.859 34 H 0.143 0.857 35 H 0.142 0.858 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.082 0.918 39 H 0.067 0.933 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.218 -3.147 -28.806 29.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.028 3.972 3 H 0.108 0.892 4 C 0.037 3.963 5 H 0.125 0.875 6 N -0.339 5.339 7 C 0.207 3.793 8 C -0.277 4.277 9 C -0.032 4.032 10 C -0.284 4.284 11 C 0.203 3.797 12 F -0.093 7.093 13 N -0.302 5.302 14 C -0.188 4.188 15 C -0.023 4.023 16 N -0.363 5.363 17 C 0.340 3.660 18 O -0.384 6.384 19 C -0.298 4.298 20 S 0.167 5.833 21 C -0.684 4.684 22 H 0.090 0.910 23 C -0.136 4.136 24 N -0.502 5.502 25 Si 0.745 3.255 26 H -0.199 1.199 27 H -0.208 1.208 28 H -0.199 1.199 29 H 0.074 0.926 30 H 0.098 0.902 31 H 0.083 0.917 32 H 0.251 0.749 33 H 0.159 0.841 34 H 0.161 0.839 35 H 0.160 0.840 36 H 0.107 0.893 37 H 0.109 0.891 38 H 0.101 0.899 39 H 0.086 0.914 40 H 0.106 0.894 41 H 0.107 0.893 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.625 -1.774 -27.536 27.641 hybrid contribution 1.402 -2.108 0.090 2.533 sum 3.027 -3.883 -27.446 27.884 Atomic orbital electron populations 1.22066 0.94281 1.02176 1.03474 1.21700 0.95351 0.96531 0.83657 0.89170 1.22045 0.87860 0.90695 0.95661 0.87538 1.44802 1.34378 1.48692 1.06063 1.17806 0.87989 0.87671 0.85841 1.21479 1.03452 1.08253 0.94508 1.21193 0.95211 0.91917 0.94830 1.21480 0.99534 1.05988 1.01374 1.17662 0.85984 0.87946 0.88106 1.91633 1.62519 1.66239 1.88906 1.66227 1.28593 1.18953 1.16379 1.23329 0.97658 1.01787 0.96039 1.22281 0.95815 0.89084 0.95090 1.48637 1.54011 1.28866 1.04737 1.20022 0.79757 0.84996 0.81262 1.90702 1.38409 1.26887 1.82443 1.23518 1.03622 1.02634 0.99996 1.85394 1.69594 1.37766 0.90530 1.22808 1.38268 1.14241 0.93099 0.91000 1.24991 0.95239 0.95989 0.97345 1.70008 1.38414 1.28110 1.13712 0.86221 0.79638 0.80535 0.79093 1.19926 1.20790 1.19934 0.92631 0.90235 0.91653 0.74938 0.84132 0.83875 0.83982 0.89301 0.89086 0.89920 0.91441 0.89355 0.89307 0.92101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.80 8.49 37.16 0.32 -1.48 16 2 C 0.13 1.35 3.42 -66.95 -0.23 1.13 16 3 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 4 C 0.14 1.00 2.88 -66.09 -0.19 0.81 16 5 H 0.11 0.53 6.35 -51.93 -0.33 0.20 16 6 N -0.71 -5.75 4.67 -52.16 -0.24 -5.99 16 7 C 0.44 3.95 7.65 -155.01 -1.19 2.77 16 8 C -0.25 -1.63 9.24 -39.22 -0.36 -1.99 16 9 C -0.01 -0.03 10.16 -39.34 -0.40 -0.43 16 10 C -0.26 -1.82 10.08 -39.34 -0.40 -2.22 16 11 C 0.36 3.57 8.40 -17.37 -0.15 3.42 16 12 F -0.11 -1.21 17.29 2.25 0.04 -1.17 16 13 N -0.58 -6.42 10.40 -12.77 -0.13 -6.55 16 14 C -0.15 -0.97 6.77 -24.58 -0.17 -1.14 16 15 C 0.10 0.96 6.67 -2.53 -0.02 0.94 16 16 N -0.62 -8.03 3.07 -163.01 -0.50 -8.53 16 17 C 0.55 10.00 7.66 -10.98 -0.08 9.92 16 18 O -0.51 -11.16 14.92 5.56 0.08 -11.08 16 19 C -0.15 -2.92 5.16 36.01 0.19 -2.74 16 20 S -0.06 -1.59 20.57 -107.50 -2.21 -3.81 16 21 C -0.54 -15.12 9.50 30.94 0.29 -14.82 16 22 H 0.07 1.91 7.80 -52.49 -0.41 1.51 16 23 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 24 N -0.87 -25.99 13.22 55.49 0.73 -25.26 16 25 Si 0.92 21.26 29.55 -169.99 -5.02 16.24 16 26 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 27 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 28 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 29 H 0.05 0.61 6.24 -51.93 -0.32 0.28 16 30 H 0.08 1.14 6.91 -51.93 -0.36 0.78 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.41 3.83 6.62 -40.82 -0.27 3.56 16 33 H 0.14 0.61 6.18 -52.49 -0.32 0.28 16 34 H 0.14 0.36 8.06 -52.49 -0.42 -0.07 16 35 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 36 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.08 0.79 7.48 -51.93 -0.39 0.40 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 41 H 0.09 1.63 7.85 -51.92 -0.41 1.22 16 42 H 0.27 7.51 8.31 -40.82 -0.34 7.18 16 LS Contribution 365.30 15.07 5.50 5.50 Total: -1.00 -34.56 365.30 -9.56 -44.12 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -5.33 Total: 0.37 kcal Atomic # 6 Polarization: -1.37 SS G_CDS: -2.48 Total: -3.84 kcal Atomic # 7 Polarization: -46.19 SS G_CDS: -0.14 Total: -46.33 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: 0.08 Total: -11.08 kcal Atomic # 9 Polarization: -1.21 SS G_CDS: 0.04 Total: -1.17 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.56 -9.56 -44.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122941704.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.458 kcal (2) G-P(sol) polarization free energy of solvation -34.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds