Wall clock time and date at job start Tue Mar 31 2020 23:06:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.87413 * 2 1 4 4 C 1.54333 * 109.87920 * 238.99243 * 2 1 3 5 5 H 1.08998 * 110.72124 * 99.69404 * 4 2 1 6 6 N 1.46498 * 110.71764 * 336.59298 * 4 2 1 7 7 C 1.38997 * 119.99340 * 155.00255 * 6 4 2 8 8 C 1.39069 * 119.69313 * 0.22976 * 7 6 4 9 9 C 1.38376 * 119.15649 * 180.27418 * 8 7 6 10 10 C 1.38766 * 118.53472 * 359.50556 * 9 8 7 11 11 C 1.38365 * 119.30207 * 0.25069 * 10 9 8 12 12 F 1.35108 * 119.60223 * 179.97438 * 11 10 9 13 13 N 1.32139 * 120.79911 * 0.02562 * 11 10 9 14 14 C 1.55159 * 102.93957 * 218.23220 * 4 2 1 15 15 C 1.54912 * 101.57981 * 35.50269 * 14 4 2 16 16 N 1.47011 * 110.01479 * 121.10487 * 2 1 3 17 17 C 1.34779 * 125.64786 * 298.39902 * 16 2 1 18 18 O 1.21272 * 120.00077 * 359.97438 * 17 16 2 19 19 C 1.50707 * 120.00047 * 180.02562 * 17 16 2 20 20 S 1.80997 * 109.46988 * 179.97438 * 19 17 16 21 21 C 1.76203 * 99.99922 * 179.97438 * 20 19 17 22 22 H 1.08002 * 120.00098 * 0.02562 * 21 20 19 23 23 C 1.38796 * 120.00241 * 180.02562 * 21 20 19 24 24 N 1.31632 * 119.99772 * 359.97438 * 23 21 20 25 25 Si 1.86793 * 120.00116 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47710 * 59.99895 * 25 23 21 27 27 H 1.48502 * 109.47328 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.46990 * 299.99647 * 25 23 21 29 29 H 1.08998 * 109.47138 * 181.01518 * 1 2 3 30 30 H 1.09000 * 109.46946 * 301.00956 * 1 2 3 31 31 H 1.09003 * 109.47454 * 61.00832 * 1 2 3 32 32 H 0.96995 * 120.00610 * 335.00865 * 6 4 2 33 33 H 1.07995 * 120.41953 * 0.03355 * 8 7 6 34 34 H 1.08002 * 120.73499 * 179.78534 * 9 8 7 35 35 H 1.07996 * 120.34331 * 180.28052 * 10 9 8 36 36 H 1.09000 * 111.00386 * 153.57415 * 14 4 2 37 37 H 1.08993 * 111.00397 * 277.42812 * 14 4 2 38 38 H 1.09006 * 110.36231 * 204.15420 * 15 14 4 39 39 H 1.08997 * 110.46154 * 81.87552 * 15 14 4 40 40 H 1.08997 * 109.46740 * 299.99429 * 19 17 16 41 41 H 1.08997 * 109.47182 * 59.99254 * 19 17 16 42 42 H 0.97003 * 119.99661 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0548 -0.7477 -1.2440 5 1 2.3474 -0.0431 -2.0225 6 7 1.0485 -1.6856 -1.7478 7 6 1.0612 -2.0666 -3.0844 8 6 2.0350 -1.5573 -3.9367 9 6 2.0339 -1.9397 -5.2665 10 6 1.0616 -2.8301 -5.6994 11 6 0.1254 -3.3020 -4.7966 12 9 -0.8243 -4.1688 -5.2116 13 7 0.1482 -2.9145 -3.5335 14 6 3.2900 -1.5100 -0.6957 15 6 2.8196 -1.8770 0.7339 16 7 2.0332 -0.7136 1.1827 17 6 1.8126 -0.3621 2.4650 18 8 1.1481 0.6201 2.7188 19 6 2.3926 -1.1890 3.5835 20 16 1.9237 -0.4650 5.1748 21 6 2.7112 -1.5983 6.2704 22 1 3.2726 -2.4313 5.8737 23 6 2.6100 -1.4205 7.6432 24 7 1.9262 -0.4050 8.1266 25 14 3.4454 -2.6215 8.8046 26 1 4.9083 -2.6205 8.5497 27 1 3.1869 -2.2133 10.2088 28 1 2.9045 -3.9859 8.5788 29 1 -0.3633 -1.0275 0.0182 30 1 -0.3633 0.5294 0.8808 31 1 -0.3634 0.4981 -0.8989 32 1 0.3733 -2.0406 -1.1487 33 1 2.7803 -0.8691 -3.5661 34 1 2.7762 -1.5571 -5.9515 35 1 1.0363 -3.1516 -6.7301 36 1 3.4887 -2.4060 -1.2837 37 1 4.1664 -0.8627 -0.6645 38 1 3.6780 -2.0299 1.3881 39 1 2.1961 -2.7708 0.7121 40 1 2.0083 -2.2069 3.5197 41 1 3.4791 -1.2048 3.4979 42 1 1.8551 -0.2809 9.0861 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001122941704.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:55 Heat of formation + Delta-G solvation = -44.319605 kcal Electronic energy + Delta-G solvation = -26222.391921 eV Core-core repulsion = 22242.852859 eV Total energy + Delta-G solvation = -3979.539062 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.98458 -41.70180 -40.80908 -38.96165 -35.84740 -34.60107 -33.59426 -32.88436 -32.06410 -30.44509 -29.32737 -27.66849 -26.96075 -24.51131 -24.07558 -23.83879 -21.61311 -20.33939 -19.51230 -19.26181 -18.66437 -18.04866 -17.43906 -17.05009 -16.99252 -16.89425 -16.55883 -16.47455 -16.09521 -15.61068 -15.26047 -14.87303 -14.73007 -14.49140 -14.32206 -14.29271 -14.06139 -13.90349 -13.76647 -13.23778 -13.17570 -13.03851 -12.88100 -12.72840 -12.63022 -12.55974 -12.14102 -11.94689 -11.75434 -11.23756 -11.14344 -10.89598 -10.67826 -10.61576 -10.30096 -9.74980 -8.75914 -8.69083 -8.36039 -6.14561 0.13290 0.42369 1.22340 1.42660 1.43389 1.53427 1.56521 1.84393 2.06838 2.26147 2.76375 2.96575 2.97972 3.17861 3.34699 3.50678 3.76873 3.86134 3.93284 3.96810 4.13603 4.20001 4.24122 4.30042 4.30344 4.39917 4.44382 4.54207 4.63040 4.74320 4.83914 4.91346 5.01485 5.03943 5.09738 5.18893 5.31067 5.39643 5.41338 5.58818 5.95809 6.17841 6.34127 6.41831 6.96188 7.04996 7.12299 8.72875 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.023803 B = 0.002076 C = 0.002032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.039034 B =13485.774475 C =13773.036016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.126 3.874 3 H 0.093 0.907 4 C 0.158 3.842 5 H 0.141 0.859 6 N -0.711 5.711 7 C 0.427 3.573 8 C -0.242 4.242 9 C 0.000 4.000 10 C -0.251 4.251 11 C 0.321 3.679 12 F -0.130 7.130 13 N -0.617 5.617 14 C -0.133 4.133 15 C 0.088 3.912 16 N -0.612 5.612 17 C 0.549 3.451 18 O -0.559 6.559 19 C -0.121 4.121 20 S -0.149 6.149 21 C -0.547 4.547 22 H 0.082 0.918 23 C 0.013 3.987 24 N -0.911 5.911 25 Si 0.998 3.002 26 H -0.260 1.260 27 H -0.279 1.279 28 H -0.263 1.263 29 H 0.053 0.947 30 H 0.040 0.960 31 H 0.083 0.917 32 H 0.402 0.598 33 H 0.170 0.830 34 H 0.183 0.817 35 H 0.162 0.838 36 H 0.104 0.896 37 H 0.111 0.889 38 H 0.086 0.914 39 H 0.068 0.932 40 H 0.100 0.900 41 H 0.107 0.893 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.167 -4.118 -31.488 32.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.023 3.977 3 H 0.111 0.889 4 C 0.052 3.948 5 H 0.158 0.842 6 N -0.343 5.343 7 C 0.191 3.809 8 C -0.266 4.266 9 C -0.025 4.025 10 C -0.275 4.275 11 C 0.168 3.832 12 F -0.109 7.109 13 N -0.342 5.342 14 C -0.172 4.172 15 C -0.034 4.034 16 N -0.348 5.348 17 C 0.337 3.663 18 O -0.437 6.437 19 C -0.272 4.272 20 S 0.078 5.922 21 C -0.694 4.694 22 H 0.100 0.900 23 C -0.192 4.192 24 N -0.547 5.547 25 Si 0.820 3.180 26 H -0.185 1.185 27 H -0.204 1.204 28 H -0.188 1.188 29 H 0.072 0.928 30 H 0.059 0.941 31 H 0.102 0.898 32 H 0.239 0.761 33 H 0.188 0.812 34 H 0.201 0.799 35 H 0.180 0.820 36 H 0.123 0.877 37 H 0.130 0.870 38 H 0.105 0.895 39 H 0.087 0.913 40 H 0.118 0.882 41 H 0.126 0.874 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.598 -2.778 -30.298 30.771 hybrid contribution 0.468 -1.813 0.751 2.017 sum 5.066 -4.590 -29.547 30.328 Atomic orbital electron populations 1.21970 0.95240 1.01671 1.02440 1.21939 0.94636 0.97131 0.84023 0.88932 1.22072 0.87299 0.90773 0.94630 0.84196 1.44828 1.34528 1.49034 1.05937 1.18076 0.88580 0.88061 0.86194 1.21843 1.02728 1.07574 0.94475 1.21691 0.95048 0.90630 0.95134 1.21803 0.98586 1.05336 1.01773 1.18064 0.87174 0.89249 0.88686 1.91584 1.63358 1.66972 1.89025 1.66076 1.30247 1.20393 1.17436 1.23328 0.97786 1.02728 0.93405 1.22611 0.95553 0.87794 0.97423 1.48524 1.53012 1.29576 1.03665 1.19675 0.79595 0.84322 0.82718 1.90686 1.40660 1.28846 1.83503 1.23316 1.04734 1.02670 0.96477 1.85559 1.70822 1.40013 0.95793 1.23148 1.38233 1.14358 0.93698 0.90011 1.26133 0.95778 0.97935 0.99312 1.70177 1.40071 1.30299 1.14151 0.85008 0.78850 0.77884 0.76290 1.18480 1.20373 1.18794 0.92810 0.94120 0.89823 0.76057 0.81221 0.79937 0.82013 0.87714 0.87032 0.89515 0.91325 0.88173 0.87439 0.91970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.46 8.49 71.98 0.61 -2.85 16 2 C 0.13 2.39 3.42 45.35 0.15 2.55 16 3 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 4 C 0.16 1.63 2.88 46.18 0.13 1.77 16 5 H 0.14 0.62 6.35 -2.39 -0.02 0.60 16 6 N -0.71 -10.00 4.67 -318.93 -1.49 -11.49 16 7 C 0.43 6.60 7.65 133.03 1.02 7.62 16 8 C -0.24 -2.06 9.24 22.50 0.21 -1.85 16 9 C 0.00 0.00 10.16 22.43 0.23 0.23 16 10 C -0.25 -2.87 10.08 22.43 0.23 -2.65 16 11 C 0.32 6.22 8.40 84.68 0.71 6.93 16 12 F -0.13 -2.85 17.29 44.97 0.78 -2.07 16 13 N -0.62 -13.34 10.40 -194.33 -2.02 -15.36 16 14 C -0.13 -1.17 6.77 31.99 0.22 -0.95 16 15 C 0.09 1.47 6.67 86.86 0.58 2.05 16 16 N -0.61 -15.13 3.07 -788.05 -2.42 -17.54 16 17 C 0.55 20.23 7.66 87.66 0.67 20.90 16 18 O -0.56 -25.59 14.92 -3.01 -0.04 -25.63 16 19 C -0.12 -4.83 5.16 71.24 0.37 -4.46 16 20 S -0.15 -8.30 20.57 -56.49 -1.16 -9.46 16 21 C -0.55 -31.23 9.50 67.95 0.65 -30.58 16 22 H 0.08 4.33 7.80 -2.91 -0.02 4.31 16 23 C 0.01 0.76 5.49 84.86 0.47 1.22 16 24 N -0.91 -56.03 13.22 21.65 0.29 -55.74 16 25 Si 1.00 43.53 29.55 68.60 2.03 45.55 16 26 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 27 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 28 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 29 H 0.05 1.20 6.24 -2.39 -0.01 1.18 16 30 H 0.04 1.23 6.91 -2.39 -0.02 1.22 16 31 H 0.08 1.52 8.14 -2.39 -0.02 1.51 16 32 H 0.40 7.15 6.62 -92.71 -0.61 6.53 16 33 H 0.17 0.39 6.18 -2.91 -0.02 0.37 16 34 H 0.18 -0.22 8.06 -2.91 -0.02 -0.24 16 35 H 0.16 1.10 8.06 -2.91 -0.02 1.08 16 36 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.09 1.41 7.48 -2.38 -0.02 1.40 16 39 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.10 3.73 8.14 -2.40 -0.02 3.71 16 41 H 0.11 3.86 7.85 -2.40 -0.02 3.84 16 42 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 Total: -1.00 -81.36 365.30 2.64 -78.72 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: 0.45 Total: 13.11 kcal Atomic # 6 Polarization: -6.32 SS G_CDS: 6.24 Total: -0.09 kcal Atomic # 7 Polarization: -94.49 SS G_CDS: -5.64 Total: -100.14 kcal Atomic # 8 Polarization: -25.59 SS G_CDS: -0.04 Total: -25.63 kcal Atomic # 9 Polarization: -2.85 SS G_CDS: 0.78 Total: -2.07 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.55 kcal Atomic # 16 Polarization: -8.30 SS G_CDS: -1.16 Total: -9.46 kcal Total: -81.36 2.64 -78.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122941704.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.402 kcal (2) G-P(sol) polarization free energy of solvation -81.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds