Wall clock time and date at job start Tue Mar 31 2020 23:06:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 110.00405 * 2 1 4 4 C 1.54333 * 109.99004 * 238.95438 * 2 1 3 5 5 H 1.08997 * 110.51825 * 336.98559 * 4 2 1 6 6 N 1.46504 * 110.84669 * 100.20507 * 4 2 1 7 7 C 1.38996 * 119.99625 * 200.14899 * 6 4 2 8 8 C 1.39073 * 119.69178 * 359.71762 * 7 6 4 9 9 C 1.38379 * 119.15530 * 179.79488 * 8 7 6 10 10 C 1.38755 * 118.53430 * 0.47693 * 9 8 7 11 11 C 1.38367 * 119.30931 * 359.74974 * 10 9 8 12 12 F 1.35104 * 119.60897 * 179.97438 * 11 10 9 13 13 N 1.32146 * 120.78982 * 0.02562 * 11 10 9 14 14 C 1.55162 * 103.02217 * 218.66641 * 4 2 1 15 15 C 1.54905 * 101.57925 * 35.31097 * 14 4 2 16 16 N 1.47028 * 109.87966 * 121.09335 * 2 1 3 17 17 C 1.34778 * 125.64852 * 298.38839 * 16 2 1 18 18 O 1.21278 * 119.99748 * 359.71996 * 17 16 2 19 19 C 1.50697 * 120.00209 * 179.71810 * 17 16 2 20 20 S 1.80999 * 109.47181 * 180.02562 * 19 17 16 21 21 C 1.76199 * 99.99825 * 179.97438 * 20 19 17 22 22 H 1.08002 * 120.00405 * 0.02562 * 21 20 19 23 23 C 1.38803 * 119.99855 * 179.72221 * 21 20 19 24 24 N 1.31630 * 119.99849 * 180.27695 * 23 21 20 25 25 Si 1.86800 * 120.00065 * 0.28024 * 23 21 20 26 26 H 1.48498 * 109.47118 * 89.99557 * 25 23 21 27 27 H 1.48499 * 109.47134 * 210.00077 * 25 23 21 28 28 H 1.48507 * 109.46904 * 329.99899 * 25 23 21 29 29 H 1.08997 * 109.47189 * 300.36540 * 1 2 3 30 30 H 1.08998 * 109.46580 * 60.35997 * 1 2 3 31 31 H 1.08990 * 109.47429 * 180.36389 * 1 2 3 32 32 H 0.96992 * 120.00350 * 20.14179 * 6 4 2 33 33 H 1.07995 * 120.41956 * 0.02562 * 8 7 6 34 34 H 1.08000 * 120.73009 * 180.22638 * 9 8 7 35 35 H 1.08002 * 120.34462 * 179.72306 * 10 9 8 36 36 H 1.08995 * 111.00381 * 277.23649 * 14 4 2 37 37 H 1.09001 * 110.99997 * 153.38106 * 14 4 2 38 38 H 1.08999 * 110.36854 * 204.15285 * 15 14 4 39 39 H 1.09005 * 110.46032 * 81.87373 * 15 14 4 40 40 H 1.08999 * 109.47278 * 59.99800 * 19 17 16 41 41 H 1.09002 * 109.46837 * 300.00183 * 19 17 16 42 42 H 0.97005 * 119.99878 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9029 1.0243 0.0000 4 6 2.0576 -0.7480 -1.2426 5 1 1.3052 -1.4407 -1.6196 6 7 2.4638 0.1966 -2.2862 7 6 2.5670 -0.2280 -3.6058 8 6 2.2889 -1.5522 -3.9271 9 6 2.3911 -1.9618 -5.2449 10 6 2.7790 -1.0327 -6.1997 11 6 3.0454 0.2680 -5.8101 12 9 3.4242 1.1775 -6.7346 13 7 2.9348 0.6311 -4.5443 14 6 3.2863 -1.5185 -0.6913 15 6 2.8098 -1.8826 0.7370 16 7 2.0299 -0.7141 1.1840 17 6 1.8074 -0.3619 2.4658 18 8 1.1476 0.6240 2.7179 19 6 2.3783 -1.1931 3.5856 20 16 1.9075 -0.4680 5.1758 21 6 2.6842 -1.6069 6.2733 22 1 3.2423 -2.4428 5.8780 23 6 2.5840 -1.4262 7.6458 24 7 3.1688 -2.2740 8.4656 25 14 1.6193 0.0199 8.3296 26 1 0.2031 -0.3798 8.5291 27 1 2.2045 0.4348 9.6299 28 1 1.6835 1.1543 7.3734 29 1 -0.3633 0.5195 0.8867 30 1 -0.3632 0.5082 -0.8932 31 1 -0.3634 -1.0275 0.0065 32 1 2.6605 1.1181 -2.0565 33 1 1.9934 -2.2509 -3.1586 34 1 2.1775 -2.9832 -5.5235 35 1 2.8725 -1.3218 -7.2361 36 1 4.1669 -0.8771 -0.6578 37 1 3.4806 -2.4158 -1.2789 38 1 3.6654 -2.0412 1.3935 39 1 2.1804 -2.7722 0.7135 40 1 3.4650 -1.2159 3.5037 41 1 1.9877 -2.2086 3.5199 42 1 3.0985 -2.1479 9.4249 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001122941705.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:59 Heat of formation + Delta-G solvation = -27.440811 kcal Electronic energy + Delta-G solvation = -26017.488000 eV Core-core repulsion = 22038.680857 eV Total energy + Delta-G solvation = -3978.807143 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.33974 -40.89392 -40.05083 -37.87784 -35.32615 -33.05884 -32.47602 -32.05332 -31.22245 -29.64735 -28.56498 -25.82809 -25.65283 -24.09871 -23.23482 -22.98752 -21.28700 -19.41398 -18.54338 -18.02125 -17.69237 -16.98533 -16.68549 -16.41534 -16.29142 -15.76259 -15.45627 -15.13746 -14.92427 -14.45224 -14.20107 -14.01582 -13.90303 -13.82792 -13.54088 -13.19329 -13.09907 -12.82086 -12.79953 -12.57011 -12.26114 -11.98874 -11.88262 -11.65579 -11.30544 -11.15728 -11.03921 -10.72461 -10.65485 -10.14734 -10.07104 -9.89438 -9.57551 -9.04052 -8.75507 -8.54605 -8.25670 -6.96743 -6.32500 -4.04806 0.64911 0.87357 2.21983 2.67806 2.84707 3.12536 3.27328 3.30215 3.47444 3.50318 3.56134 3.90652 4.13101 4.19204 4.29680 4.41203 4.49681 4.62111 4.68263 4.73702 4.84023 4.85152 5.02488 5.06549 5.14883 5.20540 5.28103 5.35543 5.38604 5.41287 5.51817 5.64779 5.70823 5.74988 5.75859 5.94239 6.04713 6.08174 6.27261 6.45504 6.95496 7.43509 7.49011 7.90400 8.33228 8.37706 9.13539 10.76596 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.034055 B = 0.001979 C = 0.001935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.005358 B =14145.286696 C =14465.136383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.136 3.864 3 H 0.080 0.920 4 C 0.145 3.855 5 H 0.104 0.896 6 N -0.708 5.708 7 C 0.444 3.556 8 C -0.250 4.250 9 C -0.006 4.006 10 C -0.257 4.257 11 C 0.357 3.643 12 F -0.114 7.114 13 N -0.578 5.578 14 C -0.149 4.149 15 C 0.100 3.900 16 N -0.621 5.621 17 C 0.550 3.450 18 O -0.512 6.512 19 C -0.118 4.118 20 S -0.141 6.141 21 C -0.522 4.522 22 H 0.088 0.912 23 C 0.096 3.904 24 N -0.879 5.879 25 Si 0.856 3.144 26 H -0.267 1.267 27 H -0.274 1.274 28 H -0.235 1.235 29 H 0.078 0.922 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.409 0.591 33 H 0.141 0.859 34 H 0.145 0.855 35 H 0.143 0.857 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.074 0.926 40 H 0.097 0.903 41 H 0.097 0.903 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.207 -1.879 -29.271 29.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.031 3.969 3 H 0.098 0.902 4 C 0.039 3.961 5 H 0.121 0.879 6 N -0.339 5.339 7 C 0.208 3.792 8 C -0.275 4.275 9 C -0.031 4.031 10 C -0.282 4.282 11 C 0.202 3.798 12 F -0.093 7.093 13 N -0.302 5.302 14 C -0.189 4.189 15 C -0.024 4.024 16 N -0.359 5.359 17 C 0.338 3.662 18 O -0.386 6.386 19 C -0.269 4.269 20 S 0.085 5.915 21 C -0.669 4.669 22 H 0.106 0.894 23 C -0.113 4.113 24 N -0.516 5.516 25 Si 0.681 3.319 26 H -0.192 1.192 27 H -0.199 1.199 28 H -0.159 1.159 29 H 0.097 0.903 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.246 0.754 33 H 0.159 0.841 34 H 0.162 0.838 35 H 0.161 0.839 36 H 0.103 0.897 37 H 0.108 0.892 38 H 0.104 0.896 39 H 0.092 0.908 40 H 0.115 0.885 41 H 0.115 0.885 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.029 0.305 -28.272 28.347 hybrid contribution 0.548 -0.962 -0.085 1.111 sum -1.481 -0.658 -28.357 28.403 Atomic orbital electron populations 1.22150 0.93799 1.02708 1.03465 1.21512 0.95192 0.96462 0.83741 0.90172 1.22112 0.96642 0.90857 0.86498 0.87862 1.44515 1.73240 1.13691 1.02464 1.17741 0.88647 0.88166 0.84655 1.21490 1.11954 0.95707 0.98329 1.21209 0.91106 0.99431 0.91380 1.21496 1.11741 0.92532 1.02389 1.17653 0.93597 0.84900 0.83611 1.91633 1.87979 1.67444 1.62206 1.66205 1.24014 1.39275 1.00669 1.23339 0.98455 1.01465 0.95602 1.22333 0.96100 0.89001 0.94956 1.48472 1.54212 1.28660 1.04514 1.20002 0.79726 0.85097 0.81331 1.90704 1.38655 1.26764 1.82506 1.23261 1.04136 1.02403 0.97051 1.84811 1.71618 1.39541 0.95516 1.22295 1.38470 1.13329 0.92817 0.89365 1.24714 0.94513 0.96252 0.95828 1.69937 1.42186 1.35881 1.03566 0.86738 0.80812 0.84116 0.80205 1.19189 1.19913 1.15929 0.90313 0.91763 0.92157 0.75362 0.84122 0.83757 0.83890 0.89651 0.89206 0.89592 0.90758 0.88509 0.88489 0.91908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.67 9.11 37.16 0.34 -1.33 16 2 C 0.14 1.35 3.21 -66.95 -0.21 1.13 16 3 H 0.08 0.87 7.69 -51.93 -0.40 0.47 16 4 C 0.15 1.00 2.37 -66.09 -0.16 0.84 16 5 H 0.10 0.58 6.35 -51.93 -0.33 0.25 16 6 N -0.71 -5.38 5.38 -52.16 -0.28 -5.66 16 7 C 0.44 3.82 7.65 -155.01 -1.19 2.63 16 8 C -0.25 -1.59 9.24 -39.22 -0.36 -1.95 16 9 C -0.01 -0.03 10.16 -39.34 -0.40 -0.43 16 10 C -0.26 -1.73 10.08 -39.34 -0.40 -2.13 16 11 C 0.36 3.41 8.41 -17.37 -0.15 3.26 16 12 F -0.11 -1.15 17.29 2.25 0.04 -1.11 16 13 N -0.58 -6.14 10.40 -12.77 -0.13 -6.27 16 14 C -0.15 -0.96 6.77 -24.58 -0.17 -1.12 16 15 C 0.10 0.84 6.69 -2.53 -0.02 0.83 16 16 N -0.62 -7.52 3.06 -163.01 -0.50 -8.02 16 17 C 0.55 9.39 7.66 -10.99 -0.08 9.31 16 18 O -0.51 -10.59 14.91 5.56 0.08 -10.51 16 19 C -0.12 -2.20 5.16 36.00 0.19 -2.02 16 20 S -0.14 -3.50 18.54 -107.50 -1.99 -5.50 16 21 C -0.52 -14.74 10.04 30.94 0.31 -14.43 16 22 H 0.09 2.59 8.03 -52.49 -0.42 2.17 16 23 C 0.10 2.76 5.50 -17.43 -0.10 2.67 16 24 N -0.88 -26.17 13.97 55.49 0.78 -25.39 16 25 Si 0.86 21.51 27.74 -169.99 -4.72 16.80 16 26 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 27 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16 28 H -0.24 -5.90 6.73 56.52 0.38 -5.52 16 29 H 0.08 1.06 6.89 -51.93 -0.36 0.70 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.41 3.24 8.44 -40.82 -0.34 2.89 16 33 H 0.14 0.62 6.29 -52.49 -0.33 0.29 16 34 H 0.14 0.34 8.06 -52.49 -0.42 -0.08 16 35 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 36 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.09 0.74 7.48 -51.93 -0.39 0.35 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.10 1.69 7.85 -51.92 -0.41 1.28 16 41 H 0.10 1.68 8.14 -51.91 -0.42 1.26 16 42 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 366.57 15.07 5.52 5.52 Total: -1.00 -34.20 366.57 -9.11 -43.30 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: -5.52 Total: -0.43 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: -2.39 Total: -2.74 kcal Atomic # 7 Polarization: -45.21 SS G_CDS: -0.14 Total: -45.34 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: 0.08 Total: -10.51 kcal Atomic # 9 Polarization: -1.15 SS G_CDS: 0.04 Total: -1.11 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.72 Total: 16.80 kcal Atomic # 16 Polarization: -3.50 SS G_CDS: -1.99 Total: -5.50 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.20 -9.11 -43.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122941705.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.864 kcal (2) G-P(sol) polarization free energy of solvation -34.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds