Wall clock time and date at job start Tue Mar 31 2020 23:06:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 110.00405 * 2 1 4 4 C 1.54333 * 109.99004 * 238.95438 * 2 1 3 5 5 H 1.08997 * 110.51825 * 336.98559 * 4 2 1 6 6 N 1.46504 * 110.84669 * 100.20507 * 4 2 1 7 7 C 1.38996 * 119.99625 * 200.14899 * 6 4 2 8 8 C 1.39073 * 119.69178 * 359.71762 * 7 6 4 9 9 C 1.38379 * 119.15530 * 179.79488 * 8 7 6 10 10 C 1.38755 * 118.53430 * 0.47693 * 9 8 7 11 11 C 1.38367 * 119.30931 * 359.74974 * 10 9 8 12 12 F 1.35104 * 119.60897 * 179.97438 * 11 10 9 13 13 N 1.32146 * 120.78982 * 0.02562 * 11 10 9 14 14 C 1.55162 * 103.02217 * 218.66641 * 4 2 1 15 15 C 1.54905 * 101.57925 * 35.31097 * 14 4 2 16 16 N 1.47028 * 109.87966 * 121.09335 * 2 1 3 17 17 C 1.34778 * 125.64852 * 298.38839 * 16 2 1 18 18 O 1.21278 * 119.99748 * 359.71996 * 17 16 2 19 19 C 1.50697 * 120.00209 * 179.71810 * 17 16 2 20 20 S 1.80999 * 109.47181 * 180.02562 * 19 17 16 21 21 C 1.76199 * 99.99825 * 179.97438 * 20 19 17 22 22 H 1.08002 * 120.00405 * 0.02562 * 21 20 19 23 23 C 1.38803 * 119.99855 * 179.72221 * 21 20 19 24 24 N 1.31630 * 119.99849 * 180.27695 * 23 21 20 25 25 Si 1.86800 * 120.00065 * 0.28024 * 23 21 20 26 26 H 1.48498 * 109.47118 * 89.99557 * 25 23 21 27 27 H 1.48499 * 109.47134 * 210.00077 * 25 23 21 28 28 H 1.48507 * 109.46904 * 329.99899 * 25 23 21 29 29 H 1.08997 * 109.47189 * 300.36540 * 1 2 3 30 30 H 1.08998 * 109.46580 * 60.35997 * 1 2 3 31 31 H 1.08990 * 109.47429 * 180.36389 * 1 2 3 32 32 H 0.96992 * 120.00350 * 20.14179 * 6 4 2 33 33 H 1.07995 * 120.41956 * 0.02562 * 8 7 6 34 34 H 1.08000 * 120.73009 * 180.22638 * 9 8 7 35 35 H 1.08002 * 120.34462 * 179.72306 * 10 9 8 36 36 H 1.08995 * 111.00381 * 277.23649 * 14 4 2 37 37 H 1.09001 * 110.99997 * 153.38106 * 14 4 2 38 38 H 1.08999 * 110.36854 * 204.15285 * 15 14 4 39 39 H 1.09005 * 110.46032 * 81.87373 * 15 14 4 40 40 H 1.08999 * 109.47278 * 59.99800 * 19 17 16 41 41 H 1.09002 * 109.46837 * 300.00183 * 19 17 16 42 42 H 0.97005 * 119.99878 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9029 1.0243 0.0000 4 6 2.0576 -0.7480 -1.2426 5 1 1.3052 -1.4407 -1.6196 6 7 2.4638 0.1966 -2.2862 7 6 2.5670 -0.2280 -3.6058 8 6 2.2889 -1.5522 -3.9271 9 6 2.3911 -1.9618 -5.2449 10 6 2.7790 -1.0327 -6.1997 11 6 3.0454 0.2680 -5.8101 12 9 3.4242 1.1775 -6.7346 13 7 2.9348 0.6311 -4.5443 14 6 3.2863 -1.5185 -0.6913 15 6 2.8098 -1.8826 0.7370 16 7 2.0299 -0.7141 1.1840 17 6 1.8074 -0.3619 2.4658 18 8 1.1476 0.6240 2.7179 19 6 2.3783 -1.1931 3.5856 20 16 1.9075 -0.4680 5.1758 21 6 2.6842 -1.6069 6.2733 22 1 3.2423 -2.4428 5.8780 23 6 2.5840 -1.4262 7.6458 24 7 3.1688 -2.2740 8.4656 25 14 1.6193 0.0199 8.3296 26 1 0.2031 -0.3798 8.5291 27 1 2.2045 0.4348 9.6299 28 1 1.6835 1.1543 7.3734 29 1 -0.3633 0.5195 0.8867 30 1 -0.3632 0.5082 -0.8932 31 1 -0.3634 -1.0275 0.0065 32 1 2.6605 1.1181 -2.0565 33 1 1.9934 -2.2509 -3.1586 34 1 2.1775 -2.9832 -5.5235 35 1 2.8725 -1.3218 -7.2361 36 1 4.1669 -0.8771 -0.6578 37 1 3.4806 -2.4158 -1.2789 38 1 3.6654 -2.0412 1.3935 39 1 2.1804 -2.7722 0.7135 40 1 3.4650 -1.2159 3.5037 41 1 1.9877 -2.2086 3.5199 42 1 3.0985 -2.1479 9.4249 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001122941705.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:58 Heat of formation + Delta-G solvation = -50.110248 kcal Electronic energy + Delta-G solvation = -26018.471020 eV Core-core repulsion = 22038.680857 eV Total energy + Delta-G solvation = -3979.790163 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.99976 -41.62532 -40.87713 -38.92817 -36.06739 -34.67540 -33.62781 -32.94709 -32.03325 -30.52116 -29.57518 -27.84957 -26.51401 -24.68930 -23.87386 -23.80228 -21.95810 -20.57020 -19.60660 -19.12554 -18.63224 -18.07265 -17.49381 -17.12214 -17.06984 -16.93401 -16.54419 -16.39877 -16.15613 -15.68200 -15.16395 -15.03158 -14.91325 -14.63853 -14.54720 -14.09653 -14.05790 -13.93887 -13.71787 -13.34328 -13.31123 -13.13298 -13.01662 -12.79960 -12.75151 -12.56943 -12.31387 -11.89108 -11.82159 -11.24449 -11.17642 -10.96576 -10.71414 -10.63381 -10.53472 -9.77763 -9.00926 -8.79459 -8.51989 -6.22843 0.10759 0.39617 0.94439 1.30511 1.41044 1.49452 1.51895 1.73383 2.14165 2.24274 2.67517 2.74034 2.86288 2.94819 3.20935 3.49401 3.73427 3.77307 3.88399 3.93441 4.13459 4.16518 4.21434 4.25365 4.31180 4.35852 4.41699 4.54497 4.66970 4.76239 4.80380 4.92155 4.97906 5.02604 5.13006 5.20718 5.29357 5.36355 5.56196 5.70461 5.91736 6.11182 6.30194 6.38489 6.92566 6.93334 7.05705 8.60144 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.034055 B = 0.001979 C = 0.001935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.005358 B =14145.286696 C =14465.136383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.131 3.869 3 H 0.066 0.934 4 C 0.161 3.839 5 H 0.129 0.871 6 N -0.711 5.711 7 C 0.428 3.572 8 C -0.243 4.243 9 C 0.000 4.000 10 C -0.249 4.249 11 C 0.322 3.678 12 F -0.129 7.129 13 N -0.615 5.615 14 C -0.138 4.138 15 C 0.089 3.911 16 N -0.610 5.610 17 C 0.550 3.450 18 O -0.558 6.558 19 C -0.102 4.102 20 S -0.177 6.177 21 C -0.527 4.527 22 H 0.064 0.936 23 C 0.046 3.954 24 N -0.915 5.915 25 Si 0.913 3.087 26 H -0.262 1.262 27 H -0.260 1.260 28 H -0.238 1.238 29 H 0.041 0.959 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.404 0.596 33 H 0.168 0.832 34 H 0.184 0.816 35 H 0.164 0.836 36 H 0.074 0.926 37 H 0.122 0.878 38 H 0.085 0.915 39 H 0.099 0.901 40 H 0.110 0.890 41 H 0.114 0.886 42 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.693 -3.770 -31.531 31.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.027 3.973 3 H 0.084 0.916 4 C 0.055 3.945 5 H 0.146 0.854 6 N -0.342 5.342 7 C 0.191 3.809 8 C -0.267 4.267 9 C -0.025 4.025 10 C -0.273 4.273 11 C 0.169 3.831 12 F -0.108 7.108 13 N -0.340 5.340 14 C -0.177 4.177 15 C -0.033 4.033 16 N -0.346 5.346 17 C 0.338 3.662 18 O -0.436 6.436 19 C -0.253 4.253 20 S 0.049 5.951 21 C -0.674 4.674 22 H 0.082 0.918 23 C -0.160 4.160 24 N -0.553 5.553 25 Si 0.735 3.265 26 H -0.187 1.187 27 H -0.184 1.184 28 H -0.162 1.162 29 H 0.060 0.940 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.240 0.760 33 H 0.186 0.814 34 H 0.201 0.799 35 H 0.181 0.819 36 H 0.093 0.907 37 H 0.141 0.859 38 H 0.103 0.897 39 H 0.117 0.883 40 H 0.128 0.872 41 H 0.132 0.868 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.491 -1.622 -30.591 30.735 hybrid contribution 0.747 -0.463 0.436 0.980 sum -1.744 -2.084 -30.155 30.277 Atomic orbital electron populations 1.22075 0.93805 1.03176 1.02442 1.21661 0.95204 0.96215 0.84244 0.91635 1.22037 0.97304 0.90317 0.84881 0.85376 1.44512 1.73582 1.13589 1.02491 1.18011 0.89442 0.89041 0.84358 1.21844 1.10467 0.94860 0.99545 1.21699 0.89465 1.00761 0.90553 1.21820 1.10222 0.91379 1.03912 1.18049 0.95652 0.85952 0.83438 1.91587 1.88425 1.68165 1.62603 1.66059 1.25290 1.41005 1.01608 1.23329 0.97568 1.02462 0.94355 1.22713 0.96162 0.88287 0.96126 1.48368 1.53251 1.29523 1.03434 1.19626 0.79584 0.84398 0.82627 1.90690 1.40894 1.28563 1.83497 1.23208 1.05064 1.02948 0.94058 1.84758 1.71663 1.39741 0.98925 1.22434 1.38023 1.13192 0.93767 0.91764 1.25540 0.95474 0.98643 0.96296 1.70011 1.43575 1.37565 1.04160 0.85890 0.79709 0.81052 0.79861 1.18651 1.18421 1.16235 0.94028 0.90105 0.90833 0.76011 0.81437 0.79898 0.81872 0.90694 0.85948 0.89670 0.88250 0.87209 0.86826 0.91378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.99 9.11 71.98 0.66 -2.34 16 2 C 0.13 2.40 3.21 45.34 0.15 2.54 16 3 H 0.07 1.42 7.69 -2.39 -0.02 1.40 16 4 C 0.16 1.68 2.37 46.18 0.11 1.79 16 5 H 0.13 0.78 6.35 -2.39 -0.02 0.76 16 6 N -0.71 -9.44 5.38 -318.92 -1.72 -11.15 16 7 C 0.43 6.41 7.65 133.04 1.02 7.43 16 8 C -0.24 -2.07 9.24 22.50 0.21 -1.86 16 9 C 0.00 0.00 10.16 22.43 0.23 0.23 16 10 C -0.25 -2.71 10.08 22.42 0.23 -2.48 16 11 C 0.32 5.95 8.41 84.68 0.71 6.66 16 12 F -0.13 -2.67 17.29 44.97 0.78 -1.89 16 13 N -0.61 -12.73 10.40 -194.33 -2.02 -14.75 16 14 C -0.14 -1.24 6.77 31.99 0.22 -1.02 16 15 C 0.09 1.21 6.69 86.85 0.58 1.79 16 16 N -0.61 -13.76 3.06 -788.03 -2.41 -16.17 16 17 C 0.55 18.49 7.66 87.66 0.67 19.17 16 18 O -0.56 -23.46 14.91 -3.02 -0.05 -23.51 16 19 C -0.10 -3.74 5.16 71.23 0.37 -3.37 16 20 S -0.18 -8.85 18.54 -56.49 -1.05 -9.90 16 21 C -0.53 -30.17 10.04 67.96 0.68 -29.49 16 22 H 0.06 3.86 8.03 -2.91 -0.02 3.84 16 23 C 0.05 2.67 5.50 84.86 0.47 3.14 16 24 N -0.92 -55.07 13.97 21.65 0.30 -54.77 16 25 Si 0.91 44.70 27.74 68.60 1.90 46.60 16 26 H -0.26 -12.49 7.11 99.48 0.71 -11.79 16 27 H -0.26 -11.96 7.11 99.48 0.71 -11.26 16 28 H -0.24 -11.71 6.73 99.48 0.67 -11.04 16 29 H 0.04 1.12 6.89 -2.39 -0.02 1.11 16 30 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.40 6.18 8.44 -92.71 -0.78 5.40 16 33 H 0.17 0.45 6.29 -2.91 -0.02 0.44 16 34 H 0.18 -0.25 8.06 -2.91 -0.02 -0.27 16 35 H 0.16 1.00 8.06 -2.91 -0.02 0.98 16 36 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.12 0.41 8.14 -2.39 -0.02 0.39 16 38 H 0.08 1.22 7.48 -2.39 -0.02 1.21 16 39 H 0.10 0.96 8.14 -2.38 -0.02 0.94 16 40 H 0.11 3.73 7.85 -2.39 -0.02 3.71 16 41 H 0.11 3.78 8.14 -2.39 -0.02 3.76 16 42 H 0.28 15.42 8.31 -92.70 -0.77 14.65 16 Total: -1.00 -78.13 366.57 2.26 -75.86 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: 0.24 Total: 7.50 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: 6.29 Total: 2.19 kcal Atomic # 7 Polarization: -91.00 SS G_CDS: -5.85 Total: -96.85 kcal Atomic # 8 Polarization: -23.46 SS G_CDS: -0.05 Total: -23.51 kcal Atomic # 9 Polarization: -2.67 SS G_CDS: 0.78 Total: -1.89 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 1.90 Total: 46.60 kcal Atomic # 16 Polarization: -8.85 SS G_CDS: -1.05 Total: -9.90 kcal Total: -78.13 2.26 -75.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122941705.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.754 kcal (2) G-P(sol) polarization free energy of solvation -78.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds