Wall clock time and date at job start Tue Mar 31 2020 23:07:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.87732 * 2 1 4 4 C 1.54321 * 110.01106 * 121.10079 * 2 1 3 5 5 H 1.08999 * 110.72166 * 23.14088 * 4 2 1 6 6 N 1.46504 * 110.72035 * 260.03981 * 4 2 1 7 7 C 1.39002 * 119.99645 * 154.99740 * 6 4 2 8 8 C 1.39068 * 119.68814 * 0.02562 * 7 6 4 9 9 C 1.38375 * 119.15311 * 179.97438 * 8 7 6 10 10 C 1.38763 * 118.53488 * 359.97438 * 9 8 7 11 11 C 1.38368 * 119.30771 * 359.97438 * 10 9 8 12 12 F 1.35101 * 119.60488 * 180.02562 * 11 10 9 13 13 N 1.32140 * 120.78814 * 359.75084 * 11 10 9 14 14 C 1.55157 * 102.94254 * 141.68283 * 4 2 1 15 15 C 1.55133 * 101.48424 * 324.32880 * 14 4 2 16 16 N 1.47029 * 109.88192 * 238.98563 * 2 1 3 17 17 C 1.34778 * 125.64469 * 61.45308 * 16 2 1 18 18 O 1.21278 * 120.00140 * 359.97438 * 17 16 2 19 19 C 1.50703 * 119.99723 * 180.02562 * 17 16 2 20 20 S 1.80993 * 109.47026 * 179.97438 * 19 17 16 21 21 C 1.76201 * 99.99993 * 179.97438 * 20 19 17 22 22 H 1.08002 * 120.00153 * 0.02562 * 21 20 19 23 23 C 1.38798 * 120.00523 * 179.97438 * 21 20 19 24 24 N 1.31634 * 119.99397 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00627 * 179.97438 * 23 21 20 26 26 H 1.48490 * 109.47339 * 180.02562 * 25 23 21 27 27 H 1.48493 * 109.47239 * 300.00544 * 25 23 21 28 28 H 1.48504 * 109.46636 * 60.00103 * 25 23 21 29 29 H 1.08990 * 109.47464 * 179.56022 * 1 2 3 30 30 H 1.09002 * 109.46935 * 299.56669 * 1 2 3 31 31 H 1.09004 * 109.46874 * 59.55336 * 1 2 3 32 32 H 0.96995 * 120.00382 * 335.00356 * 6 4 2 33 33 H 1.08000 * 120.42383 * 359.97438 * 8 7 6 34 34 H 1.07999 * 120.73576 * 179.97438 * 9 8 7 35 35 H 1.07998 * 120.34409 * 179.97438 * 10 9 8 36 36 H 1.08994 * 111.00771 * 82.57296 * 14 4 2 37 37 H 1.09007 * 111.00409 * 206.42526 * 14 4 2 38 38 H 1.08998 * 110.49767 * 278.45564 * 15 14 4 39 39 H 1.09005 * 110.34063 * 156.05944 * 15 14 4 40 40 H 1.09001 * 109.47144 * 59.99673 * 19 17 16 41 41 H 1.09006 * 109.47011 * 299.99863 * 19 17 16 42 42 H 0.97005 * 119.99723 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0250 0.0000 4 6 2.0581 -0.7490 1.2416 5 1 1.3092 -1.4450 1.6196 6 7 2.4581 0.1969 2.2864 7 6 2.4635 -0.2002 3.6184 8 6 2.0884 -1.4971 3.9520 9 6 2.0983 -1.8809 5.2814 10 6 2.4849 -0.9517 6.2367 11 6 2.8471 0.3219 5.8351 12 9 3.2250 1.2312 6.7601 13 7 2.8329 0.6578 4.5572 14 6 3.2918 -1.5108 0.6893 15 6 2.8129 -1.8794 -0.7395 16 7 2.0300 -0.7124 -1.1850 17 6 1.8049 -0.3601 -2.4663 18 8 1.1379 0.6212 -2.7172 19 6 2.3811 -1.1864 -3.5872 20 16 1.9054 -0.4625 -5.1764 21 6 2.6905 -1.5941 -6.2753 22 1 3.2539 -2.4269 -5.8811 23 6 2.5842 -1.4159 -7.6477 24 7 1.8971 -0.4011 -8.1282 25 14 3.4171 -2.6151 -8.8128 26 1 3.1540 -2.2060 -10.2158 27 1 4.8809 -2.6121 -8.5630 28 1 2.8790 -3.9805 -8.5856 29 1 -0.3634 -1.0275 -0.0079 30 1 -0.3633 0.5071 0.8939 31 1 -0.3633 0.5208 -0.8860 32 1 2.7192 1.1003 2.0486 33 1 1.7932 -2.1959 3.1832 34 1 1.8114 -2.8815 5.5692 35 1 2.5029 -1.2198 7.2827 36 1 4.1681 -0.8635 0.6565 37 1 3.4921 -2.4075 1.2758 38 1 2.1851 -2.7700 -0.7137 39 1 3.6681 -2.0359 -1.3971 40 1 1.9971 -2.2045 -3.5226 41 1 3.4680 -1.2021 -3.5054 42 1 1.8230 -0.2763 -9.0874 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001122941706.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:02 Heat of formation + Delta-G solvation = -27.211757 kcal Electronic energy + Delta-G solvation = -25964.045924 eV Core-core repulsion = 21985.248714 eV Total energy + Delta-G solvation = -3978.797210 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.32352 -40.84795 -39.98266 -37.77859 -35.27240 -33.03417 -32.46187 -31.95828 -31.17016 -29.57971 -28.44725 -25.77704 -25.52011 -24.07111 -23.19679 -22.92048 -21.23276 -19.31425 -18.52235 -17.99951 -17.67844 -16.90092 -16.63658 -16.39774 -16.23849 -15.72077 -15.39062 -14.97548 -14.83237 -14.40601 -14.09850 -14.01506 -13.94099 -13.79067 -13.52126 -13.16669 -12.96556 -12.77453 -12.58714 -12.49607 -12.21935 -11.86999 -11.82401 -11.60601 -11.11057 -11.07318 -11.05831 -10.80061 -10.68937 -10.12680 -10.04861 -9.86295 -9.44890 -9.09127 -8.66217 -8.28412 -8.22671 -6.54418 -6.24764 -3.96000 0.66761 0.89274 2.27747 2.87205 2.97692 3.20962 3.22624 3.26673 3.29177 3.49880 3.58281 3.98012 4.16177 4.18657 4.20914 4.43099 4.52282 4.70442 4.76599 4.86387 4.88678 4.97419 5.10327 5.14805 5.24303 5.29923 5.39468 5.41595 5.41968 5.56581 5.57777 5.69301 5.76321 5.80674 5.85147 6.07159 6.08425 6.15219 6.35831 6.48968 6.98613 7.51096 7.54174 7.56381 8.31544 8.46803 9.20340 10.82549 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.032459 B = 0.001924 C = 0.001878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.422113 B =14550.794253 C =14902.739481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.134 3.866 3 H 0.080 0.920 4 C 0.145 3.855 5 H 0.105 0.895 6 N -0.707 5.707 7 C 0.445 3.555 8 C -0.251 4.251 9 C -0.006 4.006 10 C -0.258 4.258 11 C 0.357 3.643 12 F -0.114 7.114 13 N -0.578 5.578 14 C -0.149 4.149 15 C 0.101 3.899 16 N -0.622 5.622 17 C 0.551 3.449 18 O -0.510 6.510 19 C -0.147 4.147 20 S -0.059 6.059 21 C -0.536 4.536 22 H 0.072 0.928 23 C 0.074 3.926 24 N -0.867 5.867 25 Si 0.919 3.081 26 H -0.283 1.283 27 H -0.274 1.274 28 H -0.274 1.274 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.409 0.591 33 H 0.141 0.859 34 H 0.144 0.856 35 H 0.143 0.857 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.073 0.927 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.263 -6.029 28.007 28.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.030 3.970 3 H 0.098 0.902 4 C 0.038 3.962 5 H 0.123 0.877 6 N -0.338 5.338 7 C 0.208 3.792 8 C -0.276 4.276 9 C -0.031 4.031 10 C -0.282 4.282 11 C 0.203 3.797 12 F -0.093 7.093 13 N -0.302 5.302 14 C -0.188 4.188 15 C -0.023 4.023 16 N -0.361 5.361 17 C 0.340 3.660 18 O -0.384 6.384 19 C -0.298 4.298 20 S 0.167 5.833 21 C -0.684 4.684 22 H 0.090 0.910 23 C -0.136 4.136 24 N -0.502 5.502 25 Si 0.745 3.255 26 H -0.208 1.208 27 H -0.199 1.199 28 H -0.199 1.199 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.098 0.902 32 H 0.247 0.753 33 H 0.159 0.841 34 H 0.162 0.838 35 H 0.161 0.839 36 H 0.103 0.897 37 H 0.107 0.893 38 H 0.091 0.909 39 H 0.103 0.897 40 H 0.108 0.892 41 H 0.107 0.893 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.382 -3.707 27.024 27.280 hybrid contribution 1.357 -2.119 -0.113 2.519 sum 1.739 -5.826 26.912 27.590 Atomic orbital electron populations 1.22150 0.93876 1.02633 1.03459 1.21526 0.95204 0.96488 0.83823 0.90232 1.22144 0.96707 0.90836 0.86474 0.87695 1.44539 1.72139 1.15858 1.01308 1.17755 0.88586 0.88199 0.84649 1.21489 1.11540 0.96477 0.98046 1.21205 0.91418 0.99062 0.91433 1.21493 1.11364 0.93160 1.02209 1.17652 0.93506 0.85071 0.83511 1.91631 1.88175 1.67264 1.62199 1.66207 1.24978 1.38536 1.00454 1.23366 0.98383 1.01411 0.95662 1.22340 0.95968 0.89119 0.94828 1.48521 1.54204 1.28756 1.04586 1.20046 0.79757 0.85013 0.81214 1.90706 1.38254 1.26928 1.82471 1.23516 1.03683 1.02654 0.99903 1.85413 1.69371 1.37966 0.90517 1.22808 1.38273 1.14290 0.93078 0.90970 1.24995 0.95220 0.95991 0.97362 1.70009 1.38276 1.28123 1.13814 0.86219 0.79640 0.80507 0.79113 1.20795 1.19933 1.19920 0.92245 0.91858 0.90238 0.75346 0.84112 0.83778 0.83907 0.89683 0.89340 0.90904 0.89736 0.89226 0.89277 0.92093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.78 9.11 37.16 0.34 -1.44 16 2 C 0.13 1.42 3.20 -66.95 -0.21 1.21 16 3 H 0.08 0.92 7.72 -51.93 -0.40 0.52 16 4 C 0.14 1.06 2.54 -66.09 -0.17 0.89 16 5 H 0.11 0.63 6.06 -51.93 -0.31 0.31 16 6 N -0.71 -5.64 5.35 -52.16 -0.28 -5.91 16 7 C 0.44 3.94 7.65 -155.01 -1.19 2.76 16 8 C -0.25 -1.66 9.24 -39.22 -0.36 -2.02 16 9 C -0.01 -0.03 10.16 -39.34 -0.40 -0.43 16 10 C -0.26 -1.78 10.08 -39.34 -0.40 -2.18 16 11 C 0.36 3.48 8.41 -17.37 -0.15 3.34 16 12 F -0.11 -1.17 17.29 2.25 0.04 -1.13 16 13 N -0.58 -6.28 10.40 -12.78 -0.13 -6.41 16 14 C -0.15 -1.01 6.78 -24.46 -0.17 -1.18 16 15 C 0.10 0.90 6.70 -2.41 -0.02 0.89 16 16 N -0.62 -7.99 3.06 -162.88 -0.50 -8.49 16 17 C 0.55 9.96 7.66 -10.98 -0.08 9.88 16 18 O -0.51 -11.17 14.89 5.56 0.08 -11.09 16 19 C -0.15 -2.88 5.16 36.01 0.19 -2.69 16 20 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 21 C -0.54 -15.00 9.50 30.94 0.29 -14.71 16 22 H 0.07 1.90 7.80 -52.49 -0.41 1.49 16 23 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 24 N -0.87 -25.85 13.22 55.49 0.73 -25.12 16 25 Si 0.92 21.08 29.55 -169.99 -5.02 16.06 16 26 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 27 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 28 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.08 1.14 6.87 -51.93 -0.36 0.78 16 32 H 0.41 3.40 8.49 -40.82 -0.35 3.05 16 33 H 0.14 0.66 6.17 -52.49 -0.32 0.33 16 34 H 0.14 0.36 8.06 -52.49 -0.42 -0.06 16 35 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 36 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.08 0.76 7.48 -51.93 -0.39 0.38 16 40 H 0.09 1.62 8.14 -51.91 -0.42 1.19 16 41 H 0.09 1.62 7.85 -51.91 -0.41 1.21 16 42 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 369.06 15.07 5.56 5.56 Total: -1.00 -34.55 369.06 -9.61 -44.16 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -5.46 Total: -0.12 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: -2.42 Total: -3.71 kcal Atomic # 7 Polarization: -45.76 SS G_CDS: -0.18 Total: -45.94 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: 0.08 Total: -11.09 kcal Atomic # 9 Polarization: -1.17 SS G_CDS: 0.04 Total: -1.13 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.55 -9.61 -44.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122941706.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.946 kcal (2) G-P(sol) polarization free energy of solvation -34.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds