Wall clock time and date at job start Tue Mar 31 2020 23:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.87732 * 2 1 4 4 C 1.54321 * 110.01106 * 121.10079 * 2 1 3 5 5 H 1.08999 * 110.72166 * 23.14088 * 4 2 1 6 6 N 1.46504 * 110.72035 * 260.03981 * 4 2 1 7 7 C 1.39002 * 119.99645 * 154.99740 * 6 4 2 8 8 C 1.39068 * 119.68814 * 0.02562 * 7 6 4 9 9 C 1.38375 * 119.15311 * 179.97438 * 8 7 6 10 10 C 1.38763 * 118.53488 * 359.97438 * 9 8 7 11 11 C 1.38368 * 119.30771 * 359.97438 * 10 9 8 12 12 F 1.35101 * 119.60488 * 180.02562 * 11 10 9 13 13 N 1.32140 * 120.78814 * 359.75084 * 11 10 9 14 14 C 1.55157 * 102.94254 * 141.68283 * 4 2 1 15 15 C 1.55133 * 101.48424 * 324.32880 * 14 4 2 16 16 N 1.47029 * 109.88192 * 238.98563 * 2 1 3 17 17 C 1.34778 * 125.64469 * 61.45308 * 16 2 1 18 18 O 1.21278 * 120.00140 * 359.97438 * 17 16 2 19 19 C 1.50703 * 119.99723 * 180.02562 * 17 16 2 20 20 S 1.80993 * 109.47026 * 179.97438 * 19 17 16 21 21 C 1.76201 * 99.99993 * 179.97438 * 20 19 17 22 22 H 1.08002 * 120.00153 * 0.02562 * 21 20 19 23 23 C 1.38798 * 120.00523 * 179.97438 * 21 20 19 24 24 N 1.31634 * 119.99397 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00627 * 179.97438 * 23 21 20 26 26 H 1.48490 * 109.47339 * 180.02562 * 25 23 21 27 27 H 1.48493 * 109.47239 * 300.00544 * 25 23 21 28 28 H 1.48504 * 109.46636 * 60.00103 * 25 23 21 29 29 H 1.08990 * 109.47464 * 179.56022 * 1 2 3 30 30 H 1.09002 * 109.46935 * 299.56669 * 1 2 3 31 31 H 1.09004 * 109.46874 * 59.55336 * 1 2 3 32 32 H 0.96995 * 120.00382 * 335.00356 * 6 4 2 33 33 H 1.08000 * 120.42383 * 359.97438 * 8 7 6 34 34 H 1.07999 * 120.73576 * 179.97438 * 9 8 7 35 35 H 1.07998 * 120.34409 * 179.97438 * 10 9 8 36 36 H 1.08994 * 111.00771 * 82.57296 * 14 4 2 37 37 H 1.09007 * 111.00409 * 206.42526 * 14 4 2 38 38 H 1.08998 * 110.49767 * 278.45564 * 15 14 4 39 39 H 1.09005 * 110.34063 * 156.05944 * 15 14 4 40 40 H 1.09001 * 109.47144 * 59.99673 * 19 17 16 41 41 H 1.09006 * 109.47011 * 299.99863 * 19 17 16 42 42 H 0.97005 * 119.99723 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0250 0.0000 4 6 2.0581 -0.7490 1.2416 5 1 1.3092 -1.4450 1.6196 6 7 2.4581 0.1969 2.2864 7 6 2.4635 -0.2002 3.6184 8 6 2.0884 -1.4971 3.9520 9 6 2.0983 -1.8809 5.2814 10 6 2.4849 -0.9517 6.2367 11 6 2.8471 0.3219 5.8351 12 9 3.2250 1.2312 6.7601 13 7 2.8329 0.6578 4.5572 14 6 3.2918 -1.5108 0.6893 15 6 2.8129 -1.8794 -0.7395 16 7 2.0300 -0.7124 -1.1850 17 6 1.8049 -0.3601 -2.4663 18 8 1.1379 0.6212 -2.7172 19 6 2.3811 -1.1864 -3.5872 20 16 1.9054 -0.4625 -5.1764 21 6 2.6905 -1.5941 -6.2753 22 1 3.2539 -2.4269 -5.8811 23 6 2.5842 -1.4159 -7.6477 24 7 1.8971 -0.4011 -8.1282 25 14 3.4171 -2.6151 -8.8128 26 1 3.1540 -2.2060 -10.2158 27 1 4.8809 -2.6121 -8.5630 28 1 2.8790 -3.9805 -8.5856 29 1 -0.3634 -1.0275 -0.0079 30 1 -0.3633 0.5071 0.8939 31 1 -0.3633 0.5208 -0.8860 32 1 2.7192 1.1003 2.0486 33 1 1.7932 -2.1959 3.1832 34 1 1.8114 -2.8815 5.5692 35 1 2.5029 -1.2198 7.2827 36 1 4.1681 -0.8635 0.6565 37 1 3.4921 -2.4075 1.2758 38 1 2.1851 -2.7700 -0.7137 39 1 3.6681 -2.0359 -1.3971 40 1 1.9971 -2.2045 -3.5226 41 1 3.4680 -1.2021 -3.5054 42 1 1.8230 -0.2763 -9.0874 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001122941706.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:01 Heat of formation + Delta-G solvation = -50.178762 kcal Electronic energy + Delta-G solvation = -25965.041848 eV Core-core repulsion = 21985.248714 eV Total energy + Delta-G solvation = -3979.793134 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.00020 -41.60140 -40.86116 -38.89482 -36.05531 -34.58414 -33.62375 -32.90782 -32.02246 -30.47658 -29.53999 -27.65483 -26.50820 -24.67524 -23.86605 -23.78968 -21.94040 -20.51060 -19.57074 -19.13359 -18.63270 -18.02652 -17.45281 -17.07066 -16.93354 -16.87792 -16.54704 -16.41616 -16.13164 -15.71403 -15.14666 -15.02627 -14.66272 -14.55147 -14.45219 -14.07640 -14.04763 -13.88106 -13.69628 -13.27587 -13.16508 -13.09912 -12.86175 -12.80839 -12.69380 -12.59117 -12.32138 -11.83490 -11.73594 -11.23956 -11.12635 -10.91287 -10.71139 -10.63009 -10.27828 -9.74747 -8.79218 -8.67687 -8.34439 -6.13010 0.10776 0.39668 1.20983 1.42542 1.44270 1.53387 1.57196 1.74492 2.17311 2.27787 2.73724 2.94623 2.99704 3.17783 3.34064 3.52201 3.74377 3.86952 3.88835 3.92795 4.14433 4.19720 4.24814 4.26906 4.32402 4.35947 4.45774 4.54942 4.66850 4.76973 4.80794 4.92438 4.98395 5.02624 5.13318 5.20889 5.29468 5.39372 5.41568 5.56582 5.91649 6.19529 6.33552 6.39698 6.92555 7.06641 7.12329 8.74430 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.032459 B = 0.001924 C = 0.001878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.422113 B =14550.794253 C =14902.739481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.129 3.871 3 H 0.062 0.938 4 C 0.161 3.839 5 H 0.131 0.869 6 N -0.711 5.711 7 C 0.427 3.573 8 C -0.243 4.243 9 C 0.001 3.999 10 C -0.249 4.249 11 C 0.322 3.678 12 F -0.129 7.129 13 N -0.615 5.615 14 C -0.137 4.137 15 C 0.090 3.910 16 N -0.612 5.612 17 C 0.548 3.452 18 O -0.562 6.562 19 C -0.119 4.119 20 S -0.153 6.153 21 C -0.545 4.545 22 H 0.084 0.916 23 C 0.012 3.988 24 N -0.912 5.912 25 Si 0.999 3.001 26 H -0.280 1.280 27 H -0.262 1.262 28 H -0.260 1.260 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.038 0.962 32 H 0.404 0.596 33 H 0.169 0.831 34 H 0.184 0.816 35 H 0.164 0.836 36 H 0.075 0.925 37 H 0.123 0.877 38 H 0.099 0.901 39 H 0.086 0.914 40 H 0.110 0.890 41 H 0.106 0.894 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.122 -10.040 30.021 31.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.025 3.975 3 H 0.081 0.919 4 C 0.055 3.945 5 H 0.149 0.851 6 N -0.342 5.342 7 C 0.191 3.809 8 C -0.268 4.268 9 C -0.024 4.024 10 C -0.273 4.273 11 C 0.169 3.831 12 F -0.108 7.108 13 N -0.340 5.340 14 C -0.176 4.176 15 C -0.032 4.032 16 N -0.348 5.348 17 C 0.336 3.664 18 O -0.440 6.440 19 C -0.271 4.271 20 S 0.074 5.926 21 C -0.693 4.693 22 H 0.102 0.898 23 C -0.192 4.192 24 N -0.548 5.548 25 Si 0.820 3.180 26 H -0.206 1.206 27 H -0.187 1.187 28 H -0.185 1.185 29 H 0.092 0.908 30 H 0.098 0.902 31 H 0.057 0.943 32 H 0.239 0.761 33 H 0.186 0.814 34 H 0.202 0.798 35 H 0.182 0.818 36 H 0.093 0.907 37 H 0.141 0.859 38 H 0.117 0.883 39 H 0.104 0.896 40 H 0.128 0.872 41 H 0.124 0.876 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.265 -7.754 29.116 30.157 hybrid contribution 1.083 -0.874 -0.562 1.501 sum 2.348 -8.628 28.553 29.920 Atomic orbital electron populations 1.22071 0.94026 1.03115 1.02276 1.21682 0.95133 0.96212 0.84506 0.91946 1.22060 0.97453 0.90261 0.84724 0.85130 1.44534 1.72496 1.15760 1.01377 1.18026 0.89455 0.89091 0.84299 1.21845 1.10006 0.95594 0.99323 1.21701 0.89837 1.00290 0.90595 1.21823 1.09726 0.91972 1.03802 1.18052 0.95579 0.86165 0.83286 1.91586 1.88622 1.67992 1.62577 1.66056 1.26275 1.40270 1.01418 1.23355 0.97439 1.02451 0.94346 1.22749 0.96053 0.88288 0.96079 1.48400 1.53262 1.29701 1.03396 1.19754 0.79578 0.84328 0.82701 1.90691 1.40691 1.28997 1.83587 1.23307 1.04636 1.03014 0.96096 1.85618 1.70584 1.40406 0.95955 1.23158 1.38162 1.14359 0.93606 0.89779 1.26146 0.95767 0.97933 0.99392 1.70186 1.40031 1.30381 1.14205 0.85000 0.78758 0.78023 0.76208 1.20554 1.18666 1.18463 0.90793 0.90157 0.94327 0.76059 0.81408 0.79846 0.81830 0.90664 0.85912 0.88273 0.89606 0.87216 0.87616 0.92030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.32 9.11 71.98 0.66 -2.67 16 2 C 0.13 2.60 3.20 45.34 0.15 2.75 16 3 H 0.06 1.49 7.72 -2.39 -0.02 1.47 16 4 C 0.16 1.85 2.54 46.18 0.12 1.96 16 5 H 0.13 0.89 6.06 -2.39 -0.01 0.88 16 6 N -0.71 -10.10 5.35 -318.95 -1.71 -11.80 16 7 C 0.43 6.68 7.65 133.04 1.02 7.70 16 8 C -0.24 -2.18 9.24 22.50 0.21 -1.97 16 9 C 0.00 0.01 10.16 22.43 0.23 0.23 16 10 C -0.25 -2.78 10.08 22.43 0.23 -2.55 16 11 C 0.32 6.09 8.41 84.68 0.71 6.80 16 12 F -0.13 -2.72 17.29 44.97 0.78 -1.94 16 13 N -0.62 -13.10 10.40 -194.33 -2.02 -15.12 16 14 C -0.14 -1.32 6.78 32.06 0.22 -1.10 16 15 C 0.09 1.30 6.70 86.93 0.58 1.88 16 16 N -0.61 -14.94 3.06 -787.61 -2.41 -17.35 16 17 C 0.55 20.02 7.66 87.66 0.67 20.69 16 18 O -0.56 -25.88 14.89 -3.02 -0.05 -25.93 16 19 C -0.12 -4.64 5.16 71.24 0.37 -4.27 16 20 S -0.15 -8.42 20.57 -56.49 -1.16 -9.58 16 21 C -0.55 -30.69 9.50 67.95 0.65 -30.04 16 22 H 0.08 4.35 7.80 -2.91 -0.02 4.33 16 23 C 0.01 0.70 5.49 84.86 0.47 1.16 16 24 N -0.91 -55.78 13.22 21.65 0.29 -55.49 16 25 Si 1.00 42.96 29.55 68.60 2.03 44.99 16 26 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 27 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 28 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 29 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.04 1.15 6.87 -2.38 -0.02 1.13 16 32 H 0.40 6.63 8.49 -92.71 -0.79 5.84 16 33 H 0.17 0.53 6.17 -2.91 -0.02 0.51 16 34 H 0.18 -0.21 8.06 -2.91 -0.02 -0.24 16 35 H 0.16 1.04 8.06 -2.91 -0.02 1.01 16 36 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.12 0.46 8.14 -2.38 -0.02 0.44 16 38 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.09 1.27 7.48 -2.38 -0.02 1.25 16 40 H 0.11 3.79 8.14 -2.40 -0.02 3.77 16 41 H 0.11 3.73 7.85 -2.39 -0.02 3.71 16 42 H 0.27 15.42 8.31 -92.70 -0.77 14.65 16 Total: -1.00 -81.50 369.06 2.27 -79.22 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: 0.27 Total: 12.44 kcal Atomic # 6 Polarization: -5.70 SS G_CDS: 6.26 Total: 0.56 kcal Atomic # 7 Polarization: -93.91 SS G_CDS: -5.86 Total: -99.77 kcal Atomic # 8 Polarization: -25.88 SS G_CDS: -0.05 Total: -25.93 kcal Atomic # 9 Polarization: -2.72 SS G_CDS: 0.78 Total: -1.94 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Atomic # 16 Polarization: -8.42 SS G_CDS: -1.16 Total: -9.58 kcal Total: -81.50 2.27 -79.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122941706.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.045 kcal (2) G-P(sol) polarization free energy of solvation -81.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds