Wall clock time and date at job start Tue Mar 31 2020 23:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.99752 * 2 1 4 4 C 1.54321 * 109.88194 * 238.90655 * 2 1 3 5 5 C 1.55159 * 102.94193 * 218.38593 * 4 2 1 6 6 H 1.09001 * 111.00342 * 153.61748 * 5 4 2 7 7 N 1.46498 * 111.00420 * 277.42849 * 5 4 2 8 8 C 1.39001 * 119.99905 * 204.72202 * 7 5 4 9 9 C 1.39075 * 119.68643 * 0.02562 * 8 7 5 10 10 C 1.38376 * 119.15297 * 179.79490 * 9 8 7 11 11 C 1.38762 * 118.53453 * 0.46957 * 10 9 8 12 12 C 1.38369 * 119.30762 * 359.75617 * 11 10 9 13 13 F 1.35097 * 119.60551 * 179.97438 * 12 11 10 14 14 N 1.32146 * 120.78964 * 0.02562 * 12 11 10 15 15 C 1.54912 * 101.57940 * 35.50524 * 5 4 2 16 16 N 1.47020 * 109.88322 * 121.09692 * 2 1 3 17 17 C 1.34778 * 125.65053 * 298.40569 * 16 2 1 18 18 O 1.21283 * 119.99490 * 359.97438 * 17 16 2 19 19 C 1.50697 * 120.00087 * 180.02562 * 17 16 2 20 20 S 1.81002 * 109.46821 * 180.02562 * 19 17 16 21 21 C 1.76208 * 99.99823 * 179.97438 * 20 19 17 22 22 H 1.07996 * 119.99446 * 359.97438 * 21 20 19 23 23 C 1.38793 * 119.99678 * 179.97438 * 21 20 19 24 24 N 1.31628 * 120.00621 * 0.02562 * 23 21 20 25 25 Si 1.86808 * 119.99672 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.46676 * 90.00241 * 25 23 21 27 27 H 1.48492 * 109.47194 * 210.00170 * 25 23 21 28 28 H 1.48494 * 109.47056 * 330.00705 * 25 23 21 29 29 H 1.09003 * 109.46557 * 181.09294 * 1 2 3 30 30 H 1.08997 * 109.47007 * 301.09347 * 1 2 3 31 31 H 1.09000 * 109.46998 * 61.09607 * 1 2 3 32 32 H 1.09008 * 110.71989 * 100.02570 * 4 2 1 33 33 H 1.08996 * 110.72311 * 336.75408 * 4 2 1 34 34 H 0.97001 * 120.00384 * 25.00496 * 7 5 4 35 35 H 1.07996 * 120.42190 * 0.02562 * 9 8 7 36 36 H 1.07995 * 120.73202 * 180.22400 * 10 9 8 37 37 H 1.08004 * 120.34444 * 179.76963 * 11 10 9 38 38 H 1.08997 * 110.36849 * 81.82683 * 15 5 4 39 39 H 1.09001 * 110.36243 * 204.14906 * 15 5 4 40 40 H 1.09005 * 109.46838 * 299.99693 * 19 17 16 41 41 H 1.08999 * 109.47477 * 60.00154 * 19 17 16 42 42 H 0.97000 * 120.00130 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7495 -1.2427 5 6 3.2877 -1.5141 -0.6924 6 1 3.4857 -2.4105 -1.2801 7 7 4.4674 -0.6466 -0.6494 8 6 5.7407 -1.2024 -0.6937 9 6 5.8872 -2.5828 -0.7794 10 6 7.1598 -3.1240 -0.8271 11 6 8.2480 -2.2643 -0.7774 12 6 8.0304 -0.9008 -0.6875 13 9 9.0854 -0.0584 -0.6383 14 7 6.8030 -0.4128 -0.6482 15 6 2.8146 -1.8794 0.7367 16 7 2.0301 -0.7141 1.1839 17 6 1.8073 -0.3622 2.4657 18 8 1.1433 0.6208 2.7180 19 6 2.3842 -1.1896 3.5853 20 16 1.9116 -0.4659 5.1756 21 6 2.6958 -1.5998 6.2729 22 1 3.2571 -2.4333 5.8774 23 6 2.5921 -1.4216 7.6455 24 7 1.9075 -0.4059 8.1275 25 14 3.4229 -2.6242 8.8088 26 1 4.8014 -2.1565 9.1025 27 1 2.6479 -2.7057 10.0729 28 1 3.4799 -3.9662 8.1757 29 1 -0.3632 -1.0275 0.0196 30 1 -0.3633 0.5307 0.8800 31 1 -0.3633 0.4967 -0.8997 32 1 2.3529 -0.0458 -2.0201 33 1 1.3052 -1.4458 -1.6183 34 1 4.3601 0.3153 -0.5859 35 1 5.0187 -3.2238 -0.8120 36 1 7.3030 -4.1921 -0.8973 37 1 9.2542 -2.6555 -0.8089 38 1 2.1887 -2.7715 0.7127 39 1 3.6717 -2.0338 1.3921 40 1 1.9989 -2.2073 3.5208 41 1 3.4708 -1.2065 3.5020 42 1 1.8354 -0.2813 9.0868 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123156036.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:57 Heat of formation + Delta-G solvation = -28.095389 kcal Electronic energy + Delta-G solvation = -26516.606691 eV Core-core repulsion = 22537.771164 eV Total energy + Delta-G solvation = -3978.835527 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.18703 -40.77947 -39.89191 -37.72137 -35.10340 -32.90189 -32.43954 -32.25565 -30.79908 -28.95546 -28.63651 -26.14418 -25.49713 -24.03444 -23.53014 -22.42717 -21.01403 -19.04740 -18.56956 -17.92056 -17.68345 -16.85025 -16.54992 -16.26968 -16.21856 -15.67897 -15.22436 -14.83961 -14.80646 -14.55724 -14.12081 -13.93711 -13.77409 -13.60260 -13.38397 -13.12231 -12.90429 -12.75945 -12.61468 -12.38791 -12.13543 -11.94106 -11.74764 -11.44158 -11.07074 -11.03774 -10.96469 -10.77338 -10.70212 -9.98896 -9.98421 -9.82567 -9.38524 -9.07483 -8.61665 -8.25069 -8.09624 -6.51398 -6.22519 -3.93350 0.79236 1.01950 2.48861 2.84523 3.03324 3.21816 3.24635 3.29397 3.41398 3.57382 3.64260 4.00433 4.16114 4.19951 4.32731 4.51007 4.55005 4.81198 4.85897 4.89307 4.98694 5.01558 5.12727 5.21397 5.31230 5.38344 5.40997 5.42535 5.51979 5.52532 5.58658 5.61129 5.86017 5.87390 5.96980 6.10619 6.18160 6.22422 6.47133 6.58429 7.10081 7.58176 7.61129 7.63826 8.34153 8.53128 9.22791 10.84935 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.008865 B = 0.003303 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3157.633033 B = 8475.315403 C =10743.574464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.133 3.867 3 H 0.074 0.926 4 C -0.133 4.133 5 C 0.139 3.861 6 H 0.110 0.890 7 N -0.706 5.706 8 C 0.443 3.557 9 C -0.252 4.252 10 C -0.005 4.005 11 C -0.257 4.257 12 C 0.358 3.642 13 F -0.113 7.113 14 N -0.577 5.577 15 C 0.084 3.916 16 N -0.620 5.620 17 C 0.551 3.449 18 O -0.511 6.511 19 C -0.147 4.147 20 S -0.060 6.060 21 C -0.535 4.535 22 H 0.072 0.928 23 C 0.074 3.926 24 N -0.867 5.867 25 Si 0.918 3.082 26 H -0.277 1.277 27 H -0.282 1.282 28 H -0.272 1.272 29 H 0.056 0.944 30 H 0.074 0.926 31 H 0.061 0.939 32 H 0.090 0.910 33 H 0.097 0.903 34 H 0.409 0.591 35 H 0.141 0.859 36 H 0.144 0.856 37 H 0.143 0.857 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.088 0.912 41 H 0.086 0.914 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.205 -7.530 -24.822 26.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.030 3.970 3 H 0.092 0.908 4 C -0.172 4.172 5 C 0.032 3.968 6 H 0.127 0.873 7 N -0.337 5.337 8 C 0.207 3.793 9 C -0.277 4.277 10 C -0.031 4.031 11 C -0.282 4.282 12 C 0.204 3.796 13 F -0.092 7.092 14 N -0.300 5.300 15 C -0.042 4.042 16 N -0.358 5.358 17 C 0.339 3.661 18 O -0.385 6.385 19 C -0.297 4.297 20 S 0.167 5.833 21 C -0.684 4.684 22 H 0.090 0.910 23 C -0.135 4.135 24 N -0.503 5.503 25 Si 0.744 3.256 26 H -0.202 1.202 27 H -0.207 1.207 28 H -0.197 1.197 29 H 0.076 0.924 30 H 0.093 0.907 31 H 0.080 0.920 32 H 0.108 0.892 33 H 0.115 0.885 34 H 0.246 0.754 35 H 0.159 0.841 36 H 0.162 0.838 37 H 0.161 0.839 38 H 0.098 0.902 39 H 0.101 0.899 40 H 0.106 0.894 41 H 0.105 0.895 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.895 -5.151 -24.133 25.158 hybrid contribution 1.676 -2.159 0.555 2.789 sum 6.571 -7.310 -23.578 25.545 Atomic orbital electron populations 1.22136 0.94450 1.02413 1.03080 1.21504 0.95067 0.96366 0.84087 0.90766 1.23085 0.96364 1.00354 0.97354 1.22178 0.84311 0.94285 0.96034 0.87262 1.44489 1.00660 1.09833 1.78757 1.17785 0.84684 0.88136 0.88714 1.21464 0.99199 0.93775 1.13262 1.21192 0.90877 1.00224 0.90790 1.21495 1.01697 0.91671 1.13297 1.17658 0.81937 0.85315 0.94732 1.91630 1.52494 1.72187 1.92924 1.66208 0.97896 1.41566 1.24348 1.22850 0.96157 0.89673 0.95474 1.48543 1.53862 1.28514 1.04901 1.19993 0.79717 0.85009 0.81340 1.90700 1.38482 1.26834 1.82480 1.23508 1.03528 1.02587 1.00088 1.85391 1.69407 1.37947 0.90544 1.22848 1.38315 1.14084 0.93107 0.90995 1.24981 0.95190 0.95991 0.97326 1.70014 1.38398 1.28193 1.13656 0.86177 0.79242 0.80537 0.79612 1.20242 1.20706 1.19684 0.92449 0.90697 0.91980 0.89192 0.88487 0.75401 0.84129 0.83795 0.83905 0.90160 0.89857 0.89414 0.89543 0.92164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.75 9.09 37.16 0.34 -1.42 16 2 C 0.13 1.40 3.45 -66.95 -0.23 1.17 16 3 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 4 C -0.13 -0.82 6.08 -24.90 -0.15 -0.97 16 5 C 0.14 0.93 3.13 -65.78 -0.21 0.72 16 6 H 0.11 0.46 6.33 -51.93 -0.33 0.13 16 7 N -0.71 -6.32 5.36 -51.86 -0.28 -6.60 16 8 C 0.44 4.58 7.65 -155.01 -1.19 3.40 16 9 C -0.25 -1.98 9.25 -39.22 -0.36 -2.34 16 10 C -0.01 -0.04 10.16 -39.34 -0.40 -0.44 16 11 C -0.26 -2.23 10.08 -39.34 -0.40 -2.63 16 12 C 0.36 4.17 8.41 -17.37 -0.15 4.03 16 13 F -0.11 -1.39 17.29 2.25 0.04 -1.35 16 14 N -0.58 -7.35 10.40 -12.78 -0.13 -7.49 16 15 C 0.08 0.79 6.39 -2.53 -0.02 0.77 16 16 N -0.62 -8.20 3.07 -163.02 -0.50 -8.70 16 17 C 0.55 10.35 7.66 -10.99 -0.08 10.27 16 18 O -0.51 -11.53 14.91 5.56 0.08 -11.45 16 19 C -0.15 -3.01 5.16 36.00 0.19 -2.82 16 20 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 21 C -0.54 -15.34 9.50 30.94 0.29 -15.05 16 22 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 23 C 0.07 2.13 5.49 -17.43 -0.10 2.04 16 24 N -0.87 -26.28 13.22 55.49 0.73 -25.55 16 25 Si 0.92 21.49 29.55 -169.99 -5.02 16.47 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 27 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 28 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 1.08 6.90 -51.93 -0.36 0.73 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.09 0.47 8.14 -51.92 -0.42 0.05 16 33 H 0.10 0.45 7.85 -51.93 -0.41 0.04 16 34 H 0.41 4.02 8.79 -40.82 -0.36 3.66 16 35 H 0.14 0.74 6.16 -52.49 -0.32 0.42 16 36 H 0.14 0.57 8.06 -52.49 -0.42 0.15 16 37 H 0.14 0.92 8.06 -52.48 -0.42 0.50 16 38 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.08 0.89 7.48 -51.93 -0.39 0.51 16 40 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16 41 H 0.09 1.70 7.85 -51.92 -0.41 1.30 16 42 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 369.63 15.07 5.57 5.57 Total: -1.00 -35.96 369.63 -9.68 -45.64 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -5.50 Total: 0.56 kcal Atomic # 6 Polarization: -0.82 SS G_CDS: -2.46 Total: -3.27 kcal Atomic # 7 Polarization: -48.15 SS G_CDS: -0.18 Total: -48.33 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: 0.08 Total: -11.45 kcal Atomic # 9 Polarization: -1.39 SS G_CDS: 0.04 Total: -1.35 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.96 -9.68 -45.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123156036.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.543 kcal (2) G-P(sol) polarization free energy of solvation -35.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds