Wall clock time and date at job start Tue Mar 31 2020 23:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.99752 * 2 1 4 4 C 1.54321 * 109.88194 * 238.90655 * 2 1 3 5 5 C 1.55159 * 102.94193 * 218.38593 * 4 2 1 6 6 H 1.09001 * 111.00342 * 153.61748 * 5 4 2 7 7 N 1.46498 * 111.00420 * 277.42849 * 5 4 2 8 8 C 1.39001 * 119.99905 * 204.72202 * 7 5 4 9 9 C 1.39075 * 119.68643 * 0.02562 * 8 7 5 10 10 C 1.38376 * 119.15297 * 179.79490 * 9 8 7 11 11 C 1.38762 * 118.53453 * 0.46957 * 10 9 8 12 12 C 1.38369 * 119.30762 * 359.75617 * 11 10 9 13 13 F 1.35097 * 119.60551 * 179.97438 * 12 11 10 14 14 N 1.32146 * 120.78964 * 0.02562 * 12 11 10 15 15 C 1.54912 * 101.57940 * 35.50524 * 5 4 2 16 16 N 1.47020 * 109.88322 * 121.09692 * 2 1 3 17 17 C 1.34778 * 125.65053 * 298.40569 * 16 2 1 18 18 O 1.21283 * 119.99490 * 359.97438 * 17 16 2 19 19 C 1.50697 * 120.00087 * 180.02562 * 17 16 2 20 20 S 1.81002 * 109.46821 * 180.02562 * 19 17 16 21 21 C 1.76208 * 99.99823 * 179.97438 * 20 19 17 22 22 H 1.07996 * 119.99446 * 359.97438 * 21 20 19 23 23 C 1.38793 * 119.99678 * 179.97438 * 21 20 19 24 24 N 1.31628 * 120.00621 * 0.02562 * 23 21 20 25 25 Si 1.86808 * 119.99672 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.46676 * 90.00241 * 25 23 21 27 27 H 1.48492 * 109.47194 * 210.00170 * 25 23 21 28 28 H 1.48494 * 109.47056 * 330.00705 * 25 23 21 29 29 H 1.09003 * 109.46557 * 181.09294 * 1 2 3 30 30 H 1.08997 * 109.47007 * 301.09347 * 1 2 3 31 31 H 1.09000 * 109.46998 * 61.09607 * 1 2 3 32 32 H 1.09008 * 110.71989 * 100.02570 * 4 2 1 33 33 H 1.08996 * 110.72311 * 336.75408 * 4 2 1 34 34 H 0.97001 * 120.00384 * 25.00496 * 7 5 4 35 35 H 1.07996 * 120.42190 * 0.02562 * 9 8 7 36 36 H 1.07995 * 120.73202 * 180.22400 * 10 9 8 37 37 H 1.08004 * 120.34444 * 179.76963 * 11 10 9 38 38 H 1.08997 * 110.36849 * 81.82683 * 15 5 4 39 39 H 1.09001 * 110.36243 * 204.14906 * 15 5 4 40 40 H 1.09005 * 109.46838 * 299.99693 * 19 17 16 41 41 H 1.08999 * 109.47477 * 60.00154 * 19 17 16 42 42 H 0.97000 * 120.00130 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0549 -0.7495 -1.2427 5 6 3.2877 -1.5141 -0.6924 6 1 3.4857 -2.4105 -1.2801 7 7 4.4674 -0.6466 -0.6494 8 6 5.7407 -1.2024 -0.6937 9 6 5.8872 -2.5828 -0.7794 10 6 7.1598 -3.1240 -0.8271 11 6 8.2480 -2.2643 -0.7774 12 6 8.0304 -0.9008 -0.6875 13 9 9.0854 -0.0584 -0.6383 14 7 6.8030 -0.4128 -0.6482 15 6 2.8146 -1.8794 0.7367 16 7 2.0301 -0.7141 1.1839 17 6 1.8073 -0.3622 2.4657 18 8 1.1433 0.6208 2.7180 19 6 2.3842 -1.1896 3.5853 20 16 1.9116 -0.4659 5.1756 21 6 2.6958 -1.5998 6.2729 22 1 3.2571 -2.4333 5.8774 23 6 2.5921 -1.4216 7.6455 24 7 1.9075 -0.4059 8.1275 25 14 3.4229 -2.6242 8.8088 26 1 4.8014 -2.1565 9.1025 27 1 2.6479 -2.7057 10.0729 28 1 3.4799 -3.9662 8.1757 29 1 -0.3632 -1.0275 0.0196 30 1 -0.3633 0.5307 0.8800 31 1 -0.3633 0.4967 -0.8997 32 1 2.3529 -0.0458 -2.0201 33 1 1.3052 -1.4458 -1.6183 34 1 4.3601 0.3153 -0.5859 35 1 5.0187 -3.2238 -0.8120 36 1 7.3030 -4.1921 -0.8973 37 1 9.2542 -2.6555 -0.8089 38 1 2.1887 -2.7715 0.7127 39 1 3.6717 -2.0338 1.3921 40 1 1.9989 -2.2073 3.5208 41 1 3.4708 -1.2065 3.5020 42 1 1.8354 -0.2813 9.0868 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123156036.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:56 Heat of formation + Delta-G solvation = -52.835394 kcal Electronic energy + Delta-G solvation = -26517.679498 eV Core-core repulsion = 22537.771164 eV Total energy + Delta-G solvation = -3979.908334 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.01337 -41.59373 -40.82615 -38.88014 -35.91333 -34.61711 -33.57685 -33.35578 -31.54402 -30.28328 -29.46549 -27.69703 -26.91672 -24.76827 -24.20928 -23.40266 -21.71887 -20.38114 -19.53594 -19.19002 -18.68880 -18.08642 -17.40312 -17.08429 -16.96371 -16.90817 -16.54337 -16.43170 -16.12340 -15.65917 -15.20829 -15.09440 -14.67380 -14.55736 -14.35726 -14.06345 -14.05446 -13.81150 -13.58666 -13.37432 -13.19686 -13.06211 -12.91208 -12.86025 -12.60572 -12.43971 -12.20850 -11.75763 -11.73758 -11.34650 -11.17192 -10.89760 -10.70495 -10.66895 -10.32033 -9.70989 -8.76906 -8.71185 -8.37438 -6.16558 0.10469 0.39990 1.21792 1.40474 1.43012 1.54073 1.56890 1.86798 2.07576 2.24730 2.73938 2.94582 2.96797 3.19621 3.41726 3.47339 3.76882 3.87253 3.94264 3.94706 4.16251 4.18163 4.27685 4.28318 4.36416 4.39697 4.44139 4.61234 4.72589 4.79764 4.82189 4.87302 4.95368 5.01240 5.12929 5.27935 5.30716 5.38037 5.51504 5.57788 5.96094 6.16493 6.37283 6.39839 6.95007 7.03523 7.13810 8.71951 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.008865 B = 0.003303 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3157.633033 B = 8475.315403 C =10743.574464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.124 3.876 3 H 0.055 0.945 4 C -0.114 4.114 5 C 0.148 3.852 6 H 0.152 0.848 7 N -0.711 5.711 8 C 0.423 3.577 9 C -0.243 4.243 10 C -0.001 4.001 11 C -0.252 4.252 12 C 0.319 3.681 13 F -0.130 7.130 14 N -0.619 5.619 15 C 0.072 3.928 16 N -0.609 5.609 17 C 0.546 3.454 18 O -0.563 6.563 19 C -0.118 4.118 20 S -0.151 6.151 21 C -0.547 4.547 22 H 0.081 0.919 23 C 0.015 3.985 24 N -0.911 5.911 25 Si 0.999 3.001 26 H -0.269 1.269 27 H -0.276 1.276 28 H -0.255 1.255 29 H 0.068 0.932 30 H 0.027 0.973 31 H 0.089 0.911 32 H 0.106 0.894 33 H 0.128 0.872 34 H 0.400 0.600 35 H 0.175 0.825 36 H 0.185 0.815 37 H 0.163 0.837 38 H 0.111 0.889 39 H 0.071 0.929 40 H 0.107 0.893 41 H 0.094 0.906 42 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.908 -11.622 -27.197 30.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.022 3.978 3 H 0.073 0.927 4 C -0.152 4.152 5 C 0.042 3.958 6 H 0.169 0.831 7 N -0.342 5.342 8 C 0.187 3.813 9 C -0.267 4.267 10 C -0.026 4.026 11 C -0.276 4.276 12 C 0.166 3.834 13 F -0.109 7.109 14 N -0.344 5.344 15 C -0.052 4.052 16 N -0.344 5.344 17 C 0.334 3.666 18 O -0.441 6.441 19 C -0.269 4.269 20 S 0.076 5.924 21 C -0.695 4.695 22 H 0.099 0.901 23 C -0.190 4.190 24 N -0.548 5.548 25 Si 0.820 3.180 26 H -0.195 1.195 27 H -0.201 1.201 28 H -0.179 1.179 29 H 0.087 0.913 30 H 0.047 0.953 31 H 0.107 0.893 32 H 0.124 0.876 33 H 0.146 0.854 34 H 0.235 0.765 35 H 0.192 0.808 36 H 0.202 0.798 37 H 0.180 0.820 38 H 0.129 0.871 39 H 0.089 0.911 40 H 0.125 0.875 41 H 0.112 0.888 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.625 -9.283 -26.578 28.709 hybrid contribution 1.452 -0.889 1.153 2.057 sum 7.077 -10.172 -25.424 28.283 Atomic orbital electron populations 1.22083 0.94555 1.02706 1.02207 1.21782 0.95048 0.96164 0.84849 0.92686 1.23077 0.96469 1.00661 0.95002 1.22373 0.83555 0.95436 0.94441 0.83070 1.44681 1.01002 1.09706 1.78789 1.18178 0.84429 0.89245 0.89463 1.21882 1.00813 0.92792 1.11210 1.21715 0.89927 1.01900 0.89085 1.21823 1.03513 0.90432 1.11792 1.18092 0.81602 0.86458 0.97225 1.91576 1.53110 1.72887 1.93360 1.66078 0.98991 1.43516 1.25802 1.23286 0.95841 0.89101 0.96967 1.48457 1.52791 1.29476 1.03678 1.19678 0.79647 0.84343 0.82976 1.90681 1.40962 1.28862 1.83638 1.23282 1.03910 1.03066 0.96634 1.85576 1.70558 1.40410 0.95847 1.23176 1.38410 1.14171 0.93713 0.90061 1.26135 0.95651 0.97961 0.99271 1.70183 1.40007 1.30396 1.14188 0.84956 0.77951 0.78225 0.76875 1.19474 1.20075 1.17916 0.91317 0.95327 0.89253 0.87599 0.85369 0.76493 0.80798 0.79797 0.81956 0.87102 0.91080 0.87492 0.88781 0.91938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.22 9.09 71.98 0.65 -2.57 16 2 C 0.12 2.42 3.45 45.34 0.16 2.58 16 3 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 4 C -0.11 -0.92 6.08 31.78 0.19 -0.73 16 5 C 0.15 1.34 3.13 46.39 0.15 1.48 16 6 H 0.15 0.24 6.33 -2.39 -0.02 0.22 16 7 N -0.71 -11.22 5.36 -317.99 -1.70 -12.92 16 8 C 0.42 7.95 7.65 133.04 1.02 8.97 16 9 C -0.24 -2.82 9.25 22.50 0.21 -2.61 16 10 C 0.00 -0.01 10.16 22.43 0.23 0.22 16 11 C -0.25 -3.85 10.08 22.43 0.23 -3.63 16 12 C 0.32 7.47 8.41 84.68 0.71 8.18 16 13 F -0.13 -3.35 17.29 44.97 0.78 -2.58 16 14 N -0.62 -15.86 10.40 -194.33 -2.02 -17.88 16 15 C 0.07 1.10 6.39 86.86 0.55 1.66 16 16 N -0.61 -15.43 3.07 -788.05 -2.42 -17.85 16 17 C 0.55 20.99 7.66 87.66 0.67 21.66 16 18 O -0.56 -26.93 14.91 -3.04 -0.05 -26.98 16 19 C -0.12 -4.89 5.16 71.24 0.37 -4.52 16 20 S -0.15 -8.62 20.57 -56.49 -1.16 -9.78 16 21 C -0.55 -31.80 9.50 67.95 0.65 -31.15 16 22 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 23 C 0.01 0.84 5.49 84.86 0.47 1.31 16 24 N -0.91 -56.74 13.22 21.65 0.29 -56.46 16 25 Si 1.00 43.96 29.55 68.60 2.03 45.99 16 26 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 27 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 28 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 29 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.03 0.85 6.90 -2.39 -0.02 0.83 16 31 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.11 0.65 8.14 -2.38 -0.02 0.63 16 33 H 0.13 0.37 7.85 -2.39 -0.02 0.35 16 34 H 0.40 7.62 8.79 -92.71 -0.82 6.81 16 35 H 0.17 0.74 6.16 -2.91 -0.02 0.72 16 36 H 0.18 0.37 8.06 -2.91 -0.02 0.35 16 37 H 0.16 1.71 8.06 -2.91 -0.02 1.68 16 38 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.07 1.32 7.48 -2.39 -0.02 1.31 16 40 H 0.11 3.97 8.14 -2.39 -0.02 3.95 16 41 H 0.09 3.72 7.85 -2.40 -0.02 3.70 16 42 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 Total: -1.00 -86.69 369.63 2.23 -84.46 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: 0.24 Total: 13.15 kcal Atomic # 6 Polarization: -5.40 SS G_CDS: 6.25 Total: 0.85 kcal Atomic # 7 Polarization: -99.25 SS G_CDS: -5.86 Total: -105.11 kcal Atomic # 8 Polarization: -26.93 SS G_CDS: -0.05 Total: -26.98 kcal Atomic # 9 Polarization: -3.35 SS G_CDS: 0.78 Total: -2.58 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Atomic # 16 Polarization: -8.62 SS G_CDS: -1.16 Total: -9.78 kcal Total: -86.69 2.23 -84.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123156036.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.626 kcal (2) G-P(sol) polarization free energy of solvation -86.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds