Wall clock time and date at job start Tue Mar 31 2020 23:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.87280 * 2 1 4 4 C 1.54325 * 109.88413 * 238.98354 * 2 1 3 5 5 C 1.55154 * 102.94303 * 218.23776 * 4 2 1 6 6 H 1.09008 * 111.03635 * 277.41090 * 5 4 2 7 7 N 1.46496 * 111.00463 * 153.57766 * 5 4 2 8 8 C 1.38996 * 120.00133 * 161.35323 * 7 5 4 9 9 C 1.39067 * 119.68836 * 359.97438 * 8 7 5 10 10 C 1.38381 * 119.15825 * 179.97438 * 9 8 7 11 11 C 1.38757 * 118.53337 * 0.02562 * 10 9 8 12 12 C 1.38367 * 119.30582 * 359.97438 * 11 10 9 13 13 F 1.35095 * 119.60666 * 180.02562 * 12 11 10 14 14 N 1.32140 * 120.79057 * 359.74940 * 12 11 10 15 15 C 1.54908 * 101.58289 * 35.49976 * 5 4 2 16 16 N 1.47290 * 110.00093 * 121.06049 * 2 1 3 17 17 C 1.34774 * 125.79121 * 298.43214 * 16 2 1 18 18 O 1.21280 * 120.00501 * 0.02562 * 17 16 2 19 19 C 1.50698 * 119.99753 * 180.02562 * 17 16 2 20 20 S 1.81001 * 109.47236 * 179.97438 * 19 17 16 21 21 C 1.76201 * 100.00467 * 179.97438 * 20 19 17 22 22 H 1.08003 * 119.99270 * 359.97438 * 21 20 19 23 23 C 1.38791 * 120.00497 * 180.02562 * 21 20 19 24 24 N 1.31630 * 119.99650 * 0.02562 * 23 21 20 25 25 Si 1.86793 * 120.00385 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.46999 * 359.97438 * 25 23 21 27 27 H 1.48498 * 109.47234 * 119.99575 * 25 23 21 28 28 H 1.48499 * 109.47132 * 240.00113 * 25 23 21 29 29 H 1.08995 * 109.47174 * 181.01182 * 1 2 3 30 30 H 1.08995 * 109.47106 * 301.02210 * 1 2 3 31 31 H 1.09007 * 109.46933 * 61.01664 * 1 2 3 32 32 H 1.09002 * 110.72180 * 99.87013 * 4 2 1 33 33 H 1.08997 * 110.72163 * 336.60220 * 4 2 1 34 34 H 0.97000 * 120.00071 * 341.34892 * 7 5 4 35 35 H 1.08006 * 120.42300 * 359.96145 * 9 8 7 36 36 H 1.08006 * 120.73355 * 180.02562 * 10 9 8 37 37 H 1.08004 * 120.34830 * 180.02562 * 11 10 9 38 38 H 1.09002 * 110.36632 * 81.83114 * 15 5 4 39 39 H 1.08995 * 110.36781 * 204.04351 * 15 5 4 40 40 H 1.09001 * 109.47204 * 299.99785 * 19 17 16 41 41 H 1.09000 * 109.47543 * 59.99762 * 19 17 16 42 42 H 0.97007 * 120.00036 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0549 -0.7478 -1.2437 5 6 3.2900 -1.5101 -0.6954 6 1 4.1669 -0.8633 -0.6642 7 7 3.5571 -2.7144 -1.4855 8 6 4.8056 -3.3225 -1.4253 9 6 5.7965 -2.7818 -0.6131 10 6 7.0353 -3.3963 -0.5610 11 6 7.2430 -4.5351 -1.3260 12 6 6.2129 -5.0198 -2.1125 13 9 6.4082 -6.1284 -2.8594 14 7 5.0386 -4.4144 -2.1376 15 6 2.8195 -1.8770 0.7342 16 7 2.0338 -0.7141 1.1856 17 6 1.8143 -0.3646 2.4686 18 8 1.1489 0.6166 2.7246 19 6 2.3956 -1.1929 3.5852 20 16 1.9280 -0.4716 5.1781 21 6 2.7168 -1.6063 6.2713 22 1 3.2774 -2.4390 5.8727 23 6 2.6169 -1.4306 7.6444 24 7 1.9324 -0.4166 8.1300 25 14 3.4537 -2.6331 8.8033 26 1 4.1535 -3.6772 8.0124 27 1 4.4379 -1.9062 9.6448 28 1 2.4345 -3.2723 9.6738 29 1 -0.3633 -1.0275 0.0181 30 1 -0.3633 0.5296 0.8806 31 1 -0.3633 0.4980 -0.8990 32 1 2.3504 -0.0433 -2.0212 33 1 1.3062 -1.4456 -1.6187 34 1 2.8628 -3.0876 -2.0508 35 1 5.6019 -1.8934 -0.0306 36 1 7.8231 -2.9983 0.0615 37 1 8.1983 -5.0385 -1.3072 38 1 2.1955 -2.7704 0.7107 39 1 3.6778 -2.0317 1.3880 40 1 2.0116 -2.2110 3.5203 41 1 3.4821 -1.2083 3.4987 42 1 1.8628 -0.2936 9.0897 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123156037.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:00 Heat of formation + Delta-G solvation = -28.653938 kcal Electronic energy + Delta-G solvation = -26222.466310 eV Core-core repulsion = 22243.606562 eV Total energy + Delta-G solvation = -3978.859748 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.27139 -40.77014 -39.93778 -37.75017 -35.36453 -32.95352 -32.46111 -32.30232 -30.81585 -29.03108 -28.57587 -26.12166 -25.51745 -24.05334 -23.69150 -22.12539 -21.31400 -19.15922 -18.52482 -17.95238 -17.69955 -17.04456 -16.44867 -16.36385 -16.30590 -15.73454 -15.22166 -14.96661 -14.83370 -14.54026 -14.12784 -13.95372 -13.79365 -13.64984 -13.43446 -13.20261 -13.10277 -12.71134 -12.63579 -12.49843 -12.08460 -12.04583 -11.80564 -11.25362 -11.10871 -11.09107 -11.03228 -10.78539 -10.71974 -10.07724 -10.03850 -9.83801 -9.43362 -9.10376 -8.64804 -8.27269 -8.19754 -6.54067 -6.24916 -3.95815 0.73274 0.95761 2.31391 2.85103 2.99392 3.19468 3.23734 3.28958 3.35328 3.51592 3.61261 3.99422 4.16590 4.21226 4.29050 4.48016 4.50993 4.73669 4.82635 4.87762 4.89590 4.98213 5.10520 5.22767 5.27772 5.36234 5.40376 5.45428 5.49334 5.52485 5.58296 5.58745 5.83200 5.85703 5.94567 6.08013 6.12485 6.18656 6.40927 6.50701 7.00623 7.54385 7.55399 7.57440 8.32314 8.48128 9.20715 10.82545 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.009685 B = 0.002936 C = 0.002328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2890.377497 B = 9535.340367 C =12026.845772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.139 3.861 3 H 0.080 0.920 4 C -0.131 4.131 5 C 0.141 3.859 6 H 0.104 0.896 7 N -0.708 5.708 8 C 0.440 3.560 9 C -0.248 4.248 10 C -0.005 4.005 11 C -0.254 4.254 12 C 0.354 3.646 13 F -0.114 7.114 14 N -0.577 5.577 15 C 0.086 3.914 16 N -0.622 5.622 17 C 0.551 3.449 18 O -0.509 6.509 19 C -0.148 4.148 20 S -0.060 6.060 21 C -0.535 4.535 22 H 0.073 0.927 23 C 0.074 3.926 24 N -0.867 5.867 25 Si 0.918 3.082 26 H -0.272 1.272 27 H -0.279 1.279 28 H -0.280 1.280 29 H 0.056 0.944 30 H 0.075 0.925 31 H 0.063 0.937 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.409 0.591 35 H 0.142 0.858 36 H 0.146 0.854 37 H 0.144 0.856 38 H 0.073 0.927 39 H 0.083 0.917 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.414 -4.622 -23.199 24.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.035 3.965 3 H 0.098 0.902 4 C -0.169 4.169 5 C 0.034 3.966 6 H 0.121 0.879 7 N -0.340 5.340 8 C 0.204 3.796 9 C -0.272 4.272 10 C -0.030 4.030 11 C -0.278 4.278 12 C 0.200 3.800 13 F -0.093 7.093 14 N -0.301 5.301 15 C -0.039 4.039 16 N -0.360 5.360 17 C 0.340 3.660 18 O -0.383 6.383 19 C -0.299 4.299 20 S 0.167 5.833 21 C -0.683 4.683 22 H 0.091 0.909 23 C -0.136 4.136 24 N -0.502 5.502 25 Si 0.745 3.255 26 H -0.196 1.196 27 H -0.205 1.205 28 H -0.205 1.205 29 H 0.075 0.925 30 H 0.094 0.906 31 H 0.082 0.918 32 H 0.109 0.891 33 H 0.104 0.896 34 H 0.246 0.754 35 H 0.160 0.840 36 H 0.164 0.836 37 H 0.162 0.838 38 H 0.092 0.908 39 H 0.101 0.899 40 H 0.106 0.894 41 H 0.107 0.893 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.679 -3.247 -22.985 23.897 hybrid contribution 1.667 -2.158 0.564 2.785 sum 7.346 -5.405 -22.420 24.204 Atomic orbital electron populations 1.22144 0.94374 1.02459 1.03184 1.21500 0.95115 0.96454 0.83440 0.90199 1.23004 0.96515 0.99816 0.97614 1.22153 0.98911 0.85446 0.90089 0.87865 1.44403 1.11084 1.28967 1.49531 1.17768 0.86430 0.86812 0.88574 1.21541 0.94361 1.05214 1.06132 1.21250 0.96232 0.91837 0.93682 1.21519 1.00781 1.01770 1.03752 1.17634 0.89299 0.83586 0.89462 1.91625 1.94480 1.48849 1.74353 1.66181 1.23546 1.12101 1.28282 1.22737 0.96280 0.89796 0.95111 1.48573 1.53831 1.28657 1.04982 1.20011 0.79802 0.84976 0.81199 1.90704 1.38370 1.26947 1.82269 1.23528 1.03593 1.02634 1.00096 1.85397 1.69594 1.37803 0.90508 1.22889 1.38116 1.14187 0.93092 0.90900 1.24989 0.95236 0.95991 0.97346 1.70027 1.38503 1.28233 1.13481 0.86119 0.79059 0.80251 0.80096 1.19604 1.20521 1.20543 0.92522 0.90563 0.91848 0.89086 0.89565 0.75405 0.84022 0.83607 0.83834 0.90844 0.89882 0.89371 0.89338 0.92210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.75 9.11 37.16 0.34 -1.42 16 2 C 0.14 1.42 3.46 -66.80 -0.23 1.19 16 3 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 4 C -0.13 -0.84 6.10 -24.90 -0.15 -1.00 16 5 C 0.14 1.00 2.92 -65.79 -0.19 0.81 16 6 H 0.10 0.67 6.68 -51.92 -0.35 0.32 16 7 N -0.71 -5.28 5.40 -51.87 -0.28 -5.56 16 8 C 0.44 4.12 7.65 -155.02 -1.19 2.94 16 9 C -0.25 -2.01 9.24 -39.22 -0.36 -2.37 16 10 C 0.00 -0.03 10.16 -39.34 -0.40 -0.43 16 11 C -0.25 -2.06 10.08 -39.34 -0.40 -2.46 16 12 C 0.35 3.70 8.40 -17.37 -0.15 3.56 16 13 F -0.11 -1.23 17.29 2.25 0.04 -1.19 16 14 N -0.58 -6.45 10.40 -12.78 -0.13 -6.58 16 15 C 0.09 0.85 6.38 -2.53 -0.02 0.83 16 16 N -0.62 -8.05 3.08 -162.82 -0.50 -8.55 16 17 C 0.55 10.02 7.67 -10.99 -0.08 9.93 16 18 O -0.51 -11.13 14.94 5.56 0.08 -11.04 16 19 C -0.15 -2.93 5.16 36.00 0.19 -2.75 16 20 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 21 C -0.53 -15.02 9.50 30.94 0.29 -14.73 16 22 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 23 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 24 N -0.87 -25.87 13.22 55.49 0.73 -25.14 16 25 Si 0.92 21.18 29.55 -169.99 -5.02 16.16 16 26 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 27 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 28 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.08 1.08 6.93 -51.93 -0.36 0.72 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.09 0.49 7.71 -51.93 -0.40 0.09 16 34 H 0.41 2.77 8.64 -40.82 -0.35 2.41 16 35 H 0.14 0.96 6.28 -52.48 -0.33 0.63 16 36 H 0.15 0.68 8.06 -52.48 -0.42 0.26 16 37 H 0.14 0.85 8.06 -52.48 -0.42 0.43 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.08 0.82 7.45 -51.93 -0.39 0.44 16 40 H 0.09 1.66 8.14 -51.92 -0.42 1.23 16 41 H 0.09 1.61 7.85 -51.92 -0.41 1.20 16 42 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 369.72 15.07 5.57 5.57 Total: -1.00 -34.54 369.72 -9.68 -44.21 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -5.51 Total: -0.17 kcal Atomic # 6 Polarization: -1.47 SS G_CDS: -2.44 Total: -3.92 kcal Atomic # 7 Polarization: -45.64 SS G_CDS: -0.18 Total: -45.82 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: 0.08 Total: -11.04 kcal Atomic # 9 Polarization: -1.23 SS G_CDS: 0.04 Total: -1.19 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.54 -9.68 -44.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123156037.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.561 kcal (2) G-P(sol) polarization free energy of solvation -34.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds