Wall clock time and date at job start Tue Mar 31 2020 23:04:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.87280 * 2 1 4 4 C 1.54325 * 109.88413 * 238.98354 * 2 1 3 5 5 C 1.55154 * 102.94303 * 218.23776 * 4 2 1 6 6 H 1.09008 * 111.03635 * 277.41090 * 5 4 2 7 7 N 1.46496 * 111.00463 * 153.57766 * 5 4 2 8 8 C 1.38996 * 120.00133 * 161.35323 * 7 5 4 9 9 C 1.39067 * 119.68836 * 359.97438 * 8 7 5 10 10 C 1.38381 * 119.15825 * 179.97438 * 9 8 7 11 11 C 1.38757 * 118.53337 * 0.02562 * 10 9 8 12 12 C 1.38367 * 119.30582 * 359.97438 * 11 10 9 13 13 F 1.35095 * 119.60666 * 180.02562 * 12 11 10 14 14 N 1.32140 * 120.79057 * 359.74940 * 12 11 10 15 15 C 1.54908 * 101.58289 * 35.49976 * 5 4 2 16 16 N 1.47290 * 110.00093 * 121.06049 * 2 1 3 17 17 C 1.34774 * 125.79121 * 298.43214 * 16 2 1 18 18 O 1.21280 * 120.00501 * 0.02562 * 17 16 2 19 19 C 1.50698 * 119.99753 * 180.02562 * 17 16 2 20 20 S 1.81001 * 109.47236 * 179.97438 * 19 17 16 21 21 C 1.76201 * 100.00467 * 179.97438 * 20 19 17 22 22 H 1.08003 * 119.99270 * 359.97438 * 21 20 19 23 23 C 1.38791 * 120.00497 * 180.02562 * 21 20 19 24 24 N 1.31630 * 119.99650 * 0.02562 * 23 21 20 25 25 Si 1.86793 * 120.00385 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.46999 * 359.97438 * 25 23 21 27 27 H 1.48498 * 109.47234 * 119.99575 * 25 23 21 28 28 H 1.48499 * 109.47132 * 240.00113 * 25 23 21 29 29 H 1.08995 * 109.47174 * 181.01182 * 1 2 3 30 30 H 1.08995 * 109.47106 * 301.02210 * 1 2 3 31 31 H 1.09007 * 109.46933 * 61.01664 * 1 2 3 32 32 H 1.09002 * 110.72180 * 99.87013 * 4 2 1 33 33 H 1.08997 * 110.72163 * 336.60220 * 4 2 1 34 34 H 0.97000 * 120.00071 * 341.34892 * 7 5 4 35 35 H 1.08006 * 120.42300 * 359.96145 * 9 8 7 36 36 H 1.08006 * 120.73355 * 180.02562 * 10 9 8 37 37 H 1.08004 * 120.34830 * 180.02562 * 11 10 9 38 38 H 1.09002 * 110.36632 * 81.83114 * 15 5 4 39 39 H 1.08995 * 110.36781 * 204.04351 * 15 5 4 40 40 H 1.09001 * 109.47204 * 299.99785 * 19 17 16 41 41 H 1.09000 * 109.47543 * 59.99762 * 19 17 16 42 42 H 0.97007 * 120.00036 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0549 -0.7478 -1.2437 5 6 3.2900 -1.5101 -0.6954 6 1 4.1669 -0.8633 -0.6642 7 7 3.5571 -2.7144 -1.4855 8 6 4.8056 -3.3225 -1.4253 9 6 5.7965 -2.7818 -0.6131 10 6 7.0353 -3.3963 -0.5610 11 6 7.2430 -4.5351 -1.3260 12 6 6.2129 -5.0198 -2.1125 13 9 6.4082 -6.1284 -2.8594 14 7 5.0386 -4.4144 -2.1376 15 6 2.8195 -1.8770 0.7342 16 7 2.0338 -0.7141 1.1856 17 6 1.8143 -0.3646 2.4686 18 8 1.1489 0.6166 2.7246 19 6 2.3956 -1.1929 3.5852 20 16 1.9280 -0.4716 5.1781 21 6 2.7168 -1.6063 6.2713 22 1 3.2774 -2.4390 5.8727 23 6 2.6169 -1.4306 7.6444 24 7 1.9324 -0.4166 8.1300 25 14 3.4537 -2.6331 8.8033 26 1 4.1535 -3.6772 8.0124 27 1 4.4379 -1.9062 9.6448 28 1 2.4345 -3.2723 9.6738 29 1 -0.3633 -1.0275 0.0181 30 1 -0.3633 0.5296 0.8806 31 1 -0.3633 0.4980 -0.8990 32 1 2.3504 -0.0433 -2.0212 33 1 1.3062 -1.4456 -1.6187 34 1 2.8628 -3.0876 -2.0508 35 1 5.6019 -1.8934 -0.0306 36 1 7.8231 -2.9983 0.0615 37 1 8.1983 -5.0385 -1.3072 38 1 2.1955 -2.7704 0.7107 39 1 3.6778 -2.0317 1.3880 40 1 2.0116 -2.2110 3.5203 41 1 3.4821 -1.2083 3.4987 42 1 1.8628 -0.2936 9.0897 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123156037.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:59 Heat of formation + Delta-G solvation = -51.247113 kcal Electronic energy + Delta-G solvation = -26223.446023 eV Core-core repulsion = 22243.606562 eV Total energy + Delta-G solvation = -3979.839461 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.01251 -41.55770 -40.87049 -38.86980 -36.15087 -34.59388 -33.59762 -33.38817 -31.54709 -30.31644 -29.40728 -27.67239 -26.92606 -24.76941 -24.37528 -23.06750 -21.99760 -20.40961 -19.52274 -19.19150 -18.65839 -18.13228 -17.47675 -17.06863 -16.97936 -16.89075 -16.54562 -16.41263 -16.05336 -15.90614 -15.16067 -14.89272 -14.64125 -14.49960 -14.39993 -14.31023 -14.05724 -14.01510 -13.59920 -13.36614 -13.16451 -13.13683 -12.92121 -12.87884 -12.61282 -12.55326 -12.03007 -11.84910 -11.71954 -11.33780 -11.16515 -10.90548 -10.74715 -10.67414 -10.28590 -9.75126 -8.82325 -8.68067 -8.35622 -6.13767 0.07306 0.35705 1.22258 1.40929 1.43126 1.54935 1.56110 1.71804 2.14271 2.26406 2.70641 2.91082 2.98802 3.23272 3.36560 3.49010 3.73205 3.83042 3.89072 3.94189 4.08814 4.15583 4.22532 4.26175 4.31045 4.38976 4.43589 4.57680 4.69257 4.72329 4.77477 4.88055 4.91176 4.98581 5.11915 5.27121 5.27959 5.41235 5.45713 5.52521 5.90629 6.19148 6.34614 6.40266 6.91985 7.05987 7.12401 8.73805 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.009685 B = 0.002936 C = 0.002328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2890.377497 B = 9535.340367 C =12026.845772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.131 3.869 3 H 0.077 0.923 4 C -0.115 4.115 5 C 0.154 3.846 6 H 0.118 0.882 7 N -0.701 5.701 8 C 0.427 3.573 9 C -0.249 4.249 10 C -0.003 4.003 11 C -0.249 4.249 12 C 0.326 3.674 13 F -0.125 7.125 14 N -0.605 5.605 15 C 0.078 3.922 16 N -0.610 5.610 17 C 0.550 3.450 18 O -0.557 6.557 19 C -0.122 4.122 20 S -0.147 6.147 21 C -0.545 4.545 22 H 0.081 0.919 23 C 0.014 3.986 24 N -0.911 5.911 25 Si 0.998 3.002 26 H -0.257 1.257 27 H -0.272 1.272 28 H -0.275 1.275 29 H 0.057 0.943 30 H 0.034 0.966 31 H 0.092 0.908 32 H 0.118 0.882 33 H 0.100 0.900 34 H 0.413 0.587 35 H 0.157 0.843 36 H 0.176 0.824 37 H 0.164 0.836 38 H 0.075 0.925 39 H 0.085 0.915 40 H 0.099 0.901 41 H 0.108 0.892 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.307 -5.763 -24.653 26.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.028 3.972 3 H 0.095 0.905 4 C -0.153 4.153 5 C 0.047 3.953 6 H 0.135 0.865 7 N -0.333 5.333 8 C 0.191 3.809 9 C -0.274 4.274 10 C -0.029 4.029 11 C -0.273 4.273 12 C 0.173 3.827 13 F -0.104 7.104 14 N -0.329 5.329 15 C -0.047 4.047 16 N -0.346 5.346 17 C 0.338 3.662 18 O -0.435 6.435 19 C -0.274 4.274 20 S 0.080 5.920 21 C -0.692 4.692 22 H 0.099 0.901 23 C -0.190 4.190 24 N -0.547 5.547 25 Si 0.819 3.181 26 H -0.181 1.181 27 H -0.198 1.198 28 H -0.200 1.200 29 H 0.076 0.924 30 H 0.054 0.946 31 H 0.110 0.890 32 H 0.137 0.863 33 H 0.118 0.882 34 H 0.250 0.750 35 H 0.175 0.825 36 H 0.193 0.807 37 H 0.181 0.819 38 H 0.093 0.907 39 H 0.104 0.896 40 H 0.117 0.883 41 H 0.126 0.874 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.589 -4.422 -24.507 26.033 hybrid contribution 1.073 -1.808 0.887 2.282 sum 8.663 -6.230 -23.620 25.918 Atomic orbital electron populations 1.22102 0.94820 1.02231 1.02650 1.21783 0.94868 0.96840 0.83671 0.90464 1.22964 0.96231 1.00068 0.95998 1.22048 0.99697 0.85388 0.88126 0.86470 1.44336 1.10709 1.28908 1.49336 1.18000 0.87293 0.86723 0.88873 1.21809 0.94391 1.05528 1.05657 1.21651 0.96718 0.91167 0.93320 1.21793 1.00903 1.01856 1.02725 1.17977 0.90084 0.83992 0.90647 1.91590 1.94562 1.49447 1.74802 1.66098 1.24321 1.13108 1.29408 1.23012 0.95990 0.88557 0.97103 1.48432 1.52869 1.29306 1.03996 1.19659 0.79626 0.84294 0.82614 1.90690 1.40596 1.28873 1.83314 1.23332 1.04756 1.02649 0.96614 1.85560 1.70789 1.39982 0.95689 1.23206 1.38076 1.14273 0.93690 0.90056 1.26106 0.95769 0.97905 0.99267 1.70186 1.40126 1.30390 1.14015 0.84923 0.77929 0.77752 0.77466 1.18062 1.19752 1.20039 0.92415 0.94649 0.88951 0.86327 0.88185 0.74972 0.82550 0.80693 0.81873 0.90663 0.89641 0.88252 0.87413 0.91972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.27 9.11 71.98 0.66 -2.62 16 2 C 0.13 2.42 3.46 45.29 0.16 2.58 16 3 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 4 C -0.11 -1.04 6.10 31.78 0.19 -0.85 16 5 C 0.15 1.66 2.92 46.38 0.14 1.79 16 6 H 0.12 1.04 6.68 -2.38 -0.02 1.02 16 7 N -0.70 -8.45 5.40 -318.01 -1.72 -10.17 16 8 C 0.43 7.04 7.65 133.04 1.02 8.06 16 9 C -0.25 -3.29 9.24 22.50 0.21 -3.09 16 10 C 0.00 -0.04 10.16 22.43 0.23 0.19 16 11 C -0.25 -3.50 10.08 22.42 0.23 -3.27 16 12 C 0.33 6.49 8.40 84.68 0.71 7.20 16 13 F -0.12 -2.67 17.29 44.97 0.78 -1.89 16 14 N -0.60 -12.78 10.40 -194.35 -2.02 -14.80 16 15 C 0.08 1.33 6.38 86.85 0.55 1.89 16 16 N -0.61 -14.97 3.08 -787.42 -2.42 -17.40 16 17 C 0.55 20.07 7.67 87.66 0.67 20.74 16 18 O -0.56 -25.27 14.94 -3.03 -0.05 -25.31 16 19 C -0.12 -4.84 5.16 71.24 0.37 -4.47 16 20 S -0.15 -8.12 20.57 -56.49 -1.16 -9.28 16 21 C -0.54 -30.83 9.50 67.95 0.65 -30.19 16 22 H 0.08 4.29 7.80 -2.91 -0.02 4.27 16 23 C 0.01 0.81 5.49 84.86 0.47 1.28 16 24 N -0.91 -55.53 13.22 21.65 0.29 -55.24 16 25 Si 1.00 43.20 29.55 68.60 2.03 45.23 16 26 H -0.26 -10.39 7.11 99.48 0.71 -9.69 16 27 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 28 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 29 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.03 1.02 6.93 -2.39 -0.02 1.01 16 31 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 32 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.10 0.72 7.71 -2.39 -0.02 0.70 16 34 H 0.41 4.47 8.64 -92.71 -0.80 3.67 16 35 H 0.16 1.54 6.28 -2.91 -0.02 1.52 16 36 H 0.18 0.92 8.06 -2.91 -0.02 0.89 16 37 H 0.16 1.53 8.06 -2.91 -0.02 1.51 16 38 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.09 1.46 7.45 -2.39 -0.02 1.44 16 40 H 0.10 3.68 8.14 -2.39 -0.02 3.66 16 41 H 0.11 3.81 7.85 -2.40 -0.02 3.79 16 42 H 0.27 15.30 8.31 -92.70 -0.77 14.53 16 Total: -1.00 -79.33 369.72 2.22 -77.11 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: 0.26 Total: 12.51 kcal Atomic # 6 Polarization: -6.99 SS G_CDS: 6.24 Total: -0.75 kcal Atomic # 7 Polarization: -91.73 SS G_CDS: -5.88 Total: -97.61 kcal Atomic # 8 Polarization: -25.27 SS G_CDS: -0.05 Total: -25.31 kcal Atomic # 9 Polarization: -2.67 SS G_CDS: 0.78 Total: -1.89 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Atomic # 16 Polarization: -8.12 SS G_CDS: -1.16 Total: -9.28 kcal Total: -79.33 2.22 -77.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123156037.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.867 kcal (2) G-P(sol) polarization free energy of solvation -79.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds