Wall clock time and date at job start Tue Mar 31 2020 23:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09003 * 109.88246 * 2 1 4 4 C 1.54326 * 109.88159 * 121.17943 * 2 1 3 5 5 C 1.55156 * 102.94359 * 141.60810 * 4 2 1 6 6 H 1.08999 * 111.00655 * 206.38242 * 5 4 2 7 7 N 1.46508 * 111.00693 * 82.57106 * 5 4 2 8 8 C 1.38993 * 119.99807 * 154.99733 * 7 5 4 9 9 C 1.39065 * 119.69126 * 0.02562 * 8 7 5 10 10 C 1.38382 * 119.15508 * 179.97438 * 9 8 7 11 11 C 1.38760 * 118.53517 * 0.02562 * 10 9 8 12 12 C 1.38372 * 119.30440 * 359.97438 * 11 10 9 13 13 F 1.35105 * 119.60190 * 179.97438 * 12 11 10 14 14 N 1.32138 * 120.79514 * 359.74875 * 12 11 10 15 15 C 1.55130 * 101.48672 * 324.33373 * 5 4 2 16 16 N 1.47020 * 109.88391 * 238.98296 * 2 1 3 17 17 C 1.34778 * 125.64655 * 61.61107 * 16 2 1 18 18 O 1.21282 * 120.00178 * 359.97438 * 17 16 2 19 19 C 1.50703 * 120.00172 * 180.02562 * 17 16 2 20 20 S 1.81000 * 109.47042 * 179.97438 * 19 17 16 21 21 C 1.76199 * 99.99871 * 179.97438 * 20 19 17 22 22 H 1.07999 * 119.99976 * 0.02562 * 21 20 19 23 23 C 1.38803 * 119.99949 * 179.97438 * 21 20 19 24 24 N 1.31634 * 119.99752 * 179.97438 * 23 21 20 25 25 Si 1.86796 * 119.99976 * 0.28020 * 23 21 20 26 26 H 1.48501 * 109.46922 * 269.71945 * 25 23 21 27 27 H 1.48496 * 109.47354 * 29.72142 * 25 23 21 28 28 H 1.48501 * 109.47428 * 149.72250 * 25 23 21 29 29 H 1.08993 * 109.47578 * 179.55820 * 1 2 3 30 30 H 1.09001 * 109.47025 * 299.56374 * 1 2 3 31 31 H 1.08999 * 109.46968 * 59.55840 * 1 2 3 32 32 H 1.08997 * 110.72152 * 259.97025 * 4 2 1 33 33 H 1.08997 * 110.72305 * 23.06773 * 4 2 1 34 34 H 0.96998 * 119.99512 * 335.00846 * 7 5 4 35 35 H 1.07998 * 120.42269 * 359.97438 * 9 8 7 36 36 H 1.07997 * 120.73473 * 180.02562 * 10 9 8 37 37 H 1.07998 * 120.34616 * 180.02562 * 11 10 9 38 38 H 1.09004 * 110.49601 * 278.45515 * 15 5 4 39 39 H 1.08999 * 110.34225 * 156.06215 * 15 5 4 40 40 H 1.09005 * 109.47194 * 59.99652 * 19 17 16 41 41 H 1.09000 * 109.46904 * 299.99694 * 19 17 16 42 42 H 0.97005 * 119.99723 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0547 -0.7514 1.2416 5 6 3.2875 -1.5153 0.6902 6 1 3.4855 -2.4126 1.2766 7 7 4.4674 -0.6479 0.6484 8 6 5.7405 -1.2035 0.6977 9 6 5.8868 -2.5836 0.7862 10 6 7.1594 -3.1250 0.8341 11 6 8.2476 -2.2650 0.7923 12 6 8.0301 -0.9013 0.7041 13 9 9.0852 -0.0584 0.6635 14 7 6.8029 -0.4138 0.6546 15 6 2.8098 -1.8815 -0.7395 16 7 2.0299 -0.7124 -1.1849 17 6 1.8074 -0.3585 -2.4662 18 8 1.1429 0.6245 -2.7172 19 6 2.3833 -1.1850 -3.5871 20 16 1.9113 -0.4585 -5.1763 21 6 2.6954 -1.5909 -6.2752 22 1 3.2564 -2.4253 -5.8810 23 6 2.5912 -1.4111 -7.6476 24 7 3.1775 -2.2567 -8.4685 25 14 1.6263 0.0357 -8.3294 26 1 0.2104 -0.3644 -8.5306 27 1 1.6892 1.1684 -7.3712 28 1 2.2120 0.4534 -9.6286 29 1 -0.3634 -1.0275 -0.0079 30 1 -0.3633 0.5070 0.8939 31 1 -0.3633 0.5207 -0.8860 32 1 2.3529 -0.0490 2.0200 33 1 1.3039 -1.4460 1.6180 34 1 4.3600 0.3142 0.5865 35 1 5.0183 -3.2247 0.8171 36 1 7.3026 -4.1932 0.9024 37 1 9.2537 -2.6559 0.8274 38 1 2.1799 -2.7708 -0.7154 39 1 3.6654 -2.0393 -1.3961 40 1 1.9970 -2.2024 -3.5240 41 1 3.4699 -1.2031 -3.5039 42 1 3.1050 -2.1309 -9.4277 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123156038.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:04 Heat of formation + Delta-G solvation = -27.841398 kcal Electronic energy + Delta-G solvation = -26547.141224 eV Core-core repulsion = 22568.316711 eV Total energy + Delta-G solvation = -3978.824513 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.18597 -40.80864 -39.94577 -37.80944 -35.14590 -32.90681 -32.45662 -32.33948 -30.83140 -29.03385 -28.71992 -26.19361 -25.62648 -24.05660 -23.54304 -22.50385 -21.06381 -19.13538 -18.58475 -17.93347 -17.69340 -16.93666 -16.57486 -16.28179 -16.24451 -15.69717 -15.31852 -15.03656 -14.82064 -14.58105 -14.18555 -13.94366 -13.77440 -13.59065 -13.39261 -13.17972 -13.01227 -12.80715 -12.75086 -12.48179 -12.20931 -12.02746 -11.81426 -11.50580 -11.27392 -11.03790 -11.00856 -10.72317 -10.61447 -9.99854 -9.98849 -9.86801 -9.50670 -9.01457 -8.70050 -8.51714 -8.11257 -6.93593 -6.30098 -4.02021 0.79004 1.01756 2.47018 2.63605 2.90715 3.14796 3.31902 3.40876 3.49774 3.57179 3.63538 3.96241 4.10974 4.32075 4.32687 4.47949 4.53420 4.67389 4.79563 4.84552 4.87527 4.95616 5.09003 5.09196 5.22272 5.26598 5.35700 5.39312 5.41432 5.46791 5.52365 5.54324 5.74101 5.87274 5.90017 5.97686 6.13114 6.19238 6.38417 6.57136 7.08328 7.50448 7.62694 7.92927 8.39735 8.40367 9.16086 10.79162 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.009927 B = 0.003214 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2819.976000 B = 8709.348731 C =10636.144259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.134 3.866 3 H 0.075 0.925 4 C -0.133 4.133 5 C 0.139 3.861 6 H 0.110 0.890 7 N -0.707 5.707 8 C 0.443 3.557 9 C -0.252 4.252 10 C -0.005 4.005 11 C -0.256 4.256 12 C 0.357 3.643 13 F -0.113 7.113 14 N -0.577 5.577 15 C 0.082 3.918 16 N -0.619 5.619 17 C 0.549 3.451 18 O -0.514 6.514 19 C -0.118 4.118 20 S -0.141 6.141 21 C -0.521 4.521 22 H 0.088 0.912 23 C 0.097 3.903 24 N -0.880 5.880 25 Si 0.856 3.144 26 H -0.267 1.267 27 H -0.235 1.235 28 H -0.274 1.274 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.097 0.903 34 H 0.409 0.591 35 H 0.141 0.859 36 H 0.145 0.855 37 H 0.143 0.857 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.095 0.905 41 H 0.094 0.906 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.448 -3.374 26.134 26.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.030 3.970 3 H 0.093 0.907 4 C -0.172 4.172 5 C 0.032 3.968 6 H 0.128 0.872 7 N -0.338 5.338 8 C 0.206 3.794 9 C -0.277 4.277 10 C -0.030 4.030 11 C -0.280 4.280 12 C 0.203 3.797 13 F -0.092 7.092 14 N -0.300 5.300 15 C -0.043 4.043 16 N -0.356 5.356 17 C 0.338 3.662 18 O -0.388 6.388 19 C -0.268 4.268 20 S 0.085 5.915 21 C -0.669 4.669 22 H 0.106 0.894 23 C -0.112 4.112 24 N -0.517 5.517 25 Si 0.681 3.319 26 H -0.192 1.192 27 H -0.159 1.159 28 H -0.199 1.199 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.108 0.892 33 H 0.116 0.884 34 H 0.246 0.754 35 H 0.159 0.841 36 H 0.163 0.837 37 H 0.161 0.839 38 H 0.100 0.900 39 H 0.103 0.897 40 H 0.113 0.887 41 H 0.112 0.888 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.264 -1.149 25.415 25.541 hybrid contribution 0.830 -0.996 -0.354 1.344 sum 3.094 -2.145 25.061 25.343 Atomic orbital electron populations 1.22139 0.94442 1.02419 1.03117 1.21514 0.95063 0.96384 0.84024 0.90708 1.23080 0.96427 1.00382 0.97276 1.22193 0.84293 0.94324 0.95948 0.87195 1.44461 1.00666 1.09779 1.78892 1.17778 0.84663 0.88148 0.88786 1.21464 0.99221 0.93758 1.13212 1.21203 0.90865 1.00264 0.90710 1.21504 1.01732 0.91651 1.13161 1.17659 0.81928 0.85322 0.94754 1.91633 1.52489 1.72154 1.92956 1.66206 0.97905 1.41574 1.24333 1.22933 0.96242 0.89487 0.95640 1.48495 1.53910 1.28390 1.04829 1.19953 0.79768 0.85001 0.81486 1.90697 1.38593 1.26897 1.82587 1.23258 1.03974 1.02381 0.97207 1.84780 1.71106 1.40030 0.95557 1.22299 1.38128 1.13623 0.92832 0.89441 1.24702 0.94521 0.96204 0.95785 1.69940 1.42194 1.36003 1.03517 0.86744 0.80781 0.84176 0.80218 1.19195 1.15919 1.19890 0.92405 0.91920 0.90760 0.89173 0.88437 0.75436 0.84114 0.83746 0.83867 0.89959 0.89724 0.88685 0.88778 0.91925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.65 9.10 37.15 0.34 -1.31 16 2 C 0.13 1.32 3.45 -66.96 -0.23 1.09 16 3 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 4 C -0.13 -0.76 6.07 -24.90 -0.15 -0.91 16 5 C 0.14 0.88 3.14 -65.66 -0.21 0.68 16 6 H 0.11 0.43 6.32 -51.93 -0.33 0.11 16 7 N -0.71 -6.12 5.37 -51.74 -0.28 -6.39 16 8 C 0.44 4.51 7.65 -155.01 -1.19 3.32 16 9 C -0.25 -1.96 9.25 -39.22 -0.36 -2.32 16 10 C 0.00 -0.04 10.16 -39.34 -0.40 -0.44 16 11 C -0.26 -2.23 10.08 -39.34 -0.40 -2.62 16 12 C 0.36 4.16 8.41 -17.37 -0.15 4.01 16 13 F -0.11 -1.38 17.29 2.25 0.04 -1.34 16 14 N -0.58 -7.29 10.40 -12.78 -0.13 -7.42 16 15 C 0.08 0.73 6.41 -2.41 -0.02 0.72 16 16 N -0.62 -7.74 3.06 -162.88 -0.50 -8.24 16 17 C 0.55 9.79 7.66 -10.98 -0.08 9.71 16 18 O -0.51 -10.96 14.90 5.56 0.08 -10.88 16 19 C -0.12 -2.31 5.16 36.01 0.19 -2.13 16 20 S -0.14 -3.61 18.54 -107.50 -1.99 -5.60 16 21 C -0.52 -15.10 10.04 30.94 0.31 -14.79 16 22 H 0.09 2.64 8.03 -52.49 -0.42 2.22 16 23 C 0.10 2.84 5.50 -17.43 -0.10 2.74 16 24 N -0.88 -26.64 13.97 55.49 0.78 -25.86 16 25 Si 0.86 21.91 27.74 -169.99 -4.72 17.20 16 26 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 27 H -0.24 -6.03 6.73 56.52 0.38 -5.65 16 28 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 1.02 6.88 -51.93 -0.36 0.66 16 32 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.10 0.41 7.85 -51.93 -0.41 0.00 16 34 H 0.41 3.87 8.79 -40.82 -0.36 3.51 16 35 H 0.14 0.73 6.16 -52.49 -0.32 0.41 16 36 H 0.14 0.58 8.06 -52.49 -0.42 0.16 16 37 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 38 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.08 0.87 7.48 -51.93 -0.39 0.49 16 40 H 0.09 1.74 8.14 -51.91 -0.42 1.31 16 41 H 0.09 1.79 7.85 -51.92 -0.41 1.39 16 42 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 366.92 15.07 5.53 5.53 Total: -1.00 -35.62 366.92 -9.16 -44.78 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -5.53 Total: 0.49 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: -2.44 Total: -2.26 kcal Atomic # 7 Polarization: -47.78 SS G_CDS: -0.13 Total: -47.92 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: 0.08 Total: -10.88 kcal Atomic # 9 Polarization: -1.38 SS G_CDS: 0.04 Total: -1.34 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.72 Total: 17.20 kcal Atomic # 16 Polarization: -3.61 SS G_CDS: -1.99 Total: -5.60 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.62 -9.16 -44.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123156038.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.939 kcal (2) G-P(sol) polarization free energy of solvation -35.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds