Wall clock time and date at job start Tue Mar 31 2020 23:05:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09003 * 109.88246 * 2 1 4 4 C 1.54326 * 109.88159 * 121.17943 * 2 1 3 5 5 C 1.55156 * 102.94359 * 141.60810 * 4 2 1 6 6 H 1.08999 * 111.00655 * 206.38242 * 5 4 2 7 7 N 1.46508 * 111.00693 * 82.57106 * 5 4 2 8 8 C 1.38993 * 119.99807 * 154.99733 * 7 5 4 9 9 C 1.39065 * 119.69126 * 0.02562 * 8 7 5 10 10 C 1.38382 * 119.15508 * 179.97438 * 9 8 7 11 11 C 1.38760 * 118.53517 * 0.02562 * 10 9 8 12 12 C 1.38372 * 119.30440 * 359.97438 * 11 10 9 13 13 F 1.35105 * 119.60190 * 179.97438 * 12 11 10 14 14 N 1.32138 * 120.79514 * 359.74875 * 12 11 10 15 15 C 1.55130 * 101.48672 * 324.33373 * 5 4 2 16 16 N 1.47020 * 109.88391 * 238.98296 * 2 1 3 17 17 C 1.34778 * 125.64655 * 61.61107 * 16 2 1 18 18 O 1.21282 * 120.00178 * 359.97438 * 17 16 2 19 19 C 1.50703 * 120.00172 * 180.02562 * 17 16 2 20 20 S 1.81000 * 109.47042 * 179.97438 * 19 17 16 21 21 C 1.76199 * 99.99871 * 179.97438 * 20 19 17 22 22 H 1.07999 * 119.99976 * 0.02562 * 21 20 19 23 23 C 1.38803 * 119.99949 * 179.97438 * 21 20 19 24 24 N 1.31634 * 119.99752 * 179.97438 * 23 21 20 25 25 Si 1.86796 * 119.99976 * 0.28020 * 23 21 20 26 26 H 1.48501 * 109.46922 * 269.71945 * 25 23 21 27 27 H 1.48496 * 109.47354 * 29.72142 * 25 23 21 28 28 H 1.48501 * 109.47428 * 149.72250 * 25 23 21 29 29 H 1.08993 * 109.47578 * 179.55820 * 1 2 3 30 30 H 1.09001 * 109.47025 * 299.56374 * 1 2 3 31 31 H 1.08999 * 109.46968 * 59.55840 * 1 2 3 32 32 H 1.08997 * 110.72152 * 259.97025 * 4 2 1 33 33 H 1.08997 * 110.72305 * 23.06773 * 4 2 1 34 34 H 0.96998 * 119.99512 * 335.00846 * 7 5 4 35 35 H 1.07998 * 120.42269 * 359.97438 * 9 8 7 36 36 H 1.07997 * 120.73473 * 180.02562 * 10 9 8 37 37 H 1.07998 * 120.34616 * 180.02562 * 11 10 9 38 38 H 1.09004 * 110.49601 * 278.45515 * 15 5 4 39 39 H 1.08999 * 110.34225 * 156.06215 * 15 5 4 40 40 H 1.09005 * 109.47194 * 59.99652 * 19 17 16 41 41 H 1.09000 * 109.46904 * 299.99694 * 19 17 16 42 42 H 0.97005 * 119.99723 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0547 -0.7514 1.2416 5 6 3.2875 -1.5153 0.6902 6 1 3.4855 -2.4126 1.2766 7 7 4.4674 -0.6479 0.6484 8 6 5.7405 -1.2035 0.6977 9 6 5.8868 -2.5836 0.7862 10 6 7.1594 -3.1250 0.8341 11 6 8.2476 -2.2650 0.7923 12 6 8.0301 -0.9013 0.7041 13 9 9.0852 -0.0584 0.6635 14 7 6.8029 -0.4138 0.6546 15 6 2.8098 -1.8815 -0.7395 16 7 2.0299 -0.7124 -1.1849 17 6 1.8074 -0.3585 -2.4662 18 8 1.1429 0.6245 -2.7172 19 6 2.3833 -1.1850 -3.5871 20 16 1.9113 -0.4585 -5.1763 21 6 2.6954 -1.5909 -6.2752 22 1 3.2564 -2.4253 -5.8810 23 6 2.5912 -1.4111 -7.6476 24 7 3.1775 -2.2567 -8.4685 25 14 1.6263 0.0357 -8.3294 26 1 0.2104 -0.3644 -8.5306 27 1 1.6892 1.1684 -7.3712 28 1 2.2120 0.4534 -9.6286 29 1 -0.3634 -1.0275 -0.0079 30 1 -0.3633 0.5070 0.8939 31 1 -0.3633 0.5207 -0.8860 32 1 2.3529 -0.0490 2.0200 33 1 1.3039 -1.4460 1.6180 34 1 4.3600 0.3142 0.5865 35 1 5.0183 -3.2247 0.8171 36 1 7.3026 -4.1932 0.9024 37 1 9.2537 -2.6559 0.8274 38 1 2.1799 -2.7708 -0.7154 39 1 3.6654 -2.0393 -1.3961 40 1 1.9970 -2.2024 -3.5240 41 1 3.4699 -1.2031 -3.5039 42 1 3.1050 -2.1309 -9.4277 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123156038.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:03 Heat of formation + Delta-G solvation = -52.268767 kcal Electronic energy + Delta-G solvation = -26548.200474 eV Core-core repulsion = 22568.316711 eV Total energy + Delta-G solvation = -3979.883763 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.01566 -41.60831 -40.84622 -38.90433 -35.92639 -34.70729 -33.58310 -33.38528 -31.54966 -30.34944 -29.47717 -27.88722 -26.91766 -24.78456 -24.21895 -23.43335 -21.73993 -20.43015 -19.56419 -19.19898 -18.69767 -18.13523 -17.43239 -17.15657 -17.08317 -16.96511 -16.54505 -16.44307 -16.06988 -15.69806 -15.20521 -15.11569 -14.92552 -14.56512 -14.49839 -14.09645 -14.06488 -13.85019 -13.62092 -13.39872 -13.36219 -13.11783 -13.03970 -12.88453 -12.62127 -12.44329 -12.21064 -11.90407 -11.74016 -11.35494 -11.20224 -10.94401 -10.71453 -10.67736 -10.58250 -9.73664 -9.04649 -8.77313 -8.54979 -6.26386 0.09791 0.39242 0.93222 1.27831 1.42550 1.50367 1.51486 1.85910 2.03535 2.21928 2.64542 2.73250 2.83326 2.94001 3.33136 3.45224 3.75707 3.78886 3.93321 3.93579 4.11345 4.15861 4.26623 4.27558 4.33779 4.38167 4.43194 4.60833 4.72092 4.78955 4.81466 4.87257 4.95609 5.00691 5.12587 5.27605 5.30576 5.49126 5.56889 5.67257 5.95678 6.07274 6.34216 6.38632 6.90156 6.94319 7.07499 8.57543 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.009927 B = 0.003214 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2819.976000 B = 8709.348731 C =10636.144259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.125 3.875 3 H 0.058 0.942 4 C -0.114 4.114 5 C 0.147 3.853 6 H 0.150 0.850 7 N -0.711 5.711 8 C 0.423 3.577 9 C -0.243 4.243 10 C -0.002 4.002 11 C -0.252 4.252 12 C 0.319 3.681 13 F -0.130 7.130 14 N -0.618 5.618 15 C 0.070 3.930 16 N -0.608 5.608 17 C 0.547 3.453 18 O -0.560 6.560 19 C -0.101 4.101 20 S -0.175 6.175 21 C -0.530 4.530 22 H 0.061 0.939 23 C 0.049 3.951 24 N -0.915 5.915 25 Si 0.913 3.087 26 H -0.259 1.259 27 H -0.240 1.240 28 H -0.258 1.258 29 H 0.068 0.932 30 H 0.088 0.912 31 H 0.030 0.970 32 H 0.106 0.894 33 H 0.128 0.872 34 H 0.401 0.599 35 H 0.174 0.826 36 H 0.184 0.816 37 H 0.162 0.838 38 H 0.112 0.888 39 H 0.070 0.930 40 H 0.111 0.889 41 H 0.098 0.902 42 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.662 -5.261 28.800 29.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.023 3.977 3 H 0.076 0.924 4 C -0.153 4.153 5 C 0.042 3.958 6 H 0.168 0.832 7 N -0.341 5.341 8 C 0.187 3.813 9 C -0.267 4.267 10 C -0.027 4.027 11 C -0.276 4.276 12 C 0.167 3.833 13 F -0.109 7.109 14 N -0.343 5.343 15 C -0.053 4.053 16 N -0.342 5.342 17 C 0.335 3.665 18 O -0.438 6.438 19 C -0.252 4.252 20 S 0.051 5.949 21 C -0.677 4.677 22 H 0.079 0.921 23 C -0.157 4.157 24 N -0.553 5.553 25 Si 0.735 3.265 26 H -0.184 1.184 27 H -0.164 1.164 28 H -0.182 1.182 29 H 0.087 0.913 30 H 0.107 0.893 31 H 0.049 0.951 32 H 0.124 0.876 33 H 0.146 0.854 34 H 0.236 0.764 35 H 0.192 0.808 36 H 0.201 0.799 37 H 0.180 0.820 38 H 0.130 0.870 39 H 0.089 0.911 40 H 0.129 0.871 41 H 0.116 0.884 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.505 -3.077 28.131 28.339 hybrid contribution 1.119 -0.504 -1.033 1.604 sum 2.624 -3.581 27.098 27.459 Atomic orbital electron populations 1.22086 0.94432 1.02771 1.02294 1.21792 0.95114 0.96206 0.84622 0.92405 1.23074 0.96415 1.00676 0.95089 1.22391 0.83590 0.95456 0.94412 0.83224 1.44648 1.00931 1.09709 1.78819 1.18168 0.84485 0.89203 0.89446 1.21880 1.00772 0.92876 1.11208 1.21716 0.89998 1.01895 0.89105 1.21823 1.03492 0.90485 1.11797 1.18081 0.81638 0.86422 0.97196 1.91579 1.53101 1.72828 1.93383 1.66086 0.98947 1.43447 1.25775 1.23347 0.95925 0.89023 0.97042 1.48431 1.52812 1.29268 1.03716 1.19557 0.79729 0.84333 0.82923 1.90679 1.40866 1.28664 1.83612 1.23190 1.04325 1.03059 0.94589 1.84706 1.71081 1.40272 0.98814 1.22428 1.37910 1.13497 0.93874 0.92062 1.25529 0.95417 0.98615 0.96144 1.70012 1.43458 1.37662 1.04174 0.85894 0.79810 0.80949 0.79897 1.18394 1.16394 1.18205 0.91323 0.89323 0.95058 0.87595 0.85393 0.76404 0.80823 0.79897 0.82001 0.87015 0.91136 0.87095 0.88377 0.91290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.91 9.10 71.98 0.66 -2.26 16 2 C 0.13 2.22 3.45 45.34 0.16 2.37 16 3 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 4 C -0.11 -0.80 6.07 31.78 0.19 -0.61 16 5 C 0.15 1.24 3.14 46.46 0.15 1.39 16 6 H 0.15 0.20 6.32 -2.39 -0.02 0.18 16 7 N -0.71 -10.78 5.37 -317.62 -1.71 -12.48 16 8 C 0.42 7.90 7.65 133.03 1.02 8.91 16 9 C -0.24 -2.90 9.25 22.50 0.21 -2.69 16 10 C 0.00 -0.02 10.16 22.43 0.23 0.21 16 11 C -0.25 -3.97 10.08 22.43 0.23 -3.75 16 12 C 0.32 7.52 8.41 84.68 0.71 8.23 16 13 F -0.13 -3.35 17.29 44.97 0.78 -2.57 16 14 N -0.62 -15.73 10.40 -194.33 -2.02 -17.75 16 15 C 0.07 1.03 6.41 86.93 0.56 1.58 16 16 N -0.61 -14.27 3.06 -787.63 -2.41 -16.69 16 17 C 0.55 19.49 7.66 87.66 0.67 20.16 16 18 O -0.56 -24.52 14.90 -3.04 -0.05 -24.57 16 19 C -0.10 -3.97 5.16 71.24 0.37 -3.60 16 20 S -0.18 -9.10 18.54 -56.49 -1.05 -10.15 16 21 C -0.53 -31.34 10.04 67.96 0.68 -30.65 16 22 H 0.06 3.82 8.03 -2.91 -0.02 3.79 16 23 C 0.05 2.89 5.50 84.86 0.47 3.35 16 24 N -0.92 -56.11 13.97 21.65 0.30 -55.81 16 25 Si 0.91 45.63 27.74 68.60 1.90 47.53 16 26 H -0.26 -12.55 7.11 99.48 0.71 -11.85 16 27 H -0.24 -12.10 6.73 99.48 0.67 -11.43 16 28 H -0.26 -12.07 7.11 99.48 0.71 -11.36 16 29 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.03 0.85 6.88 -2.39 -0.02 0.84 16 32 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.13 0.25 7.85 -2.39 -0.02 0.24 16 34 H 0.40 7.25 8.79 -92.71 -0.82 6.43 16 35 H 0.17 0.80 6.16 -2.91 -0.02 0.78 16 36 H 0.18 0.52 8.06 -2.91 -0.02 0.49 16 37 H 0.16 1.80 8.06 -2.91 -0.02 1.77 16 38 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.07 1.28 7.48 -2.39 -0.02 1.27 16 40 H 0.11 3.97 8.14 -2.39 -0.02 3.96 16 41 H 0.10 3.76 7.85 -2.39 -0.02 3.74 16 42 H 0.28 15.71 8.31 -92.70 -0.77 14.94 16 Total: -1.00 -83.27 366.92 2.24 -81.03 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: 0.21 Total: 8.81 kcal Atomic # 6 Polarization: -3.63 SS G_CDS: 6.29 Total: 2.66 kcal Atomic # 7 Polarization: -96.90 SS G_CDS: -5.84 Total: -102.73 kcal Atomic # 8 Polarization: -24.52 SS G_CDS: -0.05 Total: -24.57 kcal Atomic # 9 Polarization: -3.35 SS G_CDS: 0.78 Total: -2.57 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 1.90 Total: 47.53 kcal Atomic # 16 Polarization: -9.10 SS G_CDS: -1.05 Total: -10.15 kcal Total: -83.27 2.24 -81.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123156038.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.759 kcal (2) G-P(sol) polarization free energy of solvation -83.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds