Wall clock time and date at job start Tue Mar 31 2020 23:05:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.86934 * 2 1 4 4 C 1.54324 * 109.88442 * 121.02052 * 2 1 3 5 5 C 1.55151 * 102.94073 * 141.61113 * 4 2 1 6 6 H 1.09000 * 111.00244 * 82.57334 * 5 4 2 7 7 N 1.46499 * 111.00307 * 206.42262 * 5 4 2 8 8 C 1.38999 * 119.99998 * 205.00170 * 7 5 4 9 9 C 1.39065 * 119.68811 * 359.72713 * 8 7 5 10 10 C 1.38379 * 119.15559 * 179.75191 * 9 8 7 11 11 C 1.38765 * 118.53448 * 0.51188 * 10 9 8 12 12 C 1.38368 * 119.30110 * 359.75158 * 11 10 9 13 13 F 1.35110 * 119.60427 * 179.97438 * 12 11 10 14 14 N 1.32143 * 120.79729 * 359.97438 * 12 11 10 15 15 C 1.54905 * 101.58488 * 324.49594 * 5 4 2 16 16 N 1.47028 * 109.88230 * 238.98982 * 2 1 3 17 17 C 1.34775 * 125.64515 * 61.60466 * 16 2 1 18 18 O 1.21276 * 120.00641 * 0.02562 * 17 16 2 19 19 C 1.50706 * 119.99394 * 179.97438 * 17 16 2 20 20 S 1.81004 * 109.46843 * 180.02562 * 19 17 16 21 21 C 1.76201 * 99.99669 * 180.02562 * 20 19 17 22 22 H 1.07993 * 120.00474 * 0.02562 * 21 20 19 23 23 C 1.38800 * 119.99744 * 179.97438 * 21 20 19 24 24 N 1.31624 * 120.00177 * 179.97438 * 23 21 20 25 25 Si 1.86797 * 120.00023 * 0.02562 * 23 21 20 26 26 H 1.48499 * 109.47366 * 90.00046 * 25 23 21 27 27 H 1.48505 * 109.47375 * 209.99973 * 25 23 21 28 28 H 1.48503 * 109.47202 * 329.99771 * 25 23 21 29 29 H 1.08998 * 109.47007 * 299.29401 * 1 2 3 30 30 H 1.08996 * 109.47351 * 59.29842 * 1 2 3 31 31 H 1.08999 * 109.46680 * 179.29541 * 1 2 3 32 32 H 1.08997 * 110.71657 * 259.97367 * 4 2 1 33 33 H 1.09002 * 110.71774 * 23.06665 * 4 2 1 34 34 H 0.97001 * 119.99585 * 25.00155 * 7 5 4 35 35 H 1.07997 * 120.42508 * 0.02562 * 9 8 7 36 36 H 1.07997 * 120.73821 * 180.24290 * 10 9 8 37 37 H 1.07999 * 120.34734 * 179.77142 * 11 10 9 38 38 H 1.09001 * 110.36617 * 155.84513 * 15 5 4 39 39 H 1.09002 * 110.36944 * 278.06458 * 15 5 4 40 40 H 1.08994 * 109.47096 * 300.00146 * 19 17 16 41 41 H 1.09003 * 109.46962 * 60.00648 * 19 17 16 42 42 H 0.96997 * 120.00653 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0550 -0.7479 1.2437 5 6 3.2877 -1.5132 0.6943 6 1 4.1654 -0.8678 0.6615 7 7 3.5533 -2.7175 1.4851 8 6 4.8356 -3.2522 1.5276 9 6 5.8603 -2.6421 0.8124 10 6 7.1338 -3.1808 0.8666 11 6 7.3388 -4.3222 1.6286 12 6 6.2729 -4.8813 2.3111 13 9 6.4655 -5.9930 3.0544 14 7 5.0688 -4.3411 2.2446 15 6 2.8146 -1.8804 -0.7343 16 7 2.0301 -0.7123 -1.1850 17 6 1.8074 -0.3583 -2.4663 18 8 1.1436 0.6251 -2.7172 19 6 2.3843 -1.1841 -3.5872 20 16 1.9132 -0.4570 -5.1764 21 6 2.6971 -1.5895 -6.2753 22 1 3.2576 -2.4242 -5.8812 23 6 2.5935 -1.4092 -7.6477 24 7 3.1795 -2.2549 -8.4686 25 14 1.6236 0.0343 -8.3295 26 1 2.5251 1.2027 -8.4945 27 1 1.0462 -0.3353 -9.6468 28 1 0.5283 0.3830 -7.3893 29 1 -0.3633 0.5028 0.8962 30 1 -0.3634 0.5247 -0.8836 31 1 -0.3632 -1.0276 -0.0126 32 1 2.3530 -0.0433 2.0200 33 1 1.3040 -1.4415 1.6220 34 1 2.8343 -3.1417 1.9791 35 1 5.6657 -1.7566 0.2256 36 1 7.9493 -2.7254 0.3244 37 1 8.3201 -4.7693 1.6886 38 1 3.6717 -2.0355 -1.3896 39 1 2.1903 -2.7735 -0.7095 40 1 3.4709 -1.2013 -3.5037 41 1 1.9988 -2.2018 -3.5244 42 1 3.1074 -2.1288 -9.4277 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123156039.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:08 Heat of formation + Delta-G solvation = -27.772583 kcal Electronic energy + Delta-G solvation = -26200.380223 eV Core-core repulsion = 22221.558694 eV Total energy + Delta-G solvation = -3978.821529 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.26939 -40.79459 -40.00691 -37.83781 -35.41109 -32.96600 -32.47672 -32.35706 -30.86893 -29.10710 -28.65805 -26.16395 -25.64511 -24.11426 -23.70148 -22.20574 -21.34733 -19.22257 -18.59589 -17.96598 -17.71110 -17.09207 -16.51736 -16.37239 -16.32049 -15.75047 -15.29798 -15.04728 -14.97426 -14.57177 -14.14156 -13.95872 -13.76811 -13.64891 -13.44787 -13.32411 -13.15004 -12.84837 -12.73713 -12.56326 -12.19935 -12.12322 -11.89539 -11.31974 -11.26827 -11.12897 -11.03534 -10.74291 -10.63796 -10.08159 -10.05152 -9.88810 -9.55297 -9.03464 -8.73546 -8.54174 -8.21040 -6.96088 -6.31760 -4.04109 0.72435 0.94966 2.27530 2.65739 2.86556 3.14041 3.30482 3.34206 3.47631 3.52495 3.59188 3.97982 4.15203 4.26876 4.30197 4.45210 4.47556 4.63600 4.71522 4.81304 4.85524 4.87456 5.06692 5.07391 5.23485 5.24113 5.35059 5.37195 5.40889 5.48298 5.49602 5.54076 5.71232 5.84807 5.88263 5.95356 6.09815 6.13051 6.33421 6.48989 6.99233 7.45215 7.53414 7.91165 8.35128 8.38712 9.14218 10.77463 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.011856 B = 0.002726 C = 0.002293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2361.086226 B =10269.036106 C =12208.979009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.138 3.862 3 H 0.080 0.920 4 C -0.132 4.132 5 C 0.141 3.859 6 H 0.106 0.894 7 N -0.708 5.708 8 C 0.440 3.560 9 C -0.248 4.248 10 C -0.004 4.004 11 C -0.254 4.254 12 C 0.354 3.646 13 F -0.114 7.114 14 N -0.577 5.577 15 C 0.085 3.915 16 N -0.621 5.621 17 C 0.550 3.450 18 O -0.512 6.512 19 C -0.119 4.119 20 S -0.141 6.141 21 C -0.521 4.521 22 H 0.088 0.912 23 C 0.096 3.904 24 N -0.880 5.880 25 Si 0.856 3.144 26 H -0.267 1.267 27 H -0.274 1.274 28 H -0.235 1.235 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.056 0.944 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.409 0.591 35 H 0.142 0.858 36 H 0.146 0.854 37 H 0.144 0.856 38 H 0.084 0.916 39 H 0.076 0.924 40 H 0.096 0.904 41 H 0.096 0.904 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.713 -0.365 24.806 25.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.035 3.965 3 H 0.098 0.902 4 C -0.171 4.171 5 C 0.034 3.966 6 H 0.124 0.876 7 N -0.340 5.340 8 C 0.204 3.796 9 C -0.273 4.273 10 C -0.030 4.030 11 C -0.278 4.278 12 C 0.201 3.799 13 F -0.093 7.093 14 N -0.301 5.301 15 C -0.040 4.040 16 N -0.359 5.359 17 C 0.339 3.661 18 O -0.386 6.386 19 C -0.270 4.270 20 S 0.085 5.915 21 C -0.669 4.669 22 H 0.106 0.894 23 C -0.113 4.113 24 N -0.516 5.516 25 Si 0.681 3.319 26 H -0.192 1.192 27 H -0.199 1.199 28 H -0.159 1.159 29 H 0.082 0.918 30 H 0.094 0.906 31 H 0.075 0.925 32 H 0.109 0.891 33 H 0.104 0.896 34 H 0.246 0.754 35 H 0.160 0.840 36 H 0.164 0.836 37 H 0.162 0.838 38 H 0.103 0.897 39 H 0.094 0.906 40 H 0.114 0.886 41 H 0.114 0.886 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.070 0.807 24.511 24.716 hybrid contribution 0.893 -0.940 -0.336 1.339 sum 3.962 -0.133 24.176 24.499 Atomic orbital electron populations 1.22153 0.94390 1.02468 1.03188 1.21464 0.95124 0.96474 0.83473 0.90196 1.23021 0.96690 0.99845 0.97498 1.22150 0.98994 0.85555 0.89908 0.87596 1.44383 1.07074 1.29377 1.53135 1.17768 0.86275 0.87046 0.88503 1.21534 0.93231 1.05189 1.07339 1.21250 0.96619 0.92259 0.92853 1.21526 0.99975 1.01161 1.05106 1.17640 0.89001 0.83566 0.89736 1.91631 1.94716 1.48798 1.74136 1.66184 1.23824 1.13993 1.26060 1.22821 0.96335 0.89589 0.95264 1.48535 1.53896 1.28519 1.04906 1.19965 0.79805 0.84970 0.81371 1.90700 1.38542 1.26853 1.82470 1.23276 1.04018 1.02491 0.97170 1.84784 1.70926 1.40228 0.95517 1.22295 1.37907 1.13880 0.92818 0.89406 1.24709 0.94531 0.96223 0.95806 1.69931 1.42161 1.35981 1.03539 0.86741 0.82245 0.82770 0.80133 1.19183 1.19921 1.15918 0.91822 0.90631 0.92484 0.89111 0.89554 0.75388 0.84020 0.83596 0.83804 0.89719 0.90625 0.88615 0.88608 0.91903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 9.10 37.16 0.34 -1.32 16 2 C 0.14 1.33 3.45 -66.95 -0.23 1.10 16 3 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 4 C -0.13 -0.80 6.12 -24.90 -0.15 -0.95 16 5 C 0.14 0.94 3.12 -65.79 -0.21 0.74 16 6 H 0.11 0.64 6.33 -51.93 -0.33 0.32 16 7 N -0.71 -5.11 5.37 -51.87 -0.28 -5.39 16 8 C 0.44 4.04 7.65 -155.02 -1.19 2.86 16 9 C -0.25 -1.95 9.24 -39.22 -0.36 -2.32 16 10 C 0.00 -0.03 10.16 -39.33 -0.40 -0.43 16 11 C -0.25 -2.03 10.08 -39.34 -0.40 -2.43 16 12 C 0.35 3.68 8.41 -17.37 -0.15 3.53 16 13 F -0.11 -1.23 17.29 2.25 0.04 -1.19 16 14 N -0.58 -6.38 10.40 -12.77 -0.13 -6.51 16 15 C 0.09 0.79 6.41 -2.35 -0.02 0.78 16 16 N -0.62 -7.58 3.08 -162.75 -0.50 -8.09 16 17 C 0.55 9.46 7.66 -10.98 -0.08 9.37 16 18 O -0.51 -10.56 14.90 5.56 0.08 -10.47 16 19 C -0.12 -2.26 5.18 36.01 0.19 -2.07 16 20 S -0.14 -3.51 18.55 -107.50 -1.99 -5.50 16 21 C -0.52 -14.82 10.04 30.94 0.31 -14.51 16 22 H 0.09 2.61 8.03 -52.49 -0.42 2.19 16 23 C 0.10 2.78 5.50 -17.43 -0.10 2.69 16 24 N -0.88 -26.32 13.97 55.49 0.78 -25.54 16 25 Si 0.86 21.53 27.74 -169.99 -4.71 16.82 16 26 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 27 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 28 H -0.24 -5.90 6.74 56.52 0.38 -5.52 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.07 1.02 6.89 -51.93 -0.36 0.66 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.09 0.46 7.72 -51.93 -0.40 0.06 16 34 H 0.41 2.70 8.69 -40.82 -0.35 2.34 16 35 H 0.14 0.91 6.16 -52.49 -0.32 0.59 16 36 H 0.15 0.65 8.06 -52.49 -0.42 0.23 16 37 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 38 H 0.08 0.80 7.50 -51.93 -0.39 0.41 16 39 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.10 1.68 7.86 -51.92 -0.41 1.27 16 41 H 0.10 1.73 8.14 -51.92 -0.42 1.31 16 42 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 366.82 15.07 5.53 5.53 Total: -1.00 -34.25 366.82 -9.16 -43.41 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -5.52 Total: -0.11 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: -2.44 Total: -2.96 kcal Atomic # 7 Polarization: -45.39 SS G_CDS: -0.14 Total: -45.53 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.08 Total: -10.47 kcal Atomic # 9 Polarization: -1.23 SS G_CDS: 0.04 Total: -1.19 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.71 Total: 16.82 kcal Atomic # 16 Polarization: -3.51 SS G_CDS: -1.99 Total: -5.50 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.25 -9.16 -43.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123156039.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.635 kcal (2) G-P(sol) polarization free energy of solvation -34.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds