Wall clock time and date at job start Tue Mar 31 2020 23:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.86934 * 2 1 4 4 C 1.54324 * 109.88442 * 121.02052 * 2 1 3 5 5 C 1.55151 * 102.94073 * 141.61113 * 4 2 1 6 6 H 1.09000 * 111.00244 * 82.57334 * 5 4 2 7 7 N 1.46499 * 111.00307 * 206.42262 * 5 4 2 8 8 C 1.38999 * 119.99998 * 205.00170 * 7 5 4 9 9 C 1.39065 * 119.68811 * 359.72713 * 8 7 5 10 10 C 1.38379 * 119.15559 * 179.75191 * 9 8 7 11 11 C 1.38765 * 118.53448 * 0.51188 * 10 9 8 12 12 C 1.38368 * 119.30110 * 359.75158 * 11 10 9 13 13 F 1.35110 * 119.60427 * 179.97438 * 12 11 10 14 14 N 1.32143 * 120.79729 * 359.97438 * 12 11 10 15 15 C 1.54905 * 101.58488 * 324.49594 * 5 4 2 16 16 N 1.47028 * 109.88230 * 238.98982 * 2 1 3 17 17 C 1.34775 * 125.64515 * 61.60466 * 16 2 1 18 18 O 1.21276 * 120.00641 * 0.02562 * 17 16 2 19 19 C 1.50706 * 119.99394 * 179.97438 * 17 16 2 20 20 S 1.81004 * 109.46843 * 180.02562 * 19 17 16 21 21 C 1.76201 * 99.99669 * 180.02562 * 20 19 17 22 22 H 1.07993 * 120.00474 * 0.02562 * 21 20 19 23 23 C 1.38800 * 119.99744 * 179.97438 * 21 20 19 24 24 N 1.31624 * 120.00177 * 179.97438 * 23 21 20 25 25 Si 1.86797 * 120.00023 * 0.02562 * 23 21 20 26 26 H 1.48499 * 109.47366 * 90.00046 * 25 23 21 27 27 H 1.48505 * 109.47375 * 209.99973 * 25 23 21 28 28 H 1.48503 * 109.47202 * 329.99771 * 25 23 21 29 29 H 1.08998 * 109.47007 * 299.29401 * 1 2 3 30 30 H 1.08996 * 109.47351 * 59.29842 * 1 2 3 31 31 H 1.08999 * 109.46680 * 179.29541 * 1 2 3 32 32 H 1.08997 * 110.71657 * 259.97367 * 4 2 1 33 33 H 1.09002 * 110.71774 * 23.06665 * 4 2 1 34 34 H 0.97001 * 119.99585 * 25.00155 * 7 5 4 35 35 H 1.07997 * 120.42508 * 0.02562 * 9 8 7 36 36 H 1.07997 * 120.73821 * 180.24290 * 10 9 8 37 37 H 1.07999 * 120.34734 * 179.77142 * 11 10 9 38 38 H 1.09001 * 110.36617 * 155.84513 * 15 5 4 39 39 H 1.09002 * 110.36944 * 278.06458 * 15 5 4 40 40 H 1.08994 * 109.47096 * 300.00146 * 19 17 16 41 41 H 1.09003 * 109.46962 * 60.00648 * 19 17 16 42 42 H 0.96997 * 120.00653 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0550 -0.7479 1.2437 5 6 3.2877 -1.5132 0.6943 6 1 4.1654 -0.8678 0.6615 7 7 3.5533 -2.7175 1.4851 8 6 4.8356 -3.2522 1.5276 9 6 5.8603 -2.6421 0.8124 10 6 7.1338 -3.1808 0.8666 11 6 7.3388 -4.3222 1.6286 12 6 6.2729 -4.8813 2.3111 13 9 6.4655 -5.9930 3.0544 14 7 5.0688 -4.3411 2.2446 15 6 2.8146 -1.8804 -0.7343 16 7 2.0301 -0.7123 -1.1850 17 6 1.8074 -0.3583 -2.4663 18 8 1.1436 0.6251 -2.7172 19 6 2.3843 -1.1841 -3.5872 20 16 1.9132 -0.4570 -5.1764 21 6 2.6971 -1.5895 -6.2753 22 1 3.2576 -2.4242 -5.8812 23 6 2.5935 -1.4092 -7.6477 24 7 3.1795 -2.2549 -8.4686 25 14 1.6236 0.0343 -8.3295 26 1 2.5251 1.2027 -8.4945 27 1 1.0462 -0.3353 -9.6468 28 1 0.5283 0.3830 -7.3893 29 1 -0.3633 0.5028 0.8962 30 1 -0.3634 0.5247 -0.8836 31 1 -0.3632 -1.0276 -0.0126 32 1 2.3530 -0.0433 2.0200 33 1 1.3040 -1.4415 1.6220 34 1 2.8343 -3.1417 1.9791 35 1 5.6657 -1.7566 0.2256 36 1 7.9493 -2.7254 0.3244 37 1 8.3201 -4.7693 1.6886 38 1 3.6717 -2.0355 -1.3896 39 1 2.1903 -2.7735 -0.7095 40 1 3.4709 -1.2013 -3.5037 41 1 1.9988 -2.2018 -3.5244 42 1 3.1074 -2.1288 -9.4277 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123156039.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:05:07 Heat of formation + Delta-G solvation = -50.213508 kcal Electronic energy + Delta-G solvation = -26201.353335 eV Core-core repulsion = 22221.558694 eV Total energy + Delta-G solvation = -3979.794641 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.116 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.01207 -41.56779 -40.89625 -38.89473 -36.16473 -34.68372 -33.60440 -33.39088 -31.57502 -30.36849 -29.41808 -27.86322 -26.92210 -24.81240 -24.37468 -23.10578 -21.99987 -20.44946 -19.54071 -19.24544 -18.67135 -18.15760 -17.49637 -17.12357 -17.07219 -16.99218 -16.54402 -16.38067 -16.05923 -15.89594 -15.16259 -14.91983 -14.83470 -14.57640 -14.46046 -14.35000 -14.09810 -14.02007 -13.62508 -13.41237 -13.34832 -13.17677 -13.01357 -12.91022 -12.65563 -12.57765 -12.02744 -11.87712 -11.81551 -11.34305 -11.17844 -10.95031 -10.74836 -10.68146 -10.55205 -9.77761 -9.01468 -8.82404 -8.52345 -6.23583 0.06913 0.35366 0.94944 1.30855 1.42859 1.50102 1.51352 1.70728 2.11474 2.24295 2.66528 2.70191 2.85965 2.91568 3.34690 3.44440 3.70524 3.76753 3.86929 3.92485 4.08035 4.15043 4.15623 4.26686 4.30535 4.37454 4.41346 4.57287 4.69050 4.71813 4.76659 4.88178 4.91551 4.98285 5.11449 5.26847 5.27871 5.44320 5.52040 5.69754 5.90489 6.10366 6.30688 6.39643 6.91524 6.92693 7.06318 8.60106 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.011856 B = 0.002726 C = 0.002293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2361.086226 B =10269.036106 C =12208.979009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.132 3.868 3 H 0.079 0.921 4 C -0.116 4.116 5 C 0.153 3.847 6 H 0.120 0.880 7 N -0.701 5.701 8 C 0.427 3.573 9 C -0.249 4.249 10 C -0.004 4.004 11 C -0.249 4.249 12 C 0.325 3.675 13 F -0.125 7.125 14 N -0.605 5.605 15 C 0.077 3.923 16 N -0.609 5.609 17 C 0.552 3.448 18 O -0.554 6.554 19 C -0.105 4.105 20 S -0.171 6.171 21 C -0.529 4.529 22 H 0.061 0.939 23 C 0.046 3.954 24 N -0.917 5.917 25 Si 0.914 3.086 26 H -0.261 1.261 27 H -0.260 1.260 28 H -0.237 1.237 29 H 0.090 0.910 30 H 0.037 0.963 31 H 0.057 0.943 32 H 0.117 0.883 33 H 0.099 0.901 34 H 0.412 0.588 35 H 0.159 0.841 36 H 0.176 0.824 37 H 0.163 0.837 38 H 0.085 0.915 39 H 0.077 0.923 40 H 0.111 0.889 41 H 0.104 0.896 42 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.151 0.653 26.578 27.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.029 3.971 3 H 0.097 0.903 4 C -0.154 4.154 5 C 0.047 3.953 6 H 0.138 0.862 7 N -0.333 5.333 8 C 0.191 3.809 9 C -0.274 4.274 10 C -0.029 4.029 11 C -0.273 4.273 12 C 0.173 3.827 13 F -0.104 7.104 14 N -0.329 5.329 15 C -0.048 4.048 16 N -0.344 5.344 17 C 0.339 3.661 18 O -0.432 6.432 19 C -0.256 4.256 20 S 0.055 5.945 21 C -0.676 4.676 22 H 0.079 0.921 23 C -0.159 4.159 24 N -0.555 5.555 25 Si 0.736 3.264 26 H -0.185 1.185 27 H -0.184 1.184 28 H -0.161 1.161 29 H 0.109 0.891 30 H 0.056 0.944 31 H 0.076 0.924 32 H 0.135 0.865 33 H 0.117 0.883 34 H 0.250 0.750 35 H 0.176 0.824 36 H 0.193 0.807 37 H 0.181 0.819 38 H 0.103 0.897 39 H 0.096 0.904 40 H 0.129 0.871 41 H 0.122 0.878 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.525 1.791 26.337 26.632 hybrid contribution 0.812 -1.342 -0.746 1.736 sum 4.337 0.449 25.591 25.960 Atomic orbital electron populations 1.22112 0.94750 1.02271 1.02711 1.21741 0.94917 0.96867 0.83566 0.90276 1.22984 0.96349 1.00065 0.96026 1.22065 0.99844 0.85439 0.88000 0.86187 1.44332 1.06642 1.29404 1.52901 1.18014 0.87213 0.86946 0.88751 1.21820 0.93242 1.05478 1.06833 1.21658 0.97279 0.91664 0.92281 1.21800 1.00146 1.01188 1.04180 1.17985 0.89766 0.84020 0.90964 1.91595 1.94793 1.49438 1.74601 1.66102 1.24563 1.15067 1.27215 1.23079 0.96032 0.88500 0.97144 1.48410 1.52903 1.29094 1.04010 1.19529 0.79665 0.84286 0.82586 1.90687 1.40567 1.28521 1.83383 1.23236 1.05124 1.02688 0.94544 1.84683 1.71002 1.40167 0.98637 1.22435 1.37570 1.13747 0.93859 0.92092 1.25557 0.95475 0.98679 0.96212 1.70010 1.43578 1.37711 1.04164 0.85876 0.80968 0.79765 0.79828 1.18515 1.18416 1.16066 0.89077 0.94396 0.92421 0.86468 0.88263 0.75018 0.82357 0.80663 0.81905 0.89706 0.90436 0.87078 0.87820 0.91341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.98 9.10 71.98 0.66 -2.33 16 2 C 0.13 2.21 3.45 45.34 0.16 2.37 16 3 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 4 C -0.12 -0.95 6.12 31.78 0.19 -0.75 16 5 C 0.15 1.54 3.12 46.38 0.14 1.68 16 6 H 0.12 0.96 6.33 -2.39 -0.02 0.94 16 7 N -0.70 -8.26 5.37 -318.02 -1.71 -9.97 16 8 C 0.43 7.00 7.65 133.04 1.02 8.01 16 9 C -0.25 -3.24 9.24 22.50 0.21 -3.03 16 10 C 0.00 -0.04 10.16 22.43 0.23 0.19 16 11 C -0.25 -3.56 10.08 22.43 0.23 -3.33 16 12 C 0.33 6.56 8.41 84.68 0.71 7.27 16 13 F -0.13 -2.72 17.29 44.97 0.78 -1.94 16 14 N -0.60 -12.86 10.40 -194.33 -2.02 -14.88 16 15 C 0.08 1.24 6.41 86.79 0.56 1.80 16 16 N -0.61 -13.79 3.08 -787.22 -2.42 -16.21 16 17 C 0.55 18.57 7.66 87.66 0.67 19.24 16 18 O -0.55 -22.90 14.90 -3.02 -0.04 -22.95 16 19 C -0.11 -3.93 5.18 71.24 0.37 -3.57 16 20 S -0.17 -8.57 18.55 -56.49 -1.05 -9.62 16 21 C -0.53 -30.52 10.04 67.95 0.68 -29.84 16 22 H 0.06 3.72 8.03 -2.91 -0.02 3.70 16 23 C 0.05 2.70 5.50 84.86 0.47 3.16 16 24 N -0.92 -55.50 13.97 21.65 0.30 -55.20 16 25 Si 0.91 44.58 27.74 68.60 1.90 46.49 16 26 H -0.26 -12.35 7.11 99.48 0.71 -11.64 16 27 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 28 H -0.24 -11.53 6.74 99.48 0.67 -10.86 16 29 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.04 1.01 6.89 -2.39 -0.02 0.99 16 31 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.10 0.64 7.72 -2.39 -0.02 0.62 16 34 H 0.41 4.42 8.69 -92.71 -0.81 3.61 16 35 H 0.16 1.46 6.16 -2.91 -0.02 1.44 16 36 H 0.18 0.91 8.06 -2.91 -0.02 0.89 16 37 H 0.16 1.58 8.06 -2.91 -0.02 1.55 16 38 H 0.08 1.41 7.50 -2.39 -0.02 1.39 16 39 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.11 3.80 7.86 -2.40 -0.02 3.78 16 41 H 0.10 3.71 8.14 -2.39 -0.02 3.69 16 42 H 0.28 15.50 8.31 -92.71 -0.77 14.73 16 Total: -1.00 -76.74 366.82 2.24 -74.50 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: 0.22 Total: 8.90 kcal Atomic # 6 Polarization: -5.42 SS G_CDS: 6.29 Total: 0.87 kcal Atomic # 7 Polarization: -90.41 SS G_CDS: -5.85 Total: -96.26 kcal Atomic # 8 Polarization: -22.90 SS G_CDS: -0.04 Total: -22.95 kcal Atomic # 9 Polarization: -2.72 SS G_CDS: 0.78 Total: -1.94 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 1.90 Total: 46.49 kcal Atomic # 16 Polarization: -8.57 SS G_CDS: -1.05 Total: -9.62 kcal Total: -76.74 2.24 -74.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123156039.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.288 kcal (2) G-P(sol) polarization free energy of solvation -76.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds