Wall clock time and date at job start Tue Mar 31 2020 22:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86805 * 119.99877 * 2 1 4 4 H 1.48502 * 109.46841 * 239.99814 * 3 2 1 5 5 H 1.48499 * 109.46981 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47413 * 120.00068 * 3 2 1 7 7 C 1.38801 * 120.00387 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00202 * 179.97438 * 7 2 1 9 9 S 1.76206 * 119.99614 * 0.02562 * 7 2 1 10 10 C 1.80995 * 99.99700 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.46775 * 179.97438 * 10 9 7 12 12 O 1.21282 * 120.00547 * 0.02562 * 11 10 9 13 13 N 1.34784 * 120.00031 * 179.97438 * 11 10 9 14 14 C 1.46496 * 120.00246 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.47129 * 179.97438 * 14 13 11 16 16 N 1.46907 * 109.46988 * 180.02562 * 15 14 13 17 17 C 1.46899 * 110.99959 * 180.02562 * 16 15 14 18 18 C 1.50699 * 109.46948 * 179.97438 * 17 16 15 19 19 O 1.21272 * 120.00141 * 0.02562 * 18 17 16 20 20 N 1.34772 * 119.99763 * 179.97438 * 18 17 16 21 21 C 1.39405 * 119.99960 * 185.08613 * 20 18 17 22 22 C 1.39234 * 120.07954 * 174.92262 * 21 20 18 23 23 N 1.31961 * 119.89562 * 179.97438 * 22 21 20 24 24 C 1.32248 * 120.07636 * 0.02562 * 23 22 21 25 25 C 1.38219 * 120.17080 * 0.25011 * 24 23 22 26 26 N 1.32208 * 120.09330 * 359.48184 * 25 24 23 27 27 H 0.96997 * 120.00299 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.47343 * 60.00257 * 10 9 7 29 29 H 1.08991 * 109.47677 * 299.99775 * 10 9 7 30 30 H 0.97000 * 119.99634 * 0.02562 * 13 11 10 31 31 H 1.09001 * 109.46763 * 60.00116 * 14 13 11 32 32 H 1.08994 * 109.47336 * 300.00536 * 14 13 11 33 33 H 1.08997 * 109.46753 * 60.00555 * 15 14 13 34 34 H 1.09002 * 109.47268 * 300.00225 * 15 14 13 35 35 H 1.00895 * 110.99610 * 56.04587 * 16 15 14 36 36 H 1.09001 * 109.47064 * 59.99649 * 17 16 15 37 37 H 1.08995 * 109.47083 * 300.00029 * 17 16 15 38 38 H 0.97001 * 120.00321 * 5.09104 * 20 18 17 39 39 H 1.07991 * 120.05479 * 359.95781 * 22 21 20 40 40 H 1.08002 * 119.91620 * 179.97438 * 24 23 22 41 41 H 1.08000 * 119.94663 * 179.71994 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1293 -2.7280 0.0005 10 6 2.5159 -3.8913 0.0005 11 6 1.9874 -5.3026 0.0012 12 8 0.7911 -5.5023 0.0011 13 7 2.8442 -6.3431 0.0008 14 6 2.3305 -7.7151 0.0008 15 6 3.5026 -8.6985 -0.0004 16 7 2.9874 -10.0743 -0.0009 17 6 4.0871 -11.0482 -0.0014 18 6 3.5212 -12.4449 -0.0014 19 8 2.3201 -12.6124 -0.0014 20 7 4.3499 -13.5077 -0.0023 21 6 3.8300 -14.7968 -0.1093 22 6 4.6876 -15.8884 -0.2169 23 7 4.1916 -17.1071 -0.3174 24 6 2.8821 -17.2918 -0.3166 25 6 2.0280 -16.2098 -0.2157 26 7 2.5177 -14.9864 -0.1093 27 1 -0.4850 0.8400 -0.0004 28 1 3.1245 -3.7313 0.8905 29 1 3.1245 -3.7314 -0.8894 30 1 3.8009 -6.1834 0.0004 31 1 1.7216 -7.8750 -0.8890 32 1 1.7221 -7.8752 0.8909 33 1 4.1117 -8.5386 0.8892 34 1 4.1105 -8.5382 -0.8908 35 1 2.3675 -10.2279 -0.7821 36 1 4.6999 -10.9047 0.8885 37 1 4.6997 -10.9040 -0.8914 38 1 5.3080 -13.3758 0.0715 39 1 5.7570 -15.7379 -0.2183 40 1 2.4790 -18.2903 -0.3994 41 1 0.9591 -16.3645 -0.2199 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123792375.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:59 Heat of formation + Delta-G solvation = -35.751420 kcal Electronic energy + Delta-G solvation = -24258.599385 eV Core-core repulsion = 20299.351829 eV Total energy + Delta-G solvation = -3959.247556 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.30957 -40.69055 -40.50984 -37.57527 -36.32571 -35.32088 -34.91549 -34.57196 -32.02655 -31.38290 -29.62058 -27.68632 -26.89036 -25.79190 -24.59649 -23.15185 -21.85891 -21.63885 -19.85628 -19.47400 -18.59824 -17.87479 -17.74446 -17.48545 -17.26507 -17.17027 -16.86504 -16.73825 -16.22881 -15.95515 -15.67124 -15.38982 -15.22740 -14.91694 -14.64238 -14.46169 -14.22283 -13.87390 -13.63768 -13.44282 -13.15835 -12.85530 -12.74216 -12.62003 -12.52679 -12.49807 -12.38854 -11.73714 -11.71538 -11.22861 -11.11580 -10.99565 -10.26131 -10.13658 -9.91161 -9.54018 -9.44518 -8.66083 -8.33125 -6.11800 -0.22650 0.15968 1.27114 1.45254 1.47038 1.55693 1.59662 1.61838 1.64470 2.22757 2.29429 2.80645 3.01075 3.09607 3.29308 3.38291 3.40055 3.44885 3.81722 3.85271 4.05336 4.11285 4.18734 4.28481 4.32919 4.38395 4.41849 4.52642 4.52938 4.53627 4.92020 4.94202 5.01573 5.39128 5.42790 5.48797 5.79719 6.04142 6.19858 6.20830 6.44114 6.52221 6.82985 7.07918 7.19107 7.26372 8.75935 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.056704 B = 0.001269 C = 0.001243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.671104 B =22059.826013 C =22514.897321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.013 3.987 3 Si 0.999 3.001 4 H -0.261 1.261 5 H -0.280 1.280 6 H -0.261 1.261 7 C -0.547 4.547 8 H 0.085 0.915 9 S -0.157 6.157 10 C -0.127 4.127 11 C 0.532 3.468 12 O -0.569 6.569 13 N -0.708 5.708 14 C 0.121 3.879 15 C 0.068 3.932 16 N -0.695 5.695 17 C 0.053 3.947 18 C 0.497 3.503 19 O -0.509 6.509 20 N -0.642 5.642 21 C 0.296 3.704 22 C 0.030 3.970 23 N -0.436 5.436 24 C 0.013 3.987 25 C 0.073 3.927 26 N -0.481 5.481 27 H 0.271 0.729 28 H 0.113 0.887 29 H 0.113 0.887 30 H 0.420 0.580 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.101 0.899 34 H 0.065 0.935 35 H 0.348 0.652 36 H 0.135 0.865 37 H 0.100 0.900 38 H 0.442 0.558 39 H 0.206 0.794 40 H 0.199 0.801 41 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.711 -33.706 -1.257 39.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.191 4.191 3 Si 0.820 3.180 4 H -0.186 1.186 5 H -0.205 1.205 6 H -0.186 1.186 7 C -0.695 4.695 8 H 0.103 0.897 9 S 0.070 5.930 10 C -0.279 4.279 11 C 0.317 3.683 12 O -0.447 6.447 13 N -0.363 5.363 14 C -0.003 4.003 15 C -0.061 4.061 16 N -0.329 5.329 17 C -0.079 4.079 18 C 0.284 3.716 19 O -0.379 6.379 20 N -0.293 5.293 21 C 0.061 3.939 22 C -0.135 4.135 23 N -0.150 5.150 24 C -0.146 4.146 25 C -0.086 4.086 26 N -0.203 5.203 27 H 0.080 0.920 28 H 0.131 0.869 29 H 0.131 0.869 30 H 0.257 0.743 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.119 0.881 34 H 0.083 0.917 35 H 0.167 0.833 36 H 0.153 0.847 37 H 0.118 0.882 38 H 0.284 0.716 39 H 0.222 0.778 40 H 0.216 0.784 41 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 16.637 -34.002 -0.581 37.858 hybrid contribution 2.059 1.394 -0.813 2.616 sum 18.696 -32.608 -1.393 37.613 Atomic orbital electron populations 1.70182 1.08068 1.28669 1.47983 1.26139 0.95926 1.03366 0.93694 0.84998 0.77785 0.75620 0.79548 1.18564 1.20537 1.18569 1.23188 0.95407 0.91906 1.58963 0.89692 1.85660 1.10837 0.99445 1.97078 1.23359 1.03444 0.94000 1.07065 1.20129 0.86204 0.86837 0.75104 1.90709 1.17722 1.86146 1.50122 1.45536 1.10427 1.04757 1.75613 1.21183 0.97349 0.80141 1.01627 1.21975 0.94842 0.85764 1.03536 1.59916 1.18684 1.02131 1.52152 1.21877 0.93642 0.86043 1.06299 1.21571 0.86905 0.87678 0.75433 1.90850 1.16618 1.86033 1.44397 1.43489 1.12485 1.01858 1.71453 1.19860 0.90590 0.87698 0.95723 1.23727 1.02403 0.86539 1.00855 1.68440 1.15343 1.23184 1.08071 1.24069 0.89201 1.02202 0.99138 1.24141 1.03457 0.87075 0.93958 1.68442 1.13112 1.25794 1.12906 0.92025 0.86906 0.86869 0.74288 0.92979 0.92777 0.88104 0.91692 0.83317 0.84749 0.88226 0.71617 0.77757 0.78394 0.79443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.33 13.22 21.65 0.29 -56.05 16 2 C 0.01 0.76 5.49 84.86 0.47 1.23 16 3 Si 1.00 43.26 29.55 68.60 2.03 45.29 16 4 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 5 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 6 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 7 C -0.55 -31.07 9.50 67.95 0.65 -30.43 16 8 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 9 S -0.16 -8.77 20.57 -56.49 -1.16 -9.93 16 10 C -0.13 -4.93 6.16 71.24 0.44 -4.49 16 11 C 0.53 19.45 7.85 87.66 0.69 20.14 16 12 O -0.57 -27.03 15.86 -3.03 -0.05 -27.07 16 13 N -0.71 -16.59 5.56 -463.06 -2.57 -19.17 16 14 C 0.12 2.64 5.93 86.38 0.51 3.15 16 15 C 0.07 0.77 5.80 86.30 0.50 1.27 16 16 N -0.70 -9.85 6.12 -517.93 -3.17 -13.02 16 17 C 0.05 0.36 6.17 85.56 0.53 0.89 16 18 C 0.50 7.07 7.83 87.66 0.69 7.75 16 19 O -0.51 -13.20 14.49 -3.00 -0.04 -13.24 16 20 N -0.64 -5.23 5.39 -308.14 -1.66 -6.89 16 21 C 0.30 4.10 7.43 132.89 0.99 5.09 16 22 C 0.03 0.29 11.09 84.91 0.94 1.23 16 23 N -0.44 -5.55 10.49 -194.70 -2.04 -7.59 16 24 C 0.01 0.13 11.21 84.63 0.95 1.08 16 25 C 0.07 1.01 11.22 84.63 0.95 1.96 16 26 N -0.48 -9.65 8.07 -192.42 -1.55 -11.20 16 27 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 28 H 0.11 3.86 8.14 -2.39 -0.02 3.84 16 29 H 0.11 3.85 8.14 -2.40 -0.02 3.83 16 30 H 0.42 6.18 8.47 -92.71 -0.79 5.40 16 31 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 35 H 0.35 5.90 8.43 -89.70 -0.76 5.15 16 36 H 0.13 0.23 8.14 -2.39 -0.02 0.21 16 37 H 0.10 0.07 8.14 -2.39 -0.02 0.05 16 38 H 0.44 -0.96 8.71 -92.71 -0.81 -1.77 16 39 H 0.21 0.15 8.06 -2.92 -0.02 0.13 16 40 H 0.20 0.71 8.06 -2.91 -0.02 0.69 16 41 H 0.19 1.65 8.06 -2.91 -0.02 1.62 16 Total: -1.00 -95.91 377.36 -2.90 -98.81 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -1.25 Total: 11.19 kcal Atomic # 6 Polarization: 0.59 SS G_CDS: 8.29 Total: 8.88 kcal Atomic # 7 Polarization: -103.20 SS G_CDS: -10.72 Total: -113.92 kcal Atomic # 8 Polarization: -40.22 SS G_CDS: -0.09 Total: -40.32 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Atomic # 16 Polarization: -8.77 SS G_CDS: -1.16 Total: -9.93 kcal Total: -95.91 -2.90 -98.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123792375.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.057 kcal (2) G-P(sol) polarization free energy of solvation -95.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds