Wall clock time and date at job start Tue Mar 31 2020 22:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86803 * 119.99425 * 2 1 4 4 H 1.48508 * 109.46808 * 269.99607 * 3 2 1 5 5 H 1.48493 * 109.47421 * 29.99548 * 3 2 1 6 6 H 1.48497 * 109.46772 * 150.00175 * 3 2 1 7 7 C 1.38942 * 120.00269 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00094 * 359.97438 * 7 2 1 9 9 N 1.37093 * 120.00191 * 180.02562 * 7 2 1 10 10 C 1.34780 * 120.00404 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99549 * 0.02562 * 10 9 7 12 12 C 1.50695 * 119.99893 * 179.97438 * 10 9 7 13 13 N 1.46901 * 109.47008 * 179.97438 * 12 10 9 14 14 C 1.46896 * 111.00245 * 180.02562 * 13 12 10 15 15 C 1.53002 * 109.47243 * 179.97438 * 14 13 12 16 16 N 1.46506 * 109.47035 * 179.97438 * 15 14 13 17 17 C 1.34777 * 119.99873 * 179.97438 * 16 15 14 18 18 O 1.21623 * 120.00076 * 0.02562 * 17 16 15 19 19 C 1.47166 * 120.00223 * 180.02562 * 17 16 15 20 20 S 1.77340 * 128.47483 * 0.02837 * 19 17 16 21 21 N 1.56634 * 95.28461 * 179.97438 * 20 19 17 22 22 N 1.27338 * 109.74220 * 0.02562 * 21 20 19 23 23 C 1.31248 * 120.03562 * 359.71366 * 22 21 20 24 24 C 1.50695 * 124.05491 * 180.34042 * 23 22 21 25 25 C 1.53002 * 117.49940 * 8.91985 * 24 23 22 26 26 C 1.53001 * 117.49764 * 300.25756 * 24 23 22 27 27 H 0.96997 * 120.00153 * 0.02562 * 1 2 3 28 28 H 0.97007 * 119.99814 * 359.97438 * 9 7 2 29 29 H 1.08999 * 109.47659 * 60.00059 * 12 10 9 30 30 H 1.09000 * 109.47620 * 299.99932 * 12 10 9 31 31 H 1.00901 * 110.99921 * 303.95578 * 13 12 10 32 32 H 1.09004 * 109.47041 * 60.00071 * 14 13 12 33 33 H 1.09004 * 109.47535 * 300.00110 * 14 13 12 34 34 H 1.09004 * 109.46930 * 60.00143 * 15 14 13 35 35 H 1.09000 * 109.47312 * 300.00087 * 15 14 13 36 36 H 0.96999 * 120.00080 * 0.02562 * 16 15 14 37 37 H 1.08999 * 115.55284 * 154.59592 * 24 23 22 38 38 H 1.08996 * 117.49748 * 359.97438 * 25 24 23 39 39 H 1.08998 * 117.49582 * 145.02556 * 25 24 23 40 40 H 1.09000 * 117.49973 * 214.97905 * 26 24 23 41 41 H 1.08998 * 117.50301 * 359.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2480 1.6179 0.0000 4 1 2.4956 2.0465 -1.4002 5 1 1.4454 2.6527 0.6999 6 1 3.5456 1.4403 0.7000 7 6 2.0089 -1.2032 0.0005 8 1 1.4690 -2.1386 0.0014 9 7 3.3799 -1.2032 0.0011 10 6 4.0539 -2.3704 0.0021 11 8 3.4474 -3.4208 0.0021 12 6 5.5608 -2.3702 0.0021 13 7 6.0506 -3.7552 0.0040 14 6 7.5190 -3.7943 0.0046 15 6 7.9905 -5.2499 0.0072 16 7 9.4550 -5.2889 0.0073 17 6 10.0976 -6.4736 0.0099 18 8 9.4617 -7.5103 0.0117 19 6 11.5687 -6.5128 0.0105 20 16 12.7087 -5.1544 0.0089 21 7 13.9962 -6.0465 0.0114 22 7 13.6671 -7.2766 0.0129 23 6 12.3997 -7.6176 0.0178 24 6 11.9093 -9.0425 0.0273 25 6 12.9475 -10.1456 0.2418 26 6 12.3232 -9.9399 -1.1407 27 1 -0.4850 0.8400 -0.0004 28 1 3.8649 -0.3631 0.0007 29 1 5.9242 -1.8556 0.8916 30 1 5.9242 -1.8572 -0.8883 31 1 5.6751 -4.2705 0.7860 32 1 7.8956 -3.2893 0.8942 33 1 7.8964 -3.2914 -0.8858 34 1 7.6140 -5.7553 -0.8822 35 1 7.6132 -5.7525 0.8979 36 1 9.9622 -4.4621 0.0062 37 1 10.9173 -9.1954 0.4524 38 1 13.9854 -9.8407 0.3756 39 1 12.6385 -11.0244 0.8077 40 1 11.6038 -10.6835 -1.4836 41 1 12.9500 -9.4996 -1.9162 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001129937267.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:24 Heat of formation + Delta-G solvation = 38.197572 kcal Electronic energy + Delta-G solvation = -24993.978802 eV Core-core repulsion = 21037.937915 eV Total energy + Delta-G solvation = -3956.040887 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.59316 -39.95861 -38.56669 -37.43958 -36.53074 -34.63725 -33.88860 -32.46049 -31.71207 -29.90019 -27.97275 -26.26884 -24.47143 -23.65973 -22.76976 -22.61370 -22.16774 -20.81556 -19.46276 -18.62002 -18.49332 -17.95588 -16.73645 -16.51987 -16.29947 -16.03891 -15.91891 -15.33136 -15.07145 -14.90581 -14.73306 -14.09848 -13.91257 -13.63042 -13.55745 -13.14206 -12.76461 -12.66326 -12.40485 -12.33263 -11.95968 -11.94466 -11.70879 -11.69053 -11.62371 -11.19692 -10.91289 -10.87078 -10.63846 -10.46013 -10.37761 -10.01529 -9.92368 -9.61969 -9.56257 -8.69718 -8.32174 -8.22136 -6.34841 -3.86703 -0.80863 0.24934 0.91970 1.36866 2.41282 2.47510 2.98071 3.03167 3.11742 3.23901 3.51433 3.67604 3.87880 4.00642 4.06635 4.20361 4.45791 4.55538 4.59379 4.66734 4.71043 4.91359 5.12935 5.16526 5.20098 5.26325 5.46777 5.48545 5.59274 5.67370 5.70292 5.71799 5.76623 5.83746 5.88424 6.79504 6.90254 7.12950 7.38305 7.53374 7.55939 8.09960 8.54938 8.90707 9.37738 9.77082 10.78146 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.026710 B = 0.001648 C = 0.001560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.035722 B =16991.158100 C =17940.361095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.042 3.958 3 Si 0.881 3.119 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.270 1.270 7 C -0.306 4.306 8 H 0.120 0.880 9 N -0.589 5.589 10 C 0.448 3.552 11 O -0.563 6.563 12 C 0.050 3.950 13 N -0.664 5.664 14 C 0.048 3.952 15 C 0.120 3.880 16 N -0.719 5.719 17 C 0.603 3.397 18 O -0.506 6.506 19 C -0.288 4.288 20 S 0.416 5.584 21 N -0.249 5.249 22 N -0.247 5.247 23 C 0.135 3.865 24 C -0.092 4.092 25 C -0.160 4.160 26 C -0.154 4.154 27 H 0.274 0.726 28 H 0.370 0.630 29 H 0.047 0.953 30 H 0.089 0.911 31 H 0.355 0.645 32 H 0.035 0.965 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.076 0.924 36 H 0.399 0.601 37 H 0.147 0.853 38 H 0.106 0.894 39 H 0.104 0.896 40 H 0.107 0.893 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.826 -9.822 0.641 31.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.161 4.161 3 Si 0.707 3.293 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.196 1.196 7 C -0.435 4.435 8 H 0.138 0.862 9 N -0.228 5.228 10 C 0.233 3.767 11 O -0.445 6.445 12 C -0.083 4.083 13 N -0.298 5.298 14 C -0.083 4.083 15 C -0.003 4.003 16 N -0.372 5.372 17 C 0.386 3.614 18 O -0.381 6.381 19 C -0.429 4.429 20 S 0.553 5.447 21 N -0.229 5.229 22 N -0.113 5.113 23 C -0.011 4.011 24 C -0.114 4.114 25 C -0.198 4.198 26 C -0.191 4.191 27 H 0.084 0.916 28 H 0.203 0.797 29 H 0.065 0.935 30 H 0.107 0.893 31 H 0.175 0.825 32 H 0.053 0.947 33 H 0.098 0.902 34 H 0.106 0.894 35 H 0.094 0.906 36 H 0.233 0.767 37 H 0.164 0.836 38 H 0.124 0.876 39 H 0.123 0.877 40 H 0.126 0.874 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 30.255 -10.029 -0.037 31.874 hybrid contribution 0.071 1.320 0.914 1.607 sum 30.326 -8.709 0.877 31.564 Atomic orbital electron populations 1.69622 1.05649 1.27545 1.49146 1.25048 0.95502 0.97997 0.97601 0.86662 0.79704 0.84026 0.78904 1.19577 1.20170 1.19566 1.19437 0.79202 0.96681 1.48187 0.86233 1.42196 1.07561 1.06117 1.66974 1.19654 0.88090 0.84635 0.84276 1.90580 1.69354 1.30897 1.53682 1.21705 0.95300 0.89810 1.01482 1.59917 1.04752 1.13354 1.51767 1.22094 0.89839 0.95042 1.01278 1.21406 0.77113 0.97566 1.04210 1.45757 1.08514 1.07479 1.75405 1.16342 0.83403 0.84348 0.77276 1.90851 1.66119 1.32418 1.48718 1.27660 1.00558 0.97322 1.17319 1.82544 0.94219 1.16999 1.50970 1.78920 1.23156 1.01592 1.19268 1.70523 1.17300 1.07337 1.16106 1.21958 0.86009 0.97066 0.96088 1.20696 1.01051 0.82854 1.06782 1.23093 0.98581 0.98755 0.99335 1.23036 1.03258 1.01179 0.91674 0.91566 0.79684 0.93531 0.89263 0.82533 0.94681 0.90224 0.89406 0.90588 0.76723 0.83586 0.87559 0.87733 0.87444 0.88534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.33 13.96 55.50 0.77 -24.56 16 2 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 3 Si 0.88 18.84 27.74 -169.99 -4.71 14.12 16 4 H -0.27 -5.68 7.11 56.52 0.40 -5.27 16 5 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 6 H -0.27 -5.20 6.52 56.52 0.37 -4.84 16 7 C -0.31 -8.50 10.16 -14.94 -0.15 -8.66 16 8 H 0.12 3.81 7.39 -52.48 -0.39 3.42 16 9 N -0.59 -13.55 5.09 -10.97 -0.06 -13.61 16 10 C 0.45 9.73 7.82 -10.99 -0.09 9.65 16 11 O -0.56 -14.72 15.78 5.55 0.09 -14.63 16 12 C 0.05 0.74 6.17 -4.98 -0.03 0.71 16 13 N -0.66 -9.08 6.13 -115.06 -0.70 -9.79 16 14 C 0.05 0.43 5.80 -3.83 -0.02 0.41 16 15 C 0.12 1.09 5.93 -4.04 -0.02 1.07 16 16 N -0.72 -5.36 5.55 -61.46 -0.34 -5.70 16 17 C 0.60 5.79 7.80 -12.64 -0.10 5.69 16 18 O -0.51 -6.42 14.97 5.26 0.08 -6.34 16 19 C -0.29 -2.44 6.81 -35.96 -0.24 -2.69 16 20 S 0.42 2.55 23.05 -107.50 -2.48 0.07 16 21 N -0.25 -2.29 12.51 60.35 0.75 -1.54 16 22 N -0.25 -2.47 10.95 33.42 0.37 -2.10 16 23 C 0.14 1.27 6.59 -82.84 -0.55 0.73 16 24 C -0.09 -0.78 5.63 -91.77 -0.52 -1.30 16 25 C -0.16 -1.08 10.11 -26.69 -0.27 -1.35 16 26 C -0.15 -1.07 10.24 -26.69 -0.27 -1.35 16 27 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 28 H 0.37 7.39 5.76 -40.82 -0.24 7.16 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.35 5.07 8.43 -39.29 -0.33 4.74 16 32 H 0.04 0.27 8.14 -51.93 -0.42 -0.16 16 33 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.40 1.85 7.90 -40.82 -0.32 1.53 16 37 H 0.15 1.35 6.64 -51.93 -0.34 1.01 16 38 H 0.11 0.76 7.80 -51.93 -0.41 0.36 16 39 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.11 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 370.52 15.07 5.58 5.58 Total: -1.00 -34.66 370.52 -8.01 -42.66 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: -5.00 Total: 11.88 kcal Atomic # 6 Polarization: 6.30 SS G_CDS: -2.36 Total: 3.94 kcal Atomic # 7 Polarization: -58.09 SS G_CDS: 0.79 Total: -57.30 kcal Atomic # 8 Polarization: -21.13 SS G_CDS: 0.17 Total: -20.97 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -4.71 Total: 14.12 kcal Atomic # 16 Polarization: 2.55 SS G_CDS: -2.48 Total: 0.07 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.66 -8.01 -42.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129937267.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.861 kcal (2) G-P(sol) polarization free energy of solvation -34.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds