Wall clock time and date at job start Tue Mar 31 2020 22:08:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86803 * 119.99425 * 2 1 4 4 H 1.48508 * 109.46808 * 269.99607 * 3 2 1 5 5 H 1.48493 * 109.47421 * 29.99548 * 3 2 1 6 6 H 1.48497 * 109.46772 * 150.00175 * 3 2 1 7 7 C 1.38942 * 120.00269 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00094 * 359.97438 * 7 2 1 9 9 N 1.37093 * 120.00191 * 180.02562 * 7 2 1 10 10 C 1.34780 * 120.00404 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99549 * 0.02562 * 10 9 7 12 12 C 1.50695 * 119.99893 * 179.97438 * 10 9 7 13 13 N 1.46901 * 109.47008 * 179.97438 * 12 10 9 14 14 C 1.46896 * 111.00245 * 180.02562 * 13 12 10 15 15 C 1.53002 * 109.47243 * 179.97438 * 14 13 12 16 16 N 1.46506 * 109.47035 * 179.97438 * 15 14 13 17 17 C 1.34777 * 119.99873 * 179.97438 * 16 15 14 18 18 O 1.21623 * 120.00076 * 0.02562 * 17 16 15 19 19 C 1.47166 * 120.00223 * 180.02562 * 17 16 15 20 20 S 1.77340 * 128.47483 * 0.02837 * 19 17 16 21 21 N 1.56634 * 95.28461 * 179.97438 * 20 19 17 22 22 N 1.27338 * 109.74220 * 0.02562 * 21 20 19 23 23 C 1.31248 * 120.03562 * 359.71366 * 22 21 20 24 24 C 1.50695 * 124.05491 * 180.34042 * 23 22 21 25 25 C 1.53002 * 117.49940 * 8.91985 * 24 23 22 26 26 C 1.53001 * 117.49764 * 300.25756 * 24 23 22 27 27 H 0.96997 * 120.00153 * 0.02562 * 1 2 3 28 28 H 0.97007 * 119.99814 * 359.97438 * 9 7 2 29 29 H 1.08999 * 109.47659 * 60.00059 * 12 10 9 30 30 H 1.09000 * 109.47620 * 299.99932 * 12 10 9 31 31 H 1.00901 * 110.99921 * 303.95578 * 13 12 10 32 32 H 1.09004 * 109.47041 * 60.00071 * 14 13 12 33 33 H 1.09004 * 109.47535 * 300.00110 * 14 13 12 34 34 H 1.09004 * 109.46930 * 60.00143 * 15 14 13 35 35 H 1.09000 * 109.47312 * 300.00087 * 15 14 13 36 36 H 0.96999 * 120.00080 * 0.02562 * 16 15 14 37 37 H 1.08999 * 115.55284 * 154.59592 * 24 23 22 38 38 H 1.08996 * 117.49748 * 359.97438 * 25 24 23 39 39 H 1.08998 * 117.49582 * 145.02556 * 25 24 23 40 40 H 1.09000 * 117.49973 * 214.97905 * 26 24 23 41 41 H 1.08998 * 117.50301 * 359.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2480 1.6179 0.0000 4 1 2.4956 2.0465 -1.4002 5 1 1.4454 2.6527 0.6999 6 1 3.5456 1.4403 0.7000 7 6 2.0089 -1.2032 0.0005 8 1 1.4690 -2.1386 0.0014 9 7 3.3799 -1.2032 0.0011 10 6 4.0539 -2.3704 0.0021 11 8 3.4474 -3.4208 0.0021 12 6 5.5608 -2.3702 0.0021 13 7 6.0506 -3.7552 0.0040 14 6 7.5190 -3.7943 0.0046 15 6 7.9905 -5.2499 0.0072 16 7 9.4550 -5.2889 0.0073 17 6 10.0976 -6.4736 0.0099 18 8 9.4617 -7.5103 0.0117 19 6 11.5687 -6.5128 0.0105 20 16 12.7087 -5.1544 0.0089 21 7 13.9962 -6.0465 0.0114 22 7 13.6671 -7.2766 0.0129 23 6 12.3997 -7.6176 0.0178 24 6 11.9093 -9.0425 0.0273 25 6 12.9475 -10.1456 0.2418 26 6 12.3232 -9.9399 -1.1407 27 1 -0.4850 0.8400 -0.0004 28 1 3.8649 -0.3631 0.0007 29 1 5.9242 -1.8556 0.8916 30 1 5.9242 -1.8572 -0.8883 31 1 5.6751 -4.2705 0.7860 32 1 7.8956 -3.2893 0.8942 33 1 7.8964 -3.2914 -0.8858 34 1 7.6140 -5.7553 -0.8822 35 1 7.6132 -5.7525 0.8979 36 1 9.9622 -4.4621 0.0062 37 1 10.9173 -9.1954 0.4524 38 1 13.9854 -9.8407 0.3756 39 1 12.6385 -11.0244 0.8077 40 1 11.6038 -10.6835 -1.4836 41 1 12.9500 -9.4996 -1.9162 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001129937267.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:23 Heat of formation + Delta-G solvation = 8.641138 kcal Electronic energy + Delta-G solvation = -24995.260465 eV Core-core repulsion = 21037.937915 eV Total energy + Delta-G solvation = -3957.322550 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.23494 -40.71786 -40.26201 -38.02296 -37.49426 -36.03990 -35.34336 -33.73228 -33.11964 -30.83867 -28.80156 -27.60138 -25.64759 -24.70772 -23.37341 -23.29654 -22.88440 -21.51311 -21.27478 -20.28182 -19.22689 -18.74690 -17.69920 -17.38874 -17.29770 -17.05484 -16.80743 -16.61184 -16.19715 -15.84372 -15.47980 -15.34866 -15.19010 -14.80707 -14.63329 -14.23297 -14.19268 -13.92672 -13.42905 -13.34336 -12.98771 -12.92920 -12.58857 -12.46231 -12.41448 -12.38811 -12.25880 -11.96035 -11.58916 -11.49377 -11.47370 -11.12927 -10.98938 -10.53624 -10.43533 -10.26149 -10.23175 -9.35488 -8.39533 -6.00927 -1.44039 -0.33668 0.32990 0.70503 1.31810 1.38302 1.47057 1.69963 1.75851 1.98213 2.25280 2.61751 2.80735 2.94061 3.16968 3.27137 3.43790 3.63303 3.85847 3.91121 3.95712 4.05113 4.12588 4.19758 4.48166 4.49951 4.52611 4.62651 4.73868 4.89285 4.94424 4.95483 5.09302 5.17611 5.23752 5.53975 5.89267 6.02190 6.21228 6.33643 6.50695 6.61309 6.89663 6.90142 7.41765 7.99063 8.78152 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.026710 B = 0.001648 C = 0.001560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.035722 B =16991.158100 C =17940.361095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.017 4.017 3 Si 0.967 3.033 4 H -0.257 1.257 5 H -0.278 1.278 6 H -0.227 1.227 7 C -0.330 4.330 8 H 0.053 0.947 9 N -0.590 5.590 10 C 0.445 3.555 11 O -0.617 6.617 12 C 0.065 3.935 13 N -0.690 5.690 14 C 0.055 3.945 15 C 0.126 3.874 16 N -0.703 5.703 17 C 0.604 3.396 18 O -0.544 6.544 19 C -0.310 4.310 20 S 0.516 5.484 21 N -0.282 5.282 22 N -0.269 5.269 23 C 0.127 3.873 24 C -0.110 4.110 25 C -0.149 4.149 26 C -0.150 4.150 27 H 0.279 0.721 28 H 0.391 0.609 29 H 0.084 0.916 30 H 0.120 0.880 31 H 0.347 0.653 32 H 0.063 0.937 33 H 0.099 0.901 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.415 0.585 37 H 0.134 0.866 38 H 0.101 0.899 39 H 0.120 0.880 40 H 0.118 0.882 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 33.412 -6.943 0.739 34.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.216 4.216 3 Si 0.787 3.213 4 H -0.182 1.182 5 H -0.203 1.203 6 H -0.150 1.150 7 C -0.460 4.460 8 H 0.071 0.929 9 N -0.232 5.232 10 C 0.233 3.767 11 O -0.501 6.501 12 C -0.067 4.067 13 N -0.323 5.323 14 C -0.074 4.074 15 C 0.002 3.998 16 N -0.356 5.356 17 C 0.388 3.612 18 O -0.422 6.422 19 C -0.450 4.450 20 S 0.653 5.347 21 N -0.263 5.263 22 N -0.134 5.134 23 C -0.021 4.021 24 C -0.132 4.132 25 C -0.187 4.187 26 C -0.188 4.188 27 H 0.088 0.912 28 H 0.227 0.773 29 H 0.102 0.898 30 H 0.138 0.862 31 H 0.166 0.834 32 H 0.081 0.919 33 H 0.117 0.883 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.252 0.748 37 H 0.152 0.848 38 H 0.120 0.880 39 H 0.138 0.862 40 H 0.136 0.864 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 33.911 -7.128 0.059 34.652 hybrid contribution -1.091 0.358 0.876 1.444 sum 32.820 -6.770 0.935 33.525 Atomic orbital electron populations 1.69816 1.08264 1.29253 1.50322 1.26165 0.96482 1.02876 0.96034 0.85333 0.79567 0.76455 0.79932 1.18186 1.20282 1.14998 1.19007 0.81679 0.94868 1.50396 0.92868 1.42014 1.05700 1.07694 1.67786 1.21098 0.91266 0.83240 0.81079 1.90562 1.71524 1.32905 1.55122 1.21627 0.89157 0.91268 1.04621 1.59877 1.07714 1.12723 1.51974 1.22111 0.86870 0.94875 1.03500 1.21216 0.77811 0.97839 1.02889 1.45536 1.07932 1.07677 1.74424 1.16485 0.83802 0.84268 0.76662 1.90836 1.67037 1.33820 1.50492 1.27621 1.00343 0.98843 1.18204 1.82078 0.91247 1.13802 1.47599 1.78637 1.25379 1.02013 1.20288 1.70581 1.17576 1.07797 1.17423 1.22110 0.86189 0.97681 0.96129 1.20690 1.01025 0.83341 1.08152 1.23133 0.97879 0.98462 0.99192 1.23090 1.03277 1.00846 0.91560 0.91193 0.77331 0.89805 0.86169 0.83441 0.91860 0.88251 0.91398 0.91551 0.74752 0.84791 0.88015 0.86192 0.86419 0.88829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.88 13.96 21.66 0.30 -55.58 16 2 C -0.02 -0.93 5.50 84.92 0.47 -0.47 16 3 Si 0.97 37.36 27.74 68.60 1.90 39.27 16 4 H -0.26 -9.43 7.11 99.48 0.71 -8.72 16 5 H -0.28 -10.75 7.11 99.48 0.71 -10.05 16 6 H -0.23 -7.12 6.52 99.48 0.65 -6.48 16 7 C -0.33 -19.00 10.16 84.04 0.85 -18.14 16 8 H 0.05 3.68 7.39 -2.91 -0.02 3.66 16 9 N -0.59 -26.58 5.09 -306.99 -1.56 -28.15 16 10 C 0.45 19.00 7.82 87.65 0.69 19.69 16 11 O -0.62 -33.30 15.78 -3.07 -0.05 -33.35 16 12 C 0.07 1.70 6.17 85.56 0.53 2.23 16 13 N -0.69 -17.15 6.13 -517.93 -3.17 -20.33 16 14 C 0.06 0.78 5.80 86.30 0.50 1.28 16 15 C 0.13 2.07 5.93 86.38 0.51 2.58 16 16 N -0.70 -8.83 5.55 -466.61 -2.59 -11.42 16 17 C 0.60 11.01 7.80 86.59 0.68 11.69 16 18 O -0.54 -14.02 14.97 -4.11 -0.06 -14.08 16 19 C -0.31 -4.86 6.81 24.62 0.17 -4.69 16 20 S 0.52 4.94 23.05 -56.49 -1.30 3.64 16 21 N -0.28 -4.76 12.51 37.02 0.46 -4.30 16 22 N -0.27 -5.22 10.95 -48.18 -0.53 -5.75 16 23 C 0.13 2.33 6.59 42.65 0.28 2.62 16 24 C -0.11 -1.91 5.63 -11.54 -0.06 -1.97 16 25 C -0.15 -1.97 10.11 30.62 0.31 -1.66 16 26 C -0.15 -2.08 10.24 30.62 0.31 -1.77 16 27 H 0.28 15.19 8.31 -92.71 -0.77 14.42 16 28 H 0.39 14.19 5.76 -92.70 -0.53 13.66 16 29 H 0.08 1.63 8.14 -2.39 -0.02 1.62 16 30 H 0.12 2.47 8.14 -2.39 -0.02 2.45 16 31 H 0.35 9.54 8.43 -89.69 -0.76 8.79 16 32 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 33 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.07 1.41 8.14 -2.38 -0.02 1.40 16 35 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.42 2.27 7.90 -92.71 -0.73 1.54 16 37 H 0.13 2.63 6.64 -2.39 -0.02 2.61 16 38 H 0.10 1.45 7.80 -2.39 -0.02 1.43 16 39 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -83.39 370.52 -2.33 -85.72 By element: Atomic # 1 Polarization: 33.91 SS G_CDS: -0.96 Total: 32.95 kcal Atomic # 6 Polarization: 6.15 SS G_CDS: 5.23 Total: 11.38 kcal Atomic # 7 Polarization: -118.43 SS G_CDS: -7.09 Total: -125.51 kcal Atomic # 8 Polarization: -47.32 SS G_CDS: -0.11 Total: -47.43 kcal Atomic # 14 Polarization: 37.36 SS G_CDS: 1.90 Total: 39.27 kcal Atomic # 16 Polarization: 4.94 SS G_CDS: -1.30 Total: 3.64 kcal Total: -83.39 -2.33 -85.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129937267.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.358 kcal (2) G-P(sol) polarization free energy of solvation -83.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds