Wall clock time and date at job start Tue Mar 31 2020 22:23:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86798 * 119.99820 * 2 1 4 4 H 1.48507 * 109.47271 * 239.99713 * 3 2 1 5 5 H 1.48495 * 109.47342 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47225 * 120.00035 * 3 2 1 7 7 C 1.38799 * 120.00184 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00071 * 179.97438 * 7 2 1 9 9 S 1.76201 * 119.99826 * 0.02562 * 7 2 1 10 10 C 1.80998 * 99.99755 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.46985 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00167 * 0.02562 * 11 10 9 13 13 N 1.34776 * 120.00278 * 180.02562 * 11 10 9 14 14 C 1.47080 * 120.88238 * 180.02562 * 13 11 10 15 15 C 1.53248 * 108.51718 * 231.15940 * 14 13 11 16 16 N 1.46891 * 109.34123 * 306.16912 * 15 14 13 17 17 C 1.40341 * 110.99905 * 187.25185 * 16 15 14 18 18 C 1.38578 * 120.83211 * 299.97688 * 17 16 15 19 19 N 1.32616 * 119.17701 * 179.77076 * 18 17 16 20 20 C 1.32197 * 121.00139 * 0.51010 * 19 18 17 21 21 O 1.35556 * 119.08609 * 179.75499 * 20 19 18 22 22 N 1.32301 * 121.82543 * 359.47812 * 20 19 18 23 23 C 1.32835 * 120.70922 * 0.25873 * 22 20 19 24 24 N 1.38803 * 120.53019 * 180.02562 * 23 22 20 25 25 C 1.46903 * 111.26956 * 63.10482 * 16 15 14 26 26 C 1.47077 * 120.88086 * 359.97438 * 13 11 10 27 27 H 0.96999 * 120.00271 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.47453 * 60.00039 * 10 9 7 29 29 H 1.09004 * 109.47550 * 299.99492 * 10 9 7 30 30 H 1.08998 * 109.63193 * 111.45808 * 14 13 11 31 31 H 1.08997 * 109.62958 * 350.86674 * 14 13 11 32 32 H 1.09000 * 109.48672 * 186.20841 * 15 14 13 33 33 H 1.09001 * 109.51332 * 66.14650 * 15 14 13 34 34 H 1.08001 * 120.40947 * 0.04467 * 18 17 16 35 35 H 0.96700 * 114.00289 * 269.73167 * 21 20 19 36 36 H 0.97008 * 119.99359 * 359.97438 * 24 23 22 37 37 H 0.96998 * 120.00639 * 180.02562 * 24 23 22 38 38 H 1.09000 * 109.49143 * 56.85784 * 25 16 15 39 39 H 1.09003 * 109.49310 * 176.92975 * 25 16 15 40 40 H 1.08995 * 109.63439 * 248.55163 * 26 13 11 41 41 H 1.09004 * 109.62840 * 9.13157 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1041 1.6965 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1293 -2.7280 0.0005 10 6 2.5159 -3.8913 0.0005 11 6 1.9874 -5.3027 0.0012 12 8 0.7912 -5.5023 0.0011 13 7 2.8442 -6.3431 0.0018 14 6 2.3496 -7.7282 0.0019 15 6 3.0437 -8.4928 1.1342 16 7 4.4993 -8.3529 0.9948 17 6 5.1735 -9.1716 1.9140 18 6 4.9856 -9.0128 3.2777 19 7 5.6359 -9.8075 4.1169 20 6 6.4637 -10.7368 3.6712 21 8 7.1122 -11.5246 4.5637 22 7 6.6728 -10.9230 2.3781 23 6 6.0541 -10.1698 1.4756 24 7 6.2757 -10.3686 0.1199 25 6 4.9157 -6.9511 1.1341 26 6 4.2984 -6.1234 0.0013 27 1 -0.4850 0.8400 0.0004 28 1 3.1245 -3.7313 0.8905 29 1 3.1245 -3.7314 -0.8895 30 1 2.5806 -8.1996 -0.9534 31 1 1.2718 -7.7322 0.1643 32 1 2.7728 -9.5472 1.0805 33 1 2.7294 -8.0850 2.0950 34 1 4.3144 -8.2541 3.6524 35 1 7.9681 -11.1753 4.8474 36 1 6.8868 -11.0619 -0.1750 37 1 5.8202 -9.8140 -0.5326 38 1 4.5754 -6.5643 2.0947 39 1 6.0026 -6.8875 1.0805 40 1 4.7164 -6.4407 -0.9540 41 1 4.5091 -5.0663 0.1634 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001138275786.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:22 Heat of formation + Delta-G solvation = 4.267778 kcal Electronic energy + Delta-G solvation = -26511.444737 eV Core-core repulsion = 22553.932544 eV Total energy + Delta-G solvation = -3957.512193 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.67516 -40.04057 -38.48575 -37.36968 -35.69958 -34.76972 -32.47217 -32.46026 -31.78107 -30.12105 -28.91899 -26.61882 -25.51455 -24.45657 -23.91955 -23.42174 -21.50682 -19.71738 -19.20107 -18.73774 -17.90736 -17.44054 -17.03382 -16.20423 -16.12023 -15.96641 -15.70548 -15.49835 -15.41782 -14.83640 -14.50458 -14.33984 -14.01415 -13.97008 -13.33231 -13.26003 -12.79413 -12.52820 -12.41837 -12.29598 -12.15093 -11.96018 -11.67914 -11.58159 -11.28117 -11.07781 -11.06823 -10.79782 -10.22264 -9.97973 -9.85357 -9.44638 -9.09436 -8.92087 -8.66223 -8.54833 -8.27609 -6.54533 -6.24887 -3.96134 0.42053 0.93057 2.52926 2.78988 2.95898 3.13849 3.19456 3.20723 3.25953 3.29296 3.40516 3.53690 3.96724 4.16756 4.40758 4.54434 4.61755 4.70083 4.83321 4.89944 4.93221 5.07788 5.10229 5.18126 5.23347 5.36437 5.46432 5.58015 5.63724 5.69216 5.79594 5.83313 6.04503 6.11210 6.37547 6.50897 6.59072 6.80549 7.01250 7.28694 7.45762 7.55636 7.81295 8.31233 8.46981 9.20228 10.82432 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.021412 B = 0.002221 C = 0.002139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.374882 B =12603.955080 C =13089.114200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.060 6.060 10 C -0.151 4.151 11 C 0.536 3.464 12 O -0.515 6.515 13 N -0.623 5.623 14 C 0.120 3.880 15 C 0.045 3.955 16 N -0.484 5.484 17 C -0.090 4.090 18 C 0.172 3.828 19 N -0.559 5.559 20 C 0.533 3.467 21 O -0.460 6.460 22 N -0.586 5.586 23 C 0.484 3.516 24 N -0.819 5.819 25 C 0.042 3.958 26 C 0.115 3.885 27 H 0.269 0.731 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.072 0.928 31 H 0.100 0.900 32 H 0.087 0.913 33 H 0.048 0.952 34 H 0.167 0.833 35 H 0.412 0.588 36 H 0.406 0.594 37 H 0.423 0.577 38 H 0.049 0.951 39 H 0.088 0.912 40 H 0.076 0.924 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.190 -20.943 1.865 26.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.684 4.684 8 H 0.090 0.910 9 S 0.166 5.834 10 C -0.301 4.301 11 C 0.324 3.676 12 O -0.389 6.389 13 N -0.360 5.360 14 C -0.003 4.003 15 C -0.083 4.083 16 N -0.207 5.207 17 C -0.195 4.195 18 C 0.009 3.991 19 N -0.289 5.289 20 C 0.227 3.773 21 O -0.263 6.263 22 N -0.323 5.323 23 C 0.235 3.765 24 N -0.362 5.362 25 C -0.085 4.085 26 C -0.009 4.009 27 H 0.079 0.921 28 H 0.107 0.893 29 H 0.108 0.892 30 H 0.091 0.909 31 H 0.118 0.882 32 H 0.105 0.895 33 H 0.066 0.934 34 H 0.184 0.816 35 H 0.271 0.729 36 H 0.236 0.764 37 H 0.256 0.744 38 H 0.067 0.933 39 H 0.106 0.894 40 H 0.094 0.906 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 14.359 -22.233 2.056 26.546 hybrid contribution 1.985 2.142 0.001 2.920 sum 16.344 -20.091 2.057 25.981 Atomic orbital electron populations 1.70001 1.05956 1.27618 1.46649 1.24991 0.95029 0.99031 0.94500 0.86228 0.79249 0.81251 0.78796 1.19928 1.20799 1.19936 1.22805 0.94821 0.91611 1.59207 0.90991 1.85429 1.04870 0.96349 1.96706 1.23551 1.06569 0.95356 1.04669 1.20357 0.86188 0.86173 0.74892 1.90701 1.15159 1.85168 1.47840 1.48169 1.06295 1.05773 1.75799 1.21597 1.00044 0.80842 0.97864 1.22654 0.85512 1.01268 0.98850 1.59494 1.06028 1.07085 1.48136 1.19726 1.05408 1.02330 0.91995 1.23298 0.92972 0.93934 0.88897 1.67956 1.12632 1.07682 1.40589 1.19840 0.88764 0.85182 0.83465 1.84720 1.37547 1.45370 1.58684 1.67360 1.31198 1.31184 1.02604 1.18057 0.86106 0.86179 0.86130 1.42279 1.50541 1.41027 1.02369 1.22663 1.00717 0.86372 0.98740 1.21805 0.79997 1.00626 0.98487 0.92089 0.89324 0.89204 0.90945 0.88216 0.89478 0.93395 0.81611 0.72909 0.76430 0.74391 0.93291 0.89408 0.90555 0.88534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.77 13.22 55.49 0.73 -25.04 16 2 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 3 Si 0.92 20.99 29.55 -169.99 -5.02 15.97 16 4 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.54 -14.89 9.50 30.94 0.29 -14.60 16 8 H 0.07 1.88 7.80 -52.49 -0.41 1.47 16 9 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 10 C -0.15 -2.89 4.52 36.01 0.16 -2.73 16 11 C 0.54 9.50 7.73 -10.99 -0.08 9.42 16 12 O -0.51 -11.20 15.31 5.56 0.09 -11.11 16 13 N -0.62 -7.81 3.01 -172.44 -0.52 -8.33 16 14 C 0.12 1.25 6.60 -3.60 -0.02 1.23 16 15 C 0.04 0.38 5.27 -3.70 -0.02 0.36 16 16 N -0.48 -3.67 3.89 -170.29 -0.66 -4.33 16 17 C -0.09 -0.76 4.73 -83.12 -0.39 -1.15 16 18 C 0.17 1.61 10.04 -17.09 -0.17 1.44 16 19 N -0.56 -6.13 10.45 -14.68 -0.15 -6.29 16 20 C 0.53 5.62 8.71 -91.37 -0.80 4.82 16 21 O -0.46 -4.02 13.64 -18.36 -0.25 -4.27 16 22 N -0.59 -5.95 10.49 -13.79 -0.14 -6.10 16 23 C 0.48 4.16 7.85 -154.46 -1.21 2.95 16 24 N -0.82 -4.58 9.06 31.37 0.28 -4.29 16 25 C 0.04 0.33 5.32 -3.68 -0.02 0.31 16 26 C 0.11 1.05 6.51 -3.59 -0.02 1.02 16 27 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 28 H 0.09 1.56 7.66 -51.92 -0.40 1.16 16 29 H 0.09 1.58 8.00 -51.91 -0.42 1.17 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.10 1.23 7.06 -51.93 -0.37 0.86 16 32 H 0.09 0.67 8.09 -51.93 -0.42 0.25 16 33 H 0.05 0.45 7.48 -51.93 -0.39 0.06 16 34 H 0.17 1.35 7.35 -52.49 -0.39 0.97 16 35 H 0.41 1.37 9.06 45.56 0.41 1.79 16 36 H 0.41 1.74 8.95 -40.82 -0.37 1.38 16 37 H 0.42 1.95 8.19 -40.82 -0.33 1.62 16 38 H 0.05 0.42 7.71 -51.93 -0.40 0.02 16 39 H 0.09 0.58 8.09 -51.93 -0.42 0.16 16 40 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.10 0.90 6.02 -51.93 -0.31 0.59 16 LS Contribution 358.85 15.07 5.41 5.41 Total: -1.00 -36.46 358.85 -9.02 -45.48 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -4.18 Total: 1.66 kcal Atomic # 6 Polarization: 7.43 SS G_CDS: -2.38 Total: 5.05 kcal Atomic # 7 Polarization: -53.91 SS G_CDS: -0.46 Total: -54.38 kcal Atomic # 8 Polarization: -15.22 SS G_CDS: -0.17 Total: -15.38 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -36.46 -9.02 -45.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138275786.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.746 kcal (2) G-P(sol) polarization free energy of solvation -36.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds