Wall clock time and date at job start Tue Mar 31 2020 22:23:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86798 * 119.99820 * 2 1 4 4 H 1.48507 * 109.47271 * 239.99713 * 3 2 1 5 5 H 1.48495 * 109.47342 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47225 * 120.00035 * 3 2 1 7 7 C 1.38799 * 120.00184 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00071 * 179.97438 * 7 2 1 9 9 S 1.76201 * 119.99826 * 0.02562 * 7 2 1 10 10 C 1.80998 * 99.99755 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.46985 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00167 * 0.02562 * 11 10 9 13 13 N 1.34776 * 120.00278 * 180.02562 * 11 10 9 14 14 C 1.47080 * 120.88238 * 180.02562 * 13 11 10 15 15 C 1.53248 * 108.51718 * 231.15940 * 14 13 11 16 16 N 1.46891 * 109.34123 * 306.16912 * 15 14 13 17 17 C 1.40341 * 110.99905 * 187.25185 * 16 15 14 18 18 C 1.38578 * 120.83211 * 299.97688 * 17 16 15 19 19 N 1.32616 * 119.17701 * 179.77076 * 18 17 16 20 20 C 1.32197 * 121.00139 * 0.51010 * 19 18 17 21 21 O 1.35556 * 119.08609 * 179.75499 * 20 19 18 22 22 N 1.32301 * 121.82543 * 359.47812 * 20 19 18 23 23 C 1.32835 * 120.70922 * 0.25873 * 22 20 19 24 24 N 1.38803 * 120.53019 * 180.02562 * 23 22 20 25 25 C 1.46903 * 111.26956 * 63.10482 * 16 15 14 26 26 C 1.47077 * 120.88086 * 359.97438 * 13 11 10 27 27 H 0.96999 * 120.00271 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.47453 * 60.00039 * 10 9 7 29 29 H 1.09004 * 109.47550 * 299.99492 * 10 9 7 30 30 H 1.08998 * 109.63193 * 111.45808 * 14 13 11 31 31 H 1.08997 * 109.62958 * 350.86674 * 14 13 11 32 32 H 1.09000 * 109.48672 * 186.20841 * 15 14 13 33 33 H 1.09001 * 109.51332 * 66.14650 * 15 14 13 34 34 H 1.08001 * 120.40947 * 0.04467 * 18 17 16 35 35 H 0.96700 * 114.00289 * 269.73167 * 21 20 19 36 36 H 0.97008 * 119.99359 * 359.97438 * 24 23 22 37 37 H 0.96998 * 120.00639 * 180.02562 * 24 23 22 38 38 H 1.09000 * 109.49143 * 56.85784 * 25 16 15 39 39 H 1.09003 * 109.49310 * 176.92975 * 25 16 15 40 40 H 1.08995 * 109.63439 * 248.55163 * 26 13 11 41 41 H 1.09004 * 109.62840 * 9.13157 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1041 1.6965 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1293 -2.7280 0.0005 10 6 2.5159 -3.8913 0.0005 11 6 1.9874 -5.3027 0.0012 12 8 0.7912 -5.5023 0.0011 13 7 2.8442 -6.3431 0.0018 14 6 2.3496 -7.7282 0.0019 15 6 3.0437 -8.4928 1.1342 16 7 4.4993 -8.3529 0.9948 17 6 5.1735 -9.1716 1.9140 18 6 4.9856 -9.0128 3.2777 19 7 5.6359 -9.8075 4.1169 20 6 6.4637 -10.7368 3.6712 21 8 7.1122 -11.5246 4.5637 22 7 6.6728 -10.9230 2.3781 23 6 6.0541 -10.1698 1.4756 24 7 6.2757 -10.3686 0.1199 25 6 4.9157 -6.9511 1.1341 26 6 4.2984 -6.1234 0.0013 27 1 -0.4850 0.8400 0.0004 28 1 3.1245 -3.7313 0.8905 29 1 3.1245 -3.7314 -0.8895 30 1 2.5806 -8.1996 -0.9534 31 1 1.2718 -7.7322 0.1643 32 1 2.7728 -9.5472 1.0805 33 1 2.7294 -8.0850 2.0950 34 1 4.3144 -8.2541 3.6524 35 1 7.9681 -11.1753 4.8474 36 1 6.8868 -11.0619 -0.1750 37 1 5.8202 -9.8140 -0.5326 38 1 4.5754 -6.5643 2.0947 39 1 6.0026 -6.8875 1.0805 40 1 4.7164 -6.4407 -0.9540 41 1 4.5091 -5.0663 0.1634 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001138275786.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:22 Heat of formation + Delta-G solvation = -28.315815 kcal Electronic energy + Delta-G solvation = -26512.857668 eV Core-core repulsion = 22553.932544 eV Total energy + Delta-G solvation = -3958.925124 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.36074 -41.09881 -39.40452 -38.16930 -36.31804 -35.77630 -34.56996 -33.15838 -32.64141 -31.10201 -30.03650 -27.73815 -27.35765 -25.15600 -24.71627 -24.14794 -22.44074 -20.55003 -20.14737 -19.62432 -19.36263 -18.47107 -17.89164 -17.15322 -16.98793 -16.85998 -16.72034 -16.64205 -16.57652 -16.11024 -15.80795 -15.29944 -15.02632 -14.73441 -14.53245 -14.45451 -14.33166 -13.42968 -13.40659 -13.15964 -13.12357 -13.01834 -12.85666 -12.81347 -12.62497 -12.49061 -12.29348 -12.05769 -11.72085 -11.11530 -10.91817 -10.83309 -10.68993 -10.24453 -9.81426 -9.40940 -9.25510 -8.65582 -8.33117 -6.11203 -0.25722 0.26384 1.26664 1.44825 1.46938 1.56043 1.58690 1.93586 2.06551 2.28928 2.53683 2.56197 2.74322 3.01099 3.26292 3.31962 3.62479 3.81617 3.92071 3.93619 4.07030 4.16842 4.23423 4.29287 4.31581 4.46610 4.51831 4.53290 4.72222 4.75341 4.85795 5.01966 5.07882 5.43011 5.46329 5.50661 5.72418 5.96823 6.20831 6.24583 6.30813 6.53858 6.75914 7.08206 7.14982 7.18925 8.75723 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.021412 B = 0.002221 C = 0.002139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.374882 B =12603.955080 C =13089.114200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.013 3.987 3 Si 0.997 3.003 4 H -0.261 1.261 5 H -0.281 1.281 6 H -0.262 1.262 7 C -0.544 4.544 8 H 0.084 0.916 9 S -0.155 6.155 10 C -0.123 4.123 11 C 0.534 3.466 12 O -0.566 6.566 13 N -0.609 5.609 14 C 0.120 3.880 15 C 0.053 3.947 16 N -0.470 5.470 17 C -0.087 4.087 18 C 0.166 3.834 19 N -0.583 5.583 20 C 0.527 3.473 21 O -0.470 6.470 22 N -0.600 5.600 23 C 0.481 3.519 24 N -0.801 5.801 25 C 0.047 3.953 26 C 0.109 3.891 27 H 0.271 0.729 28 H 0.108 0.892 29 H 0.110 0.890 30 H 0.095 0.905 31 H 0.077 0.923 32 H 0.100 0.900 33 H 0.038 0.962 34 H 0.172 0.828 35 H 0.431 0.569 36 H 0.414 0.586 37 H 0.430 0.570 38 H 0.041 0.959 39 H 0.108 0.892 40 H 0.102 0.898 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.210 -21.433 1.227 28.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.819 3.181 4 H -0.186 1.186 5 H -0.206 1.206 6 H -0.186 1.186 7 C -0.692 4.692 8 H 0.102 0.898 9 S 0.073 5.927 10 C -0.275 4.275 11 C 0.322 3.678 12 O -0.445 6.445 13 N -0.343 5.343 14 C -0.003 4.003 15 C -0.074 4.074 16 N -0.193 5.193 17 C -0.192 4.192 18 C 0.003 3.997 19 N -0.314 5.314 20 C 0.221 3.779 21 O -0.276 6.276 22 N -0.338 5.338 23 C 0.231 3.769 24 N -0.345 5.345 25 C -0.081 4.081 26 C -0.013 4.013 27 H 0.079 0.921 28 H 0.126 0.874 29 H 0.128 0.872 30 H 0.113 0.887 31 H 0.096 0.904 32 H 0.118 0.882 33 H 0.056 0.944 34 H 0.189 0.811 35 H 0.294 0.706 36 H 0.245 0.755 37 H 0.265 0.735 38 H 0.060 0.940 39 H 0.126 0.874 40 H 0.120 0.880 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 17.457 -22.762 1.395 28.719 hybrid contribution 1.147 2.116 0.183 2.414 sum 18.604 -20.645 1.579 27.836 Atomic orbital electron populations 1.70177 1.07992 1.28624 1.48033 1.26122 0.95940 1.03323 0.93816 0.85022 0.77807 0.75757 0.79534 1.18555 1.20626 1.18644 1.23156 0.95340 0.91881 1.58790 0.89765 1.85629 1.10743 0.99348 1.97029 1.23367 1.03335 0.94304 1.06446 1.20116 0.85951 0.86628 0.75083 1.90687 1.17311 1.85741 1.50712 1.48144 1.07355 1.05438 1.73403 1.21730 0.99115 0.79683 0.99764 1.22548 0.85937 1.01549 0.97412 1.59495 1.05227 1.06991 1.47589 1.19627 1.05492 1.02444 0.91635 1.23446 0.92951 0.93913 0.89343 1.67958 1.13549 1.08561 1.41360 1.20004 0.88842 0.85148 0.83896 1.84669 1.38896 1.45575 1.58504 1.67418 1.31914 1.31825 1.02650 1.18217 0.85864 0.85907 0.86916 1.42270 1.50027 1.40880 1.01306 1.22655 1.01738 0.85965 0.97703 1.22110 0.77525 1.01264 1.00393 0.92056 0.87421 0.87212 0.88731 0.90410 0.88156 0.94377 0.81069 0.70593 0.75483 0.73549 0.94043 0.87376 0.88037 0.88419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.44 13.22 21.65 0.29 -55.15 16 2 C 0.01 0.71 5.49 84.86 0.47 1.18 16 3 Si 1.00 42.69 29.55 68.60 2.03 44.71 16 4 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 5 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 6 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16 7 C -0.54 -30.27 9.50 67.95 0.65 -29.62 16 8 H 0.08 4.30 7.80 -2.91 -0.02 4.27 16 9 S -0.15 -8.40 20.57 -56.49 -1.16 -9.56 16 10 C -0.12 -4.64 4.52 71.24 0.32 -4.31 16 11 C 0.53 18.76 7.73 87.66 0.68 19.44 16 12 O -0.57 -25.36 15.31 -3.03 -0.05 -25.41 16 13 N -0.61 -14.15 3.01 -817.86 -2.46 -16.61 16 14 C 0.12 2.30 6.60 86.35 0.57 2.87 16 15 C 0.05 0.79 5.27 86.39 0.45 1.25 16 16 N -0.47 -5.76 3.89 -692.68 -2.69 -8.45 16 17 C -0.09 -1.27 4.73 38.32 0.18 -1.09 16 18 C 0.17 2.87 10.04 84.66 0.85 3.72 16 19 N -0.58 -12.26 10.45 -313.30 -3.28 -15.54 16 20 C 0.53 10.51 8.71 180.61 1.57 12.09 16 21 O -0.47 -7.76 13.64 -88.62 -1.21 -8.97 16 22 N -0.60 -11.15 10.49 -310.44 -3.26 -14.40 16 23 C 0.48 7.11 7.85 133.25 1.05 8.15 16 24 N -0.80 -6.51 9.06 -54.68 -0.50 -7.01 16 25 C 0.05 0.58 5.32 86.39 0.46 1.04 16 26 C 0.11 1.64 6.51 86.36 0.56 2.20 16 27 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 28 H 0.11 3.62 7.66 -2.40 -0.02 3.60 16 29 H 0.11 3.67 8.00 -2.39 -0.02 3.65 16 30 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.08 1.91 7.06 -2.39 -0.02 1.89 16 32 H 0.10 1.30 8.09 -2.39 -0.02 1.28 16 33 H 0.04 0.67 7.48 -2.39 -0.02 0.65 16 34 H 0.17 2.62 7.35 -2.91 -0.02 2.60 16 35 H 0.43 2.43 9.06 -74.06 -0.67 1.76 16 36 H 0.41 2.36 8.95 -92.70 -0.83 1.53 16 37 H 0.43 2.40 8.19 -92.71 -0.76 1.64 16 38 H 0.04 0.61 7.71 -2.39 -0.02 0.59 16 39 H 0.11 1.00 8.09 -2.39 -0.02 0.98 16 40 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.10 1.50 6.02 -2.38 -0.01 1.48 16 Total: -1.00 -81.70 358.85 -5.61 -87.31 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -1.14 Total: 12.18 kcal Atomic # 6 Polarization: 9.09 SS G_CDS: 7.81 Total: 16.90 kcal Atomic # 7 Polarization: -105.28 SS G_CDS: -11.89 Total: -117.17 kcal Atomic # 8 Polarization: -33.12 SS G_CDS: -1.26 Total: -34.38 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.71 kcal Atomic # 16 Polarization: -8.40 SS G_CDS: -1.16 Total: -9.56 kcal Total: -81.70 -5.61 -87.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138275786.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.995 kcal (2) G-P(sol) polarization free energy of solvation -81.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds