Wall clock time and date at job start Tue Mar 31 2020 22:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31255 * 126.68604 * 2 1 4 4 N 1.40106 * 107.17574 * 180.02562 * 3 2 1 5 5 C 1.40156 * 125.56467 * 179.97438 * 4 3 2 6 6 C 1.39285 * 120.48492 * 179.97438 * 5 4 3 7 7 C 1.38501 * 118.35882 * 180.02562 * 6 5 4 8 8 C 1.38271 * 119.23689 * 0.02562 * 7 6 5 9 9 N 1.31872 * 120.90979 * 359.97438 * 8 7 6 10 10 C 1.31808 * 121.79763 * 359.97438 * 9 8 7 11 11 N 1.28716 * 108.87029 * 0.22496 * 4 3 2 12 12 C 1.32056 * 109.41719 * 359.62740 * 11 4 3 13 13 C 1.47741 * 126.04613 * 180.11119 * 12 11 4 14 14 O 1.21594 * 120.00084 * 180.30509 * 13 12 11 15 15 N 1.34780 * 119.99774 * 0.30589 * 13 12 11 16 16 C 1.40533 * 119.99814 * 179.97438 * 15 13 12 17 17 C 1.40666 * 126.08996 * 0.03170 * 16 15 13 18 18 N 1.30900 * 108.39221 * 179.97438 * 17 16 15 19 19 N 1.40066 * 108.41092 * 359.97438 * 18 17 16 20 20 C 1.37318 * 126.06942 * 179.97438 * 19 18 17 21 21 H 1.08001 * 120.00054 * 179.97438 * 20 19 18 22 22 C 1.38986 * 119.99744 * 359.97438 * 20 19 18 23 23 N 1.31294 * 120.00521 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99884 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47466 * 89.99605 * 24 22 20 26 26 H 1.48502 * 109.47395 * 209.99684 * 24 22 20 27 27 H 1.48500 * 109.47311 * 329.99683 * 24 22 20 28 28 C 1.35696 * 126.08298 * 179.71140 * 16 15 13 29 29 H 1.09006 * 109.46955 * 89.97880 * 1 2 3 30 30 H 1.09002 * 109.47038 * 209.97497 * 1 2 3 31 31 H 1.08997 * 109.47260 * 329.98269 * 1 2 3 32 32 H 1.07997 * 120.81708 * 359.74491 * 6 5 4 33 33 H 1.08007 * 120.38313 * 179.97438 * 7 6 5 34 34 H 1.07994 * 119.54961 * 179.97438 * 8 7 6 35 35 H 1.08004 * 119.66939 * 180.02562 * 10 9 8 36 36 H 0.97002 * 119.99927 * 359.97438 * 15 13 12 37 37 H 1.08004 * 125.80161 * 0.02562 * 17 16 15 38 38 H 0.96995 * 120.00440 * 180.02562 * 23 22 20 39 39 H 1.07996 * 126.24550 * 0.03304 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2911 1.0526 0.0000 4 7 3.6117 0.5846 -0.0006 5 6 4.7609 1.3870 -0.0013 6 6 6.0274 0.8074 -0.0013 7 6 7.1328 1.6420 -0.0015 8 6 6.9448 3.0118 -0.0011 9 7 5.7318 3.5291 -0.0011 10 6 4.6535 2.7711 -0.0019 11 7 3.5974 -0.7024 -0.0057 12 6 2.3471 -1.1275 -0.0005 13 6 1.9086 -2.5383 -0.0014 14 8 0.7225 -2.8063 -0.0018 15 7 2.8232 -3.5283 -0.0019 16 6 2.4060 -4.8703 -0.0023 17 6 1.0746 -5.3241 -0.0028 18 7 1.0844 -6.6331 -0.0036 19 7 2.4167 -7.0655 -0.0041 20 6 2.8430 -8.3708 -0.0045 21 1 3.8998 -8.5937 -0.0053 22 6 1.9146 -9.4050 -0.0037 23 7 0.6299 -9.1341 -0.0022 24 14 2.4945 -11.1807 -0.0049 25 1 2.6499 -11.6518 1.3948 26 1 1.4948 -12.0276 -0.7040 27 1 3.7999 -11.2747 -0.7065 28 6 3.2160 -5.9590 -0.0083 29 1 -0.3633 0.0004 -1.0277 30 1 -0.3633 -0.8902 0.5135 31 1 -0.3633 0.8898 0.5141 32 1 6.1446 -0.2661 0.0033 33 1 8.1302 1.2275 -0.0011 34 1 7.8031 3.6672 -0.0008 35 1 3.6764 3.2314 -0.0023 36 1 3.7693 -3.3145 -0.0020 37 1 0.1939 -4.6988 -0.0034 38 1 -0.0181 -9.8559 -0.0013 39 1 4.2959 -5.9514 -0.0131 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001142461122.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:38 Heat of formation + Delta-G solvation = 181.717799 kcal Electronic energy + Delta-G solvation = -27171.587360 eV Core-core repulsion = 23118.618777 eV Total energy + Delta-G solvation = -4052.968583 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.98695 -41.71120 -41.21915 -40.08173 -36.19601 -35.79880 -35.08071 -33.89609 -33.37556 -32.26729 -31.57163 -29.86241 -29.09634 -27.14098 -26.07043 -24.83039 -23.59998 -22.89582 -22.40976 -21.66636 -21.19379 -19.59412 -19.35075 -18.36796 -17.93691 -17.81487 -17.40318 -17.17326 -16.85706 -16.08092 -15.87500 -15.42716 -15.23052 -15.19496 -14.94434 -14.89781 -14.81262 -14.29891 -14.11950 -14.05358 -13.48543 -13.33705 -13.26059 -12.91617 -12.87636 -12.66621 -12.39543 -12.07995 -11.95530 -11.82153 -11.54755 -11.04839 -11.02732 -10.82231 -10.80829 -10.76073 -10.09587 -9.63800 -8.55676 -8.46065 -6.23109 -0.81536 0.01593 0.36695 0.60191 0.64830 1.29852 1.41324 1.58856 1.70730 1.91769 2.00742 2.17990 2.39691 2.57147 2.62592 2.90633 3.10244 3.33369 3.41418 3.49665 3.70294 3.78812 3.89502 4.14819 4.22994 4.44261 4.48042 4.57549 4.60181 4.71080 4.79339 4.91804 4.97281 5.00794 5.05767 5.20113 5.23211 5.29984 5.41371 5.59666 5.95679 6.28110 6.39579 6.64032 6.72807 6.73434 7.17854 7.45641 7.67762 8.53215 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.019727 B = 0.002228 C = 0.002004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.028148 B =12564.610942 C =13968.493157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.108 3.892 3 N -0.287 5.287 4 N -0.158 5.158 5 C 0.077 3.923 6 C -0.073 4.073 7 C -0.134 4.134 8 C 0.102 3.898 9 N -0.483 5.483 10 C 0.113 3.887 11 N -0.200 5.200 12 C -0.055 4.055 13 C 0.592 3.408 14 O -0.542 6.542 15 N -0.599 5.599 16 C -0.048 4.048 17 C -0.050 4.050 18 N -0.308 5.308 19 N -0.166 5.166 20 C -0.353 4.353 21 H 0.141 0.859 22 C -0.006 4.006 23 N -0.822 5.822 24 Si 1.018 2.982 25 H -0.264 1.264 26 H -0.277 1.277 27 H -0.245 1.245 28 C -0.077 4.077 29 H 0.101 0.899 30 H 0.092 0.908 31 H 0.102 0.898 32 H 0.159 0.841 33 H 0.189 0.811 34 H 0.203 0.797 35 H 0.168 0.832 36 H 0.418 0.582 37 H 0.176 0.824 38 H 0.277 0.723 39 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.859 20.487 -0.040 24.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.063 4.063 3 N -0.117 5.117 4 N -0.050 5.050 5 C -0.016 4.016 6 C -0.101 4.101 7 C -0.154 4.154 8 C -0.055 4.055 9 N -0.192 5.192 10 C -0.047 4.047 11 N -0.045 5.045 12 C -0.221 4.221 13 C 0.376 3.624 14 O -0.418 6.418 15 N -0.242 5.242 16 C -0.154 4.154 17 C -0.226 4.226 18 N -0.140 5.140 19 N 0.065 4.935 20 C -0.484 4.484 21 H 0.158 0.842 22 C -0.218 4.218 23 N -0.450 5.450 24 Si 0.837 3.163 25 H -0.189 1.189 26 H -0.202 1.202 27 H -0.168 1.168 28 C -0.228 4.228 29 H 0.119 0.881 30 H 0.110 0.890 31 H 0.121 0.879 32 H 0.177 0.823 33 H 0.206 0.794 34 H 0.219 0.781 35 H 0.185 0.815 36 H 0.255 0.745 37 H 0.192 0.808 38 H 0.087 0.913 39 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 13.028 20.856 -0.045 24.591 hybrid contribution 0.046 -1.348 0.002 1.349 sum 13.074 19.508 -0.043 23.484 Atomic orbital electron populations 1.20519 0.81888 1.05471 1.05326 1.23978 0.99953 0.87620 0.94745 1.77988 0.87148 1.22388 1.24151 1.48171 1.05122 1.00639 1.51096 1.18849 0.82946 0.91097 1.08733 1.21781 0.89421 1.03130 0.95815 1.22557 1.00608 0.93821 0.98372 1.23710 0.95089 0.94565 0.92116 1.67945 0.99401 1.39321 1.12518 1.22675 0.99441 0.87111 0.95476 1.73633 1.22414 0.96135 1.12361 1.22619 0.88752 0.96040 1.14719 1.16701 0.85372 0.82116 0.78176 1.90677 1.17016 1.82484 1.51625 1.42176 1.09904 1.02207 1.69939 1.17256 0.92652 0.83258 1.22229 1.24247 0.97217 0.92542 1.08591 1.78163 0.97905 1.10499 1.27388 1.44842 1.03138 1.05275 1.40216 1.20611 0.95678 0.78115 1.53954 0.84184 1.26864 0.94666 1.06107 0.94169 1.70383 1.02282 1.35218 1.37147 0.84600 0.79035 0.73417 0.79214 1.18928 1.20232 1.16773 1.21957 0.97615 0.85369 1.17825 0.88101 0.88959 0.87925 0.82332 0.79389 0.78076 0.81492 0.74480 0.80755 0.91341 0.79624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.59 9.92 71.24 0.71 -0.89 16 2 C 0.11 2.92 7.34 43.22 0.32 3.24 16 3 N -0.29 -7.54 11.93 -46.73 -0.56 -8.09 16 4 N -0.16 -4.02 4.44 -50.89 -0.23 -4.24 16 5 C 0.08 1.56 6.77 38.20 0.26 1.82 16 6 C -0.07 -1.06 9.73 22.58 0.22 -0.84 16 7 C -0.13 -1.09 10.10 22.34 0.23 -0.86 16 8 C 0.10 0.98 11.18 84.69 0.95 1.93 16 9 N -0.48 -8.01 10.35 -195.34 -2.02 -10.03 16 10 C 0.11 2.13 10.81 84.84 0.92 3.05 16 11 N -0.20 -5.46 11.03 -48.60 -0.54 -5.99 16 12 C -0.06 -1.67 7.09 42.20 0.30 -1.37 16 13 C 0.59 21.38 7.80 86.76 0.68 22.06 16 14 O -0.54 -22.30 12.08 -4.01 -0.05 -22.35 16 15 N -0.60 -21.65 5.46 -306.59 -1.67 -23.32 16 16 C -0.05 -2.18 6.90 37.75 0.26 -1.92 16 17 C -0.05 -2.68 10.85 85.42 0.93 -1.76 16 18 N -0.31 -18.25 10.39 -56.46 -0.59 -18.84 16 19 N -0.17 -9.11 3.74 -190.00 -0.71 -9.82 16 20 C -0.35 -18.42 10.25 84.01 0.86 -17.56 16 21 H 0.14 6.33 7.83 -2.91 -0.02 6.30 16 22 C -0.01 -0.32 5.50 84.95 0.47 0.15 16 23 N -0.82 -46.94 11.81 21.66 0.26 -46.68 16 24 Si 1.02 38.11 29.55 68.60 2.03 40.13 16 25 H -0.26 -9.54 7.11 99.48 0.71 -8.84 16 26 H -0.28 -10.30 7.11 99.48 0.71 -9.60 16 27 H -0.24 -8.29 7.11 99.48 0.71 -7.59 16 28 C -0.08 -3.53 11.49 83.38 0.96 -2.57 16 29 H 0.10 1.96 8.14 -2.38 -0.02 1.94 16 30 H 0.09 2.32 6.58 -2.39 -0.02 2.31 16 31 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.16 2.12 7.76 -2.91 -0.02 2.10 16 33 H 0.19 0.09 8.06 -2.91 -0.02 0.07 16 34 H 0.20 0.39 8.06 -2.91 -0.02 0.37 16 35 H 0.17 3.12 7.68 -2.91 -0.02 3.10 16 36 H 0.42 12.24 8.52 -92.71 -0.79 11.45 16 37 H 0.18 9.13 5.92 -2.91 -0.02 9.11 16 38 H 0.28 14.51 8.31 -92.71 -0.77 13.74 16 39 H 0.19 6.74 8.06 -2.91 -0.02 6.71 16 Total: -1.00 -76.23 350.90 4.31 -71.92 By element: Atomic # 1 Polarization: 32.52 SS G_CDS: 0.35 Total: 32.87 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: 8.04 Total: 4.46 kcal Atomic # 7 Polarization: -120.97 SS G_CDS: -6.06 Total: -127.03 kcal Atomic # 8 Polarization: -22.30 SS G_CDS: -0.05 Total: -22.35 kcal Atomic # 14 Polarization: 38.11 SS G_CDS: 2.03 Total: 40.13 kcal Total: -76.23 4.31 -71.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142461122.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 253.635 kcal (2) G-P(sol) polarization free energy of solvation -76.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 177.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 181.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds