Wall clock time and date at job start Tue Mar 31 2020 22:05:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34228 * 117.00298 * 2 1 4 4 O 1.20830 * 119.99580 * 359.97438 * 3 2 1 5 5 C 1.50698 * 120.00138 * 180.02562 * 3 2 1 6 6 N 1.46498 * 109.52169 * 34.87253 * 5 3 2 7 7 C 1.38407 * 119.99616 * 299.99767 * 6 5 3 8 8 N 1.32746 * 119.44453 * 359.73216 * 7 6 5 9 9 C 1.31463 * 121.74521 * 179.74712 * 8 7 6 10 10 C 1.40792 * 120.38667 * 0.52911 * 9 8 7 11 11 C 1.41201 * 120.56361 * 179.72215 * 10 9 8 12 12 H 1.08001 * 119.99902 * 335.71903 * 11 10 9 13 13 C 1.39865 * 119.99830 * 155.72154 * 11 10 9 14 14 N 1.30896 * 120.00362 * 343.22962 * 13 11 10 15 15 Si 1.86799 * 119.99737 * 163.23134 * 13 11 10 16 16 H 1.48498 * 109.47347 * 60.00104 * 15 13 11 17 17 H 1.48508 * 109.47274 * 179.97438 * 15 13 11 18 18 H 1.48506 * 109.47294 * 299.99818 * 15 13 11 19 19 C 1.41282 * 118.86963 * 359.73554 * 10 9 8 20 20 C 1.36660 * 118.40287 * 0.02562 * 19 10 9 21 21 Cl 1.73601 * 120.26603 * 179.97438 * 20 19 10 22 22 C 1.53115 * 109.51921 * 274.67905 * 5 3 2 23 23 C 1.53037 * 109.27481 * 182.43928 * 22 5 3 24 24 N 1.46846 * 109.52610 * 59.18531 * 23 22 5 25 25 C 1.46850 * 111.19237 * 298.25836 * 24 23 22 26 26 C 1.53034 * 109.52615 * 61.74114 * 25 24 23 27 27 H 1.08993 * 109.47468 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47300 * 300.00736 * 1 2 3 29 29 H 1.08999 * 109.47135 * 60.00017 * 1 2 3 30 30 H 0.97000 * 119.99807 * 120.00261 * 6 5 3 31 31 H 1.07999 * 119.80610 * 180.24258 * 9 8 7 32 32 H 0.97000 * 120.00369 * 179.97438 * 14 13 11 33 33 H 1.08008 * 120.79360 * 180.02562 * 19 10 9 34 34 H 1.08999 * 109.51006 * 302.38243 * 22 5 3 35 35 H 1.09005 * 109.50648 * 62.50323 * 22 5 3 36 36 H 1.09001 * 109.46453 * 299.16349 * 23 22 5 37 37 H 1.09008 * 109.45472 * 179.19102 * 23 22 5 38 38 H 1.00902 * 111.00265 * 62.34924 * 24 23 22 39 39 H 1.09006 * 109.46071 * 301.71927 * 25 24 23 40 40 H 1.09003 * 109.45245 * 181.75141 * 25 24 23 41 41 H 1.08997 * 109.50242 * 180.88270 * 26 25 24 42 42 H 1.08998 * 109.53863 * 60.77913 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 7 4.1142 0.1693 -0.7905 7 6 3.8488 -1.1394 -0.4263 8 7 3.1010 -1.3801 0.6437 9 6 2.8166 -2.6049 1.0275 10 6 3.3138 -3.7096 0.3100 11 6 3.0155 -5.0267 0.7223 12 1 2.7602 -5.2252 1.7528 13 6 3.0508 -6.0743 -0.2038 14 7 3.0320 -5.8148 -1.4866 15 14 3.1248 -7.8438 0.3902 16 1 1.9284 -8.1381 1.2192 17 1 3.1526 -8.7580 -0.7798 18 1 4.3515 -8.0422 1.2033 19 6 4.1164 -3.4778 -0.8294 20 6 4.3779 -2.1853 -1.1882 21 17 5.3590 -1.8449 -2.5793 22 6 4.0840 1.1837 1.4375 23 6 5.6078 1.3254 1.4359 24 7 5.9800 2.6165 0.8437 25 6 5.5346 2.7082 -0.5526 26 6 4.0086 2.6078 -0.6104 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5140 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 4.6629 0.3545 -1.5686 31 1 2.2019 -2.7647 1.9010 32 1 3.0569 -6.5413 -2.1289 33 1 4.5136 -4.3022 -1.4029 34 1 3.6448 1.9834 2.0338 35 1 3.8087 0.2186 1.8630 36 1 6.0471 0.5173 0.8509 37 1 5.9782 1.2753 2.4599 38 1 5.6169 3.3831 1.3901 39 1 5.9743 1.8937 -1.1283 40 1 5.8519 3.6626 -0.9730 41 1 3.6796 2.6602 -1.6482 42 1 3.5676 3.4300 -0.0468 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156539229.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:28 Heat of formation + Delta-G solvation = -38.802528 kcal Electronic energy + Delta-G solvation = -28801.490147 eV Core-core repulsion = 24807.773828 eV Total energy + Delta-G solvation = -3993.716319 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.69864 -38.86387 -38.18069 -35.91085 -35.61724 -34.84686 -33.54647 -31.01280 -30.83199 -30.42088 -28.53393 -27.44881 -25.06963 -24.32274 -22.98442 -22.04326 -21.31132 -21.18968 -19.21510 -17.54536 -17.36854 -17.12859 -16.37784 -16.10024 -15.63886 -15.32152 -14.67529 -14.47316 -14.24831 -14.19570 -13.62368 -13.51552 -13.48491 -12.95442 -12.72053 -12.52521 -12.38216 -12.20010 -12.07398 -11.78210 -11.58743 -11.40807 -11.29668 -11.18796 -11.02870 -10.91107 -10.75851 -10.54614 -10.42645 -10.24936 -10.14957 -9.89651 -9.54213 -8.96070 -8.41638 -8.21996 -8.07740 -7.00794 -6.77155 -4.36911 2.44501 2.56991 2.78764 3.02163 3.03937 3.14483 3.15872 3.25093 3.84638 3.90989 4.33907 4.52035 4.66088 4.88863 4.98242 5.13265 5.35537 5.45522 5.48743 5.51994 5.54114 5.58255 5.69851 5.81334 5.85011 5.92323 5.96980 6.04734 6.24385 6.32921 6.44155 6.60688 6.87925 6.88459 7.00800 7.05182 7.10021 7.38000 7.55700 7.63770 7.93364 8.20872 8.26738 8.33842 8.63391 8.67751 9.49038 10.07970 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.014668 B = 0.004244 C = 0.003831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.494940 B = 6596.594892 C = 7307.762838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.293 6.293 3 C 0.462 3.538 4 O -0.537 6.537 5 C 0.219 3.781 6 N -0.724 5.724 7 C 0.284 3.716 8 N -0.464 5.464 9 C 0.014 3.986 10 C 0.044 3.956 11 C -0.452 4.452 12 H 0.082 0.918 13 C 0.074 3.926 14 N -0.797 5.797 15 Si 0.910 3.090 16 H -0.265 1.265 17 H -0.279 1.279 18 H -0.263 1.263 19 C -0.093 4.093 20 C -0.095 4.095 21 Cl -0.117 7.117 22 C -0.165 4.165 23 C 0.066 3.934 24 N -0.685 5.685 25 C 0.061 3.939 26 C -0.152 4.152 27 H 0.096 0.904 28 H 0.053 0.947 29 H 0.050 0.950 30 H 0.402 0.598 31 H 0.131 0.869 32 H 0.283 0.717 33 H 0.138 0.862 34 H 0.061 0.939 35 H 0.111 0.889 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.337 0.663 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.074 0.926 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.101 9.705 1.465 10.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.204 6.204 3 C 0.305 3.695 4 O -0.427 6.427 5 C 0.129 3.871 6 N -0.367 5.367 7 C 0.052 3.948 8 N -0.179 5.179 9 C -0.146 4.146 10 C 0.039 3.961 11 C -0.482 4.482 12 H 0.100 0.900 13 C -0.143 4.143 14 N -0.422 5.422 15 Si 0.734 3.266 16 H -0.190 1.190 17 H -0.204 1.204 18 H -0.188 1.188 19 C -0.119 4.119 20 C -0.127 4.127 21 Cl -0.089 7.089 22 C -0.205 4.205 23 C -0.064 4.064 24 N -0.313 5.313 25 C -0.069 4.069 26 C -0.191 4.191 27 H 0.115 0.885 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.239 0.761 31 H 0.149 0.851 32 H 0.094 0.906 33 H 0.156 0.844 34 H 0.079 0.921 35 H 0.130 0.870 36 H 0.101 0.899 37 H 0.093 0.907 38 H 0.154 0.846 39 H 0.095 0.905 40 H 0.097 0.903 41 H 0.093 0.907 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.179 10.405 1.544 10.742 hybrid contribution -0.917 -1.398 -0.766 1.839 sum 1.262 9.006 0.778 9.128 Atomic orbital electron populations 1.23201 0.79324 1.03205 1.00990 1.87165 1.20603 1.30975 1.81684 1.24572 0.92388 0.81680 0.70909 1.90584 1.67347 1.37124 1.47668 1.19610 0.85221 0.88236 0.94071 1.43825 1.59419 1.00771 1.32681 1.17245 1.00189 0.83220 0.94106 1.66623 1.13298 1.24771 1.13211 1.22277 1.03506 0.86241 1.02534 1.18296 0.91550 0.94313 0.91953 1.19313 1.41351 0.90971 0.96606 0.90030 1.25884 0.92283 1.01786 0.94392 1.69780 1.35234 1.35214 1.02006 0.86336 0.80029 0.81030 0.79200 1.18993 1.20375 1.18799 1.21266 0.98166 0.93206 0.99310 1.20899 1.04144 0.95157 0.92463 1.98247 1.70946 1.95495 1.44193 1.22684 0.98035 1.05425 0.94362 1.21947 0.92562 0.91791 1.00078 1.60667 1.62855 1.04832 1.02920 1.22016 0.91300 1.02649 0.90936 1.22435 0.98875 0.95484 1.02346 0.88533 0.92799 0.93166 0.76090 0.85131 0.90606 0.84417 0.92065 0.87043 0.89948 0.90696 0.84569 0.90469 0.90302 0.90695 0.89579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.56 101.05 1.07 1.51 16 2 O -0.29 -5.57 6.47 -39.25 -0.25 -5.82 16 3 C 0.46 8.35 6.70 36.00 0.24 8.59 16 4 O -0.54 -10.21 15.80 -18.75 -0.30 -10.51 16 5 C 0.22 3.39 0.63 -132.85 -0.08 3.31 16 6 N -0.72 -12.19 4.22 -48.59 -0.21 -12.40 16 7 C 0.28 5.73 6.41 -155.05 -0.99 4.73 16 8 N -0.46 -9.56 4.42 -11.75 -0.05 -9.62 16 9 C 0.01 0.30 10.97 -16.74 -0.18 0.12 16 10 C 0.04 1.06 5.59 -106.65 -0.60 0.46 16 11 C -0.45 -10.84 9.07 -37.85 -0.34 -11.19 16 12 H 0.08 1.86 7.90 -52.49 -0.41 1.45 16 13 C 0.07 1.73 5.18 -17.34 -0.09 1.64 16 14 N -0.80 -19.31 10.91 55.54 0.61 -18.70 16 15 Si 0.91 17.56 29.59 -169.99 -5.03 12.53 16 16 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 17 H -0.28 -5.32 7.11 56.52 0.40 -4.92 16 18 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 19 C -0.09 -2.19 8.52 -39.00 -0.33 -2.53 16 20 C -0.09 -2.03 6.32 -39.57 -0.25 -2.28 16 21 Cl -0.12 -2.16 27.56 -51.86 -1.43 -3.59 16 22 C -0.16 -2.40 4.69 -26.65 -0.12 -2.52 16 23 C 0.07 0.85 6.41 -3.83 -0.02 0.83 16 24 N -0.68 -7.77 6.87 -113.81 -0.78 -8.55 16 25 C 0.06 0.67 6.39 -3.83 -0.02 0.65 16 26 C -0.15 -1.92 4.49 -26.65 -0.12 -2.04 16 27 H 0.10 1.43 8.14 -51.93 -0.42 1.01 16 28 H 0.05 0.79 8.13 -51.93 -0.42 0.37 16 29 H 0.05 0.76 8.13 -51.93 -0.42 0.34 16 30 H 0.40 6.37 6.08 -40.82 -0.25 6.12 16 31 H 0.13 2.68 8.06 -52.49 -0.42 2.25 16 32 H 0.28 6.34 8.30 -40.82 -0.34 6.00 16 33 H 0.14 3.45 6.20 -52.48 -0.33 3.12 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.11 1.91 5.90 -51.93 -0.31 1.60 16 36 H 0.08 1.25 7.69 -51.93 -0.40 0.85 16 37 H 0.07 0.90 8.14 -51.92 -0.42 0.47 16 38 H 0.34 3.34 8.86 -39.29 -0.35 2.99 16 39 H 0.08 0.91 7.02 -51.93 -0.36 0.55 16 40 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 42 H 0.09 1.08 7.79 -51.93 -0.40 0.68 16 LS Contribution 349.85 15.07 5.27 5.27 Total: -1.00 -25.96 349.85 -9.36 -35.32 By element: Atomic # 1 Polarization: 20.11 SS G_CDS: -5.33 Total: 14.78 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: -1.86 Total: 1.28 kcal Atomic # 7 Polarization: -48.83 SS G_CDS: -0.43 Total: -49.26 kcal Atomic # 8 Polarization: -15.78 SS G_CDS: -0.55 Total: -16.33 kcal Atomic # 14 Polarization: 17.56 SS G_CDS: -5.03 Total: 12.53 kcal Atomic # 17 Polarization: -2.16 SS G_CDS: -1.43 Total: -3.59 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -25.96 -9.36 -35.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156539229.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.483 kcal (2) G-P(sol) polarization free energy of solvation -25.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds