Wall clock time and date at job start Tue Mar 31 2020 22:05:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34228 * 117.00298 * 2 1 4 4 O 1.20830 * 119.99580 * 359.97438 * 3 2 1 5 5 C 1.50698 * 120.00138 * 180.02562 * 3 2 1 6 6 N 1.46498 * 109.52169 * 34.87253 * 5 3 2 7 7 C 1.38407 * 119.99616 * 299.99767 * 6 5 3 8 8 N 1.32746 * 119.44453 * 359.73216 * 7 6 5 9 9 C 1.31463 * 121.74521 * 179.74712 * 8 7 6 10 10 C 1.40792 * 120.38667 * 0.52911 * 9 8 7 11 11 C 1.41201 * 120.56361 * 179.72215 * 10 9 8 12 12 H 1.08001 * 119.99902 * 335.71903 * 11 10 9 13 13 C 1.39865 * 119.99830 * 155.72154 * 11 10 9 14 14 N 1.30896 * 120.00362 * 343.22962 * 13 11 10 15 15 Si 1.86799 * 119.99737 * 163.23134 * 13 11 10 16 16 H 1.48498 * 109.47347 * 60.00104 * 15 13 11 17 17 H 1.48508 * 109.47274 * 179.97438 * 15 13 11 18 18 H 1.48506 * 109.47294 * 299.99818 * 15 13 11 19 19 C 1.41282 * 118.86963 * 359.73554 * 10 9 8 20 20 C 1.36660 * 118.40287 * 0.02562 * 19 10 9 21 21 Cl 1.73601 * 120.26603 * 179.97438 * 20 19 10 22 22 C 1.53115 * 109.51921 * 274.67905 * 5 3 2 23 23 C 1.53037 * 109.27481 * 182.43928 * 22 5 3 24 24 N 1.46846 * 109.52610 * 59.18531 * 23 22 5 25 25 C 1.46850 * 111.19237 * 298.25836 * 24 23 22 26 26 C 1.53034 * 109.52615 * 61.74114 * 25 24 23 27 27 H 1.08993 * 109.47468 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47300 * 300.00736 * 1 2 3 29 29 H 1.08999 * 109.47135 * 60.00017 * 1 2 3 30 30 H 0.97000 * 119.99807 * 120.00261 * 6 5 3 31 31 H 1.07999 * 119.80610 * 180.24258 * 9 8 7 32 32 H 0.97000 * 120.00369 * 179.97438 * 14 13 11 33 33 H 1.08008 * 120.79360 * 180.02562 * 19 10 9 34 34 H 1.08999 * 109.51006 * 302.38243 * 22 5 3 35 35 H 1.09005 * 109.50648 * 62.50323 * 22 5 3 36 36 H 1.09001 * 109.46453 * 299.16349 * 23 22 5 37 37 H 1.09008 * 109.45472 * 179.19102 * 23 22 5 38 38 H 1.00902 * 111.00265 * 62.34924 * 24 23 22 39 39 H 1.09006 * 109.46071 * 301.71927 * 25 24 23 40 40 H 1.09003 * 109.45245 * 181.75141 * 25 24 23 41 41 H 1.08997 * 109.50242 * 180.88270 * 26 25 24 42 42 H 1.08998 * 109.53863 * 60.77913 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 7 4.1142 0.1693 -0.7905 7 6 3.8488 -1.1394 -0.4263 8 7 3.1010 -1.3801 0.6437 9 6 2.8166 -2.6049 1.0275 10 6 3.3138 -3.7096 0.3100 11 6 3.0155 -5.0267 0.7223 12 1 2.7602 -5.2252 1.7528 13 6 3.0508 -6.0743 -0.2038 14 7 3.0320 -5.8148 -1.4866 15 14 3.1248 -7.8438 0.3902 16 1 1.9284 -8.1381 1.2192 17 1 3.1526 -8.7580 -0.7798 18 1 4.3515 -8.0422 1.2033 19 6 4.1164 -3.4778 -0.8294 20 6 4.3779 -2.1853 -1.1882 21 17 5.3590 -1.8449 -2.5793 22 6 4.0840 1.1837 1.4375 23 6 5.6078 1.3254 1.4359 24 7 5.9800 2.6165 0.8437 25 6 5.5346 2.7082 -0.5526 26 6 4.0086 2.6078 -0.6104 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5140 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 4.6629 0.3545 -1.5686 31 1 2.2019 -2.7647 1.9010 32 1 3.0569 -6.5413 -2.1289 33 1 4.5136 -4.3022 -1.4029 34 1 3.6448 1.9834 2.0338 35 1 3.8087 0.2186 1.8630 36 1 6.0471 0.5173 0.8509 37 1 5.9782 1.2753 2.4599 38 1 5.6169 3.3831 1.3901 39 1 5.9743 1.8937 -1.1283 40 1 5.8519 3.6626 -0.9730 41 1 3.6796 2.6602 -1.6482 42 1 3.5676 3.4300 -0.0468 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001156539229.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:27 Heat of formation + Delta-G solvation = -52.668233 kcal Electronic energy + Delta-G solvation = -28802.091409 eV Core-core repulsion = 24807.773828 eV Total energy + Delta-G solvation = -3994.317581 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.04790 -40.40232 -39.52057 -37.34993 -37.22514 -36.33026 -35.07900 -32.37916 -32.26033 -31.81325 -30.11484 -28.73502 -26.71316 -25.55678 -24.07995 -23.68810 -22.95988 -22.39312 -20.51037 -19.26337 -18.78146 -18.59985 -17.67568 -17.56037 -17.11605 -16.80406 -16.13687 -15.88828 -15.55294 -15.35753 -15.02912 -14.93579 -14.83357 -14.40089 -14.14846 -13.78606 -13.61028 -13.54909 -13.48842 -13.23480 -13.12958 -12.87903 -12.78463 -12.63688 -12.45125 -12.22694 -12.01471 -11.98346 -11.76621 -11.62011 -11.55971 -11.46160 -11.14913 -10.55775 -9.94613 -9.78117 -9.35181 -8.69666 -8.44136 -6.15076 0.73588 1.06987 1.17641 1.44445 1.49140 1.53635 1.58965 1.93370 2.24961 2.48597 2.80928 3.39261 3.50947 3.69538 3.75678 3.88595 4.08694 4.13580 4.22350 4.28911 4.34952 4.37096 4.54935 4.56247 4.65717 4.71540 4.85078 4.88647 4.90339 5.08722 5.12881 5.18976 5.21885 5.33651 5.36976 5.50391 5.85976 5.87109 6.04423 6.29756 6.54400 6.56813 6.70441 6.84560 6.90504 6.92938 7.80099 8.37790 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.014668 B = 0.004244 C = 0.003831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.494940 B = 6596.594892 C = 7307.762838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.317 6.317 3 C 0.456 3.544 4 O -0.549 6.549 5 C 0.216 3.784 6 N -0.714 5.714 7 C 0.297 3.703 8 N -0.458 5.458 9 C 0.014 3.986 10 C 0.017 3.983 11 C -0.482 4.482 12 H 0.084 0.916 13 C 0.037 3.963 14 N -0.831 5.831 15 Si 0.976 3.024 16 H -0.260 1.260 17 H -0.275 1.275 18 H -0.262 1.262 19 C -0.109 4.109 20 C -0.107 4.107 21 Cl -0.092 7.092 22 C -0.158 4.158 23 C 0.075 3.925 24 N -0.680 5.680 25 C 0.066 3.934 26 C -0.144 4.144 27 H 0.102 0.898 28 H 0.063 0.937 29 H 0.055 0.945 30 H 0.407 0.593 31 H 0.142 0.858 32 H 0.286 0.714 33 H 0.120 0.880 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.060 0.940 37 H 0.087 0.913 38 H 0.350 0.650 39 H 0.069 0.931 40 H 0.106 0.894 41 H 0.077 0.923 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.683 11.188 1.740 11.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.229 6.229 3 C 0.300 3.700 4 O -0.440 6.440 5 C 0.126 3.874 6 N -0.356 5.356 7 C 0.063 3.937 8 N -0.173 5.173 9 C -0.145 4.145 10 C 0.012 3.988 11 C -0.512 4.512 12 H 0.102 0.898 13 C -0.177 4.177 14 N -0.458 5.458 15 Si 0.798 3.202 16 H -0.184 1.184 17 H -0.200 1.200 18 H -0.186 1.186 19 C -0.136 4.136 20 C -0.140 4.140 21 Cl -0.064 7.064 22 C -0.199 4.199 23 C -0.055 4.055 24 N -0.309 5.309 25 C -0.064 4.064 26 C -0.184 4.184 27 H 0.121 0.879 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.246 0.754 31 H 0.159 0.841 32 H 0.097 0.903 33 H 0.137 0.863 34 H 0.091 0.909 35 H 0.104 0.896 36 H 0.079 0.921 37 H 0.105 0.895 38 H 0.169 0.831 39 H 0.087 0.913 40 H 0.124 0.876 41 H 0.095 0.905 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.766 11.934 1.820 12.385 hybrid contribution -1.110 -1.654 -0.884 2.180 sum 1.655 10.280 0.935 10.454 Atomic orbital electron populations 1.23338 0.77966 1.03925 1.01742 1.87118 1.22229 1.31814 1.81747 1.25050 0.93310 0.81248 0.70430 1.90567 1.67825 1.37285 1.48302 1.19920 0.83719 0.89024 0.94785 1.43825 1.58951 0.99977 1.32863 1.17456 0.98640 0.84350 0.93241 1.66766 1.13267 1.23939 1.13310 1.22469 1.03161 0.86331 1.02539 1.18548 0.92429 0.95073 0.92759 1.19549 1.42922 0.91750 0.97027 0.89787 1.26615 0.91490 1.05345 0.94264 1.69849 1.36550 1.36363 1.03009 0.85326 0.79992 0.76246 0.78647 1.18422 1.19972 1.18634 1.21161 0.99072 0.93654 0.99710 1.20977 1.04647 0.94834 0.93527 1.98242 1.70136 1.95290 1.42737 1.22625 0.99289 1.04414 0.93570 1.21809 0.91026 0.92100 1.00551 1.60642 1.62672 1.04375 1.03229 1.22062 0.89817 1.03833 0.90722 1.22456 1.00088 0.93553 1.02259 0.87922 0.91804 0.92633 0.75374 0.84107 0.90338 0.86269 0.90856 0.89615 0.92130 0.89477 0.83149 0.91272 0.87562 0.90474 0.88943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.76 10.56 113.37 1.20 1.96 16 2 O -0.32 -11.86 6.47 -51.39 -0.33 -12.20 16 3 C 0.46 15.93 6.70 71.24 0.48 16.41 16 4 O -0.55 -20.03 15.80 21.95 0.35 -19.68 16 5 C 0.22 6.32 0.63 2.94 0.00 6.33 16 6 N -0.71 -23.24 4.22 -307.66 -1.30 -24.54 16 7 C 0.30 11.87 6.41 133.32 0.85 12.73 16 8 N -0.46 -18.88 4.42 -191.08 -0.84 -19.72 16 9 C 0.01 0.63 10.97 85.37 0.94 1.57 16 10 C 0.02 0.85 5.59 -21.18 -0.12 0.73 16 11 C -0.48 -23.74 9.07 23.39 0.21 -23.53 16 12 H 0.08 3.93 7.90 -2.91 -0.02 3.90 16 13 C 0.04 1.76 5.18 85.23 0.44 2.20 16 14 N -0.83 -41.40 10.91 21.82 0.24 -41.16 16 15 Si 0.98 36.38 29.59 68.60 2.03 38.41 16 16 H -0.26 -9.37 7.11 99.48 0.71 -8.66 16 17 H -0.27 -9.95 7.11 99.48 0.71 -9.24 16 18 H -0.26 -9.59 7.11 99.48 0.71 -8.89 16 19 C -0.11 -5.30 8.52 22.65 0.19 -5.11 16 20 C -0.11 -4.63 6.32 22.28 0.14 -4.49 16 21 Cl -0.09 -3.36 27.56 -2.72 -0.07 -3.43 16 22 C -0.16 -4.37 4.69 30.64 0.14 -4.22 16 23 C 0.08 1.81 6.41 86.33 0.55 2.36 16 24 N -0.68 -13.38 6.87 -513.98 -3.53 -16.91 16 25 C 0.07 1.24 6.39 86.32 0.55 1.79 16 26 C -0.14 -3.25 4.49 30.65 0.14 -3.12 16 27 H 0.10 3.00 8.14 -2.39 -0.02 2.98 16 28 H 0.06 1.82 8.13 -2.39 -0.02 1.80 16 29 H 0.05 1.64 8.13 -2.39 -0.02 1.62 16 30 H 0.41 12.31 6.08 -92.71 -0.56 11.75 16 31 H 0.14 5.85 8.06 -2.91 -0.02 5.83 16 32 H 0.29 13.15 8.30 -92.71 -0.77 12.38 16 33 H 0.12 6.21 6.20 -2.91 -0.02 6.19 16 34 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.09 2.87 5.90 -2.38 -0.01 2.85 16 36 H 0.06 1.75 7.69 -2.39 -0.02 1.73 16 37 H 0.09 1.90 8.14 -2.38 -0.02 1.88 16 38 H 0.35 5.67 8.86 -89.69 -0.79 4.88 16 39 H 0.07 1.45 7.02 -2.38 -0.02 1.43 16 40 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.09 2.03 7.79 -2.39 -0.02 2.01 16 Total: -1.00 -56.15 349.85 1.98 -54.17 By element: Atomic # 1 Polarization: 39.74 SS G_CDS: -0.28 Total: 39.47 kcal Atomic # 6 Polarization: -0.12 SS G_CDS: 5.72 Total: 5.60 kcal Atomic # 7 Polarization: -96.90 SS G_CDS: -5.43 Total: -102.33 kcal Atomic # 8 Polarization: -31.90 SS G_CDS: 0.01 Total: -31.88 kcal Atomic # 14 Polarization: 36.38 SS G_CDS: 2.03 Total: 38.41 kcal Atomic # 17 Polarization: -3.36 SS G_CDS: -0.07 Total: -3.43 kcal Total: -56.15 1.98 -54.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156539229.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.502 kcal (2) G-P(sol) polarization free energy of solvation -56.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds