Wall clock time and date at job start Tue Mar 31 2020 22:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31009 * 1 3 3 C 1.50694 * 119.99762 * 2 1 4 4 N 1.46500 * 109.47058 * 125.00350 * 3 2 1 5 5 C 1.35173 * 126.42301 * 264.95596 * 4 3 2 6 6 N 1.30421 * 110.12707 * 179.54647 * 5 4 3 7 7 C 1.34630 * 109.80862 * 0.59212 * 6 5 4 8 8 N 1.33673 * 134.42690 * 179.32533 * 7 6 5 9 9 C 1.32098 * 120.46154 * 179.97438 * 8 7 6 10 10 N 1.38776 * 118.84340 * 180.02562 * 9 8 7 11 11 C 1.39020 * 120.00037 * 185.47857 * 10 9 8 12 12 C 1.39916 * 119.96395 * 185.37801 * 11 10 9 13 13 N 1.32149 * 120.32013 * 179.75067 * 12 11 10 14 14 C 1.31923 * 120.26718 * 0.52585 * 13 12 11 15 15 C 1.40700 * 119.92931 * 359.73000 * 14 13 12 16 16 C 1.41274 * 120.16159 * 179.97438 * 15 14 13 17 17 H 1.08002 * 119.99755 * 19.04546 * 16 15 14 18 18 C 1.40046 * 120.00308 * 199.03893 * 16 15 14 19 19 N 1.30736 * 119.99681 * 12.95674 * 18 16 15 20 20 Si 1.86791 * 120.00217 * 192.95611 * 18 16 15 21 21 H 1.48493 * 109.47275 * 90.00017 * 20 18 16 22 22 H 1.48506 * 109.47135 * 210.00220 * 20 18 16 23 23 H 1.48506 * 109.47159 * 330.00130 * 20 18 16 24 24 N 1.32234 * 119.96941 * 5.65514 * 11 10 9 25 25 N 1.32725 * 122.31377 * 0.02562 * 9 8 7 26 26 C 1.32794 * 121.06894 * 359.97438 * 25 9 8 27 27 O 1.35523 * 120.66661 * 179.97438 * 26 25 9 28 28 C 1.38085 * 126.42483 * 84.99701 * 4 3 2 29 29 H 1.08003 * 119.99648 * 180.02562 * 1 2 3 30 30 H 1.07999 * 119.99615 * 0.02562 * 1 2 3 31 31 H 1.07999 * 119.99615 * 179.97438 * 2 1 3 32 32 H 1.09000 * 109.47282 * 4.99836 * 3 2 1 33 33 H 1.09007 * 109.46952 * 244.99936 * 3 2 1 34 34 H 1.07997 * 124.93953 * 0.03483 * 5 4 3 35 35 H 0.97000 * 120.00371 * 5.47041 * 10 9 8 36 36 H 1.07999 * 119.84295 * 0.02562 * 12 11 10 37 37 H 1.07998 * 120.03490 * 179.75940 * 14 13 12 38 38 H 0.97002 * 120.00086 * 179.97438 * 19 18 16 39 39 H 0.96697 * 113.99746 * 89.99905 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.7641 1.8775 2.3466 6 7 3.8042 1.7133 3.1161 7 6 4.7724 1.0643 2.4423 8 7 6.0113 0.6611 2.7412 9 6 6.7440 0.0267 1.8435 10 7 8.0256 -0.3773 2.1899 11 6 8.8585 -0.9440 1.2320 12 6 10.1071 -1.4537 1.6049 13 7 10.9024 -1.9984 0.7009 14 6 10.5301 -2.0569 -0.5634 15 6 9.2791 -1.5429 -0.9513 16 6 8.8758 -1.6026 -2.3039 17 1 9.3565 -2.2934 -2.9808 18 6 7.8525 -0.7662 -2.7671 19 7 7.4449 0.2360 -2.0331 20 14 7.0700 -1.0823 -4.4335 21 1 5.9108 -1.9959 -4.2707 22 1 6.6089 0.2036 -5.0159 23 1 8.0684 -1.7059 -5.3389 24 7 8.4724 -0.9960 -0.0317 25 7 6.2974 -0.2378 0.6220 26 6 5.0782 0.1280 0.2438 27 8 4.6307 -0.1458 -1.0058 28 6 4.2701 0.8052 1.1561 29 1 -0.5400 -0.9354 0.0004 30 1 -0.5399 0.9353 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3586 2.1316 0.0895 33 1 2.6213 1.4026 -0.9314 34 1 1.8491 2.3702 2.6404 35 1 8.3404 -0.2642 3.1004 36 1 10.4205 -1.4058 2.6373 37 1 11.1847 -2.4994 -1.2997 38 1 6.7364 0.8156 -2.3540 39 1 4.1809 -0.9982 -1.0844 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163495906.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:52 Heat of formation + Delta-G solvation = 171.575006 kcal Electronic energy + Delta-G solvation = -29236.176822 eV Core-core repulsion = 25182.768414 eV Total energy + Delta-G solvation = -4053.408408 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.39521 -39.60237 -38.71152 -37.48213 -35.91679 -34.68747 -33.85503 -32.81281 -31.75342 -31.39252 -29.84407 -28.54012 -26.65044 -25.92383 -24.07022 -23.46896 -21.98618 -21.57160 -20.93090 -20.36862 -18.88454 -18.43414 -17.62434 -17.28183 -16.36070 -16.25098 -15.71795 -15.37870 -15.23161 -15.11686 -14.92912 -14.53751 -14.32698 -14.17010 -14.05618 -13.61711 -13.03089 -12.81887 -12.52623 -11.85732 -11.81802 -11.57150 -11.44472 -11.29696 -10.88299 -10.74670 -10.65819 -10.54539 -10.38836 -10.22961 -9.91737 -9.66217 -9.34804 -8.91619 -8.81821 -8.45556 -8.09157 -7.23900 -6.91177 -6.55504 -4.56191 0.99421 1.51295 1.63340 2.63360 2.65028 2.86847 3.05467 3.06925 3.09050 3.13094 3.22536 3.74066 3.91622 4.19586 4.32491 4.39744 4.45601 4.54210 4.74843 4.82857 4.92464 5.03433 5.18111 5.40602 5.71342 5.83214 5.96030 5.99948 6.04098 6.09697 6.18065 6.29107 6.41555 6.73073 6.97021 7.01279 7.10350 7.30741 7.52480 7.59155 7.78454 7.86114 7.89407 8.20550 8.53193 8.74639 8.90513 9.32444 9.90239 10.22272 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.011291 B = 0.004925 C = 0.003590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2479.293144 B = 5683.415493 C = 7797.142806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.176 4.176 3 C 0.137 3.863 4 N -0.462 5.462 5 C 0.286 3.714 6 N -0.499 5.499 7 C 0.330 3.670 8 N -0.553 5.553 9 C 0.582 3.418 10 N -0.613 5.613 11 C 0.341 3.659 12 C -0.146 4.146 13 N -0.407 5.407 14 C -0.094 4.094 15 C 0.240 3.760 16 C -0.418 4.418 17 H 0.089 0.911 18 C 0.078 3.922 19 N -0.682 5.682 20 Si 0.906 3.094 21 H -0.269 1.269 22 H -0.280 1.280 23 H -0.264 1.264 24 N -0.448 5.448 25 N -0.437 5.437 26 C 0.424 3.576 27 O -0.466 6.466 28 C -0.131 4.131 29 H 0.104 0.896 30 H 0.101 0.899 31 H 0.113 0.887 32 H 0.099 0.901 33 H 0.108 0.892 34 H 0.218 0.782 35 H 0.424 0.576 36 H 0.125 0.875 37 H 0.133 0.867 38 H 0.279 0.721 39 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.915 2.627 1.126 17.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.195 4.195 3 C 0.016 3.984 4 N -0.153 5.153 5 C -0.003 4.003 6 N -0.222 5.222 7 C 0.080 3.920 8 N -0.282 5.282 9 C 0.222 3.778 10 N -0.245 5.245 11 C 0.097 3.903 12 C -0.308 4.308 13 N -0.118 5.118 14 C -0.265 4.265 15 C 0.114 3.886 16 C -0.450 4.450 17 H 0.107 0.893 18 C -0.152 4.152 19 N -0.301 5.301 20 Si 0.731 3.269 21 H -0.195 1.195 22 H -0.205 1.205 23 H -0.188 1.188 24 N -0.170 5.170 25 N -0.163 5.163 26 C 0.221 3.779 27 O -0.272 6.272 28 C -0.247 4.247 29 H 0.122 0.878 30 H 0.120 0.880 31 H 0.131 0.869 32 H 0.117 0.883 33 H 0.126 0.874 34 H 0.234 0.766 35 H 0.262 0.738 36 H 0.142 0.858 37 H 0.150 0.850 38 H 0.091 0.909 39 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -15.826 3.313 1.878 16.278 hybrid contribution -1.524 -0.373 -1.390 2.096 sum -17.351 2.941 0.488 17.605 Atomic orbital electron populations 1.23936 0.95455 1.02534 0.98441 1.23162 0.96279 0.98373 1.01654 1.20995 0.91584 0.96722 0.89120 1.44954 1.11478 1.45879 1.12948 1.25352 0.98987 0.95684 0.80264 1.69999 0.99724 1.21616 1.30864 1.18798 0.90441 0.95823 0.86920 1.66884 1.04994 1.19622 1.36661 1.18882 0.87132 0.88056 0.83723 1.41469 1.08548 1.62148 1.12334 1.19368 0.88149 0.92745 0.89992 1.21799 0.94312 1.15752 0.98918 1.67601 1.32095 1.09849 1.02293 1.23091 0.97956 1.12793 0.92618 1.19169 0.87887 0.88171 0.93409 1.19486 1.15097 1.17453 0.92940 0.89317 1.25896 0.96061 0.94448 0.98780 1.69842 1.18406 1.08018 1.33834 0.86356 0.80006 0.78507 0.82039 1.19468 1.20505 1.18829 1.69135 1.31421 1.20022 0.96457 1.68490 1.10180 1.23055 1.14596 1.18265 0.86037 0.90371 0.83272 1.84757 1.76321 1.41381 1.24713 1.20740 0.89402 1.13316 1.01205 0.87759 0.88050 0.86901 0.88291 0.87388 0.76573 0.73770 0.85756 0.84983 0.90935 0.74764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.93 14.32 29.01 0.42 -0.52 16 2 C -0.18 -1.30 9.85 -36.03 -0.35 -1.65 16 3 C 0.14 1.11 6.32 -5.20 -0.03 1.07 16 4 N -0.46 -5.55 2.77 -117.07 -0.32 -5.87 16 5 C 0.29 3.27 12.46 -90.32 -1.13 2.15 16 6 N -0.50 -8.22 11.23 -13.89 -0.16 -8.37 16 7 C 0.33 6.31 8.42 -157.50 -1.33 4.98 16 8 N -0.55 -11.54 10.51 -13.65 -0.14 -11.69 16 9 C 0.58 12.71 8.37 -322.48 -2.70 10.01 16 10 N -0.61 -12.93 5.54 -13.06 -0.07 -13.00 16 11 C 0.34 8.21 7.43 -154.85 -1.15 7.06 16 12 C -0.15 -3.42 11.09 -16.79 -0.19 -3.60 16 13 N -0.41 -10.10 10.47 -12.12 -0.13 -10.23 16 14 C -0.09 -2.37 10.97 -16.58 -0.18 -2.55 16 15 C 0.24 6.36 6.38 -84.83 -0.54 5.82 16 16 C -0.42 -10.54 9.13 -37.75 -0.34 -10.89 16 17 H 0.09 2.09 7.88 -52.49 -0.41 1.67 16 18 C 0.08 1.85 5.39 -17.34 -0.09 1.75 16 19 N -0.68 -16.94 10.91 55.55 0.61 -16.34 16 20 Si 0.91 17.67 29.58 -169.99 -5.03 12.64 16 21 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 22 H -0.28 -5.43 7.11 56.52 0.40 -5.03 16 23 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 24 N -0.45 -11.78 5.91 -10.10 -0.06 -11.84 16 25 N -0.44 -9.70 6.92 -13.91 -0.10 -9.79 16 26 C 0.42 7.89 7.86 -16.69 -0.13 7.76 16 27 O -0.47 -7.44 12.19 -18.26 -0.22 -7.66 16 28 C -0.13 -2.20 6.92 -83.76 -0.58 -2.78 16 29 H 0.10 0.53 8.06 -52.48 -0.42 0.11 16 30 H 0.10 0.41 7.84 -52.49 -0.41 -0.01 16 31 H 0.11 0.94 8.06 -52.49 -0.42 0.52 16 32 H 0.10 0.49 7.78 -51.93 -0.40 0.09 16 33 H 0.11 0.98 7.45 -51.93 -0.39 0.59 16 34 H 0.22 1.24 8.06 -52.49 -0.42 0.82 16 35 H 0.42 7.54 8.82 -40.82 -0.36 7.18 16 36 H 0.12 2.50 8.06 -52.49 -0.42 2.08 16 37 H 0.13 3.03 8.06 -52.49 -0.42 2.61 16 38 H 0.28 6.57 8.12 -40.82 -0.33 6.24 16 39 H 0.39 4.63 9.06 45.56 0.41 5.04 16 LS Contribution 349.51 15.07 5.27 5.27 Total: -1.00 -34.32 349.51 -11.49 -45.81 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: -2.80 Total: 12.46 kcal Atomic # 6 Polarization: 26.94 SS G_CDS: -8.33 Total: 18.61 kcal Atomic # 7 Polarization: -86.76 SS G_CDS: -0.37 Total: -87.13 kcal Atomic # 8 Polarization: -7.44 SS G_CDS: -0.22 Total: -7.66 kcal Atomic # 14 Polarization: 17.67 SS G_CDS: -5.03 Total: 12.64 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -34.32 -11.49 -45.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163495906.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 217.386 kcal (2) G-P(sol) polarization free energy of solvation -34.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 183.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 171.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds