Wall clock time and date at job start Tue Mar 31 2020 22:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31009 * 1 3 3 C 1.50694 * 119.99762 * 2 1 4 4 N 1.46500 * 109.47058 * 125.00350 * 3 2 1 5 5 C 1.35173 * 126.42301 * 264.95596 * 4 3 2 6 6 N 1.30421 * 110.12707 * 179.54647 * 5 4 3 7 7 C 1.34630 * 109.80862 * 0.59212 * 6 5 4 8 8 N 1.33673 * 134.42690 * 179.32533 * 7 6 5 9 9 C 1.32098 * 120.46154 * 179.97438 * 8 7 6 10 10 N 1.38776 * 118.84340 * 180.02562 * 9 8 7 11 11 C 1.39020 * 120.00037 * 185.47857 * 10 9 8 12 12 C 1.39916 * 119.96395 * 185.37801 * 11 10 9 13 13 N 1.32149 * 120.32013 * 179.75067 * 12 11 10 14 14 C 1.31923 * 120.26718 * 0.52585 * 13 12 11 15 15 C 1.40700 * 119.92931 * 359.73000 * 14 13 12 16 16 C 1.41274 * 120.16159 * 179.97438 * 15 14 13 17 17 H 1.08002 * 119.99755 * 19.04546 * 16 15 14 18 18 C 1.40046 * 120.00308 * 199.03893 * 16 15 14 19 19 N 1.30736 * 119.99681 * 12.95674 * 18 16 15 20 20 Si 1.86791 * 120.00217 * 192.95611 * 18 16 15 21 21 H 1.48493 * 109.47275 * 90.00017 * 20 18 16 22 22 H 1.48506 * 109.47135 * 210.00220 * 20 18 16 23 23 H 1.48506 * 109.47159 * 330.00130 * 20 18 16 24 24 N 1.32234 * 119.96941 * 5.65514 * 11 10 9 25 25 N 1.32725 * 122.31377 * 0.02562 * 9 8 7 26 26 C 1.32794 * 121.06894 * 359.97438 * 25 9 8 27 27 O 1.35523 * 120.66661 * 179.97438 * 26 25 9 28 28 C 1.38085 * 126.42483 * 84.99701 * 4 3 2 29 29 H 1.08003 * 119.99648 * 180.02562 * 1 2 3 30 30 H 1.07999 * 119.99615 * 0.02562 * 1 2 3 31 31 H 1.07999 * 119.99615 * 179.97438 * 2 1 3 32 32 H 1.09000 * 109.47282 * 4.99836 * 3 2 1 33 33 H 1.09007 * 109.46952 * 244.99936 * 3 2 1 34 34 H 1.07997 * 124.93953 * 0.03483 * 5 4 3 35 35 H 0.97000 * 120.00371 * 5.47041 * 10 9 8 36 36 H 1.07999 * 119.84295 * 0.02562 * 12 11 10 37 37 H 1.07998 * 120.03490 * 179.75940 * 14 13 12 38 38 H 0.97002 * 120.00086 * 179.97438 * 19 18 16 39 39 H 0.96697 * 113.99746 * 89.99905 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.7641 1.8775 2.3466 6 7 3.8042 1.7133 3.1161 7 6 4.7724 1.0643 2.4423 8 7 6.0113 0.6611 2.7412 9 6 6.7440 0.0267 1.8435 10 7 8.0256 -0.3773 2.1899 11 6 8.8585 -0.9440 1.2320 12 6 10.1071 -1.4537 1.6049 13 7 10.9024 -1.9984 0.7009 14 6 10.5301 -2.0569 -0.5634 15 6 9.2791 -1.5429 -0.9513 16 6 8.8758 -1.6026 -2.3039 17 1 9.3565 -2.2934 -2.9808 18 6 7.8525 -0.7662 -2.7671 19 7 7.4449 0.2360 -2.0331 20 14 7.0700 -1.0823 -4.4335 21 1 5.9108 -1.9959 -4.2707 22 1 6.6089 0.2036 -5.0159 23 1 8.0684 -1.7059 -5.3389 24 7 8.4724 -0.9960 -0.0317 25 7 6.2974 -0.2378 0.6220 26 6 5.0782 0.1280 0.2438 27 8 4.6307 -0.1458 -1.0058 28 6 4.2701 0.8052 1.1561 29 1 -0.5400 -0.9354 0.0004 30 1 -0.5399 0.9353 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3586 2.1316 0.0895 33 1 2.6213 1.4026 -0.9314 34 1 1.8491 2.3702 2.6404 35 1 8.3404 -0.2642 3.1004 36 1 10.4205 -1.4058 2.6373 37 1 11.1847 -2.4994 -1.2997 38 1 6.7364 0.8156 -2.3540 39 1 4.1809 -0.9982 -1.0844 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163495906.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:51 Heat of formation + Delta-G solvation = 149.581111 kcal Electronic energy + Delta-G solvation = -29237.130549 eV Core-core repulsion = 25182.768414 eV Total energy + Delta-G solvation = -4054.362135 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.118 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.60055 -41.18625 -40.31739 -38.81766 -36.93205 -36.07925 -35.66490 -33.96337 -33.36123 -32.80364 -31.45152 -30.03484 -27.85291 -27.34613 -25.44131 -25.01593 -23.76282 -23.09628 -22.10018 -21.02774 -20.35098 -19.76523 -19.12578 -18.68926 -17.86399 -17.52602 -17.17910 -16.96282 -16.59540 -16.50384 -16.29481 -16.06698 -15.51320 -15.32926 -15.28503 -14.73322 -14.69256 -14.11422 -13.36962 -13.31575 -13.23346 -13.09927 -12.89932 -12.55153 -12.51682 -12.20003 -12.13986 -12.00469 -11.77474 -11.61132 -11.33428 -11.15141 -10.56079 -10.48445 -10.21575 -9.95744 -9.65595 -9.06967 -8.58264 -8.34596 -6.46465 -0.30887 0.12578 0.88133 1.01520 1.25596 1.45997 1.51511 1.56588 1.58800 1.72732 1.89334 2.27819 2.43434 2.85490 2.95463 3.06427 3.37806 3.55179 3.74890 3.87545 3.93252 4.01008 4.18538 4.23907 4.34959 4.40425 4.58382 4.66144 4.89878 4.95150 5.00311 5.03693 5.18872 5.24943 5.58715 5.62744 5.67533 5.85759 6.04769 6.10624 6.19487 6.39647 6.49519 6.68066 6.72503 6.87928 7.35001 7.48955 8.04368 8.43912 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.011291 B = 0.004925 C = 0.003590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2479.293144 B = 5683.415493 C = 7797.142806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.201 4.201 3 C 0.136 3.864 4 N -0.453 5.453 5 C 0.317 3.683 6 N -0.537 5.537 7 C 0.302 3.698 8 N -0.568 5.568 9 C 0.562 3.438 10 N -0.609 5.609 11 C 0.335 3.665 12 C -0.151 4.151 13 N -0.416 5.416 14 C -0.118 4.118 15 C 0.211 3.789 16 C -0.441 4.441 17 H 0.096 0.904 18 C 0.039 3.961 19 N -0.705 5.705 20 Si 0.981 3.019 21 H -0.261 1.261 22 H -0.276 1.276 23 H -0.260 1.260 24 N -0.466 5.466 25 N -0.479 5.479 26 C 0.421 3.579 27 O -0.466 6.466 28 C -0.127 4.127 29 H 0.108 0.892 30 H 0.127 0.873 31 H 0.093 0.907 32 H 0.143 0.857 33 H 0.095 0.905 34 H 0.281 0.719 35 H 0.434 0.566 36 H 0.155 0.845 37 H 0.144 0.856 38 H 0.280 0.720 39 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.691 3.724 0.425 21.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.220 4.220 3 C 0.016 3.984 4 N -0.142 5.142 5 C 0.029 3.971 6 N -0.262 5.262 7 C 0.052 3.948 8 N -0.297 5.297 9 C 0.202 3.798 10 N -0.243 5.243 11 C 0.091 3.909 12 C -0.313 4.313 13 N -0.127 5.127 14 C -0.287 4.287 15 C 0.085 3.915 16 C -0.472 4.472 17 H 0.114 0.886 18 C -0.188 4.188 19 N -0.324 5.324 20 Si 0.802 3.198 21 H -0.185 1.185 22 H -0.201 1.201 23 H -0.184 1.184 24 N -0.189 5.189 25 N -0.206 5.206 26 C 0.219 3.781 27 O -0.274 6.274 28 C -0.244 4.244 29 H 0.126 0.874 30 H 0.145 0.855 31 H 0.111 0.889 32 H 0.161 0.839 33 H 0.113 0.887 34 H 0.297 0.703 35 H 0.275 0.725 36 H 0.173 0.827 37 H 0.162 0.838 38 H 0.091 0.909 39 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -19.667 4.408 1.160 20.188 hybrid contribution -0.625 -0.621 -1.101 1.410 sum -20.292 3.787 0.059 20.642 Atomic orbital electron populations 1.24182 0.94663 1.04006 0.94904 1.22978 0.96894 0.97311 1.04852 1.21328 0.91232 0.98738 0.87080 1.45305 1.10088 1.44427 1.14368 1.26591 0.99087 0.92561 0.78819 1.70013 1.00573 1.23121 1.32495 1.19221 0.90547 0.96585 0.88457 1.66811 1.06234 1.19891 1.36721 1.18915 0.87421 0.89289 0.84219 1.41304 1.08534 1.62197 1.12277 1.19616 0.88815 0.92484 0.90007 1.22275 0.94062 1.14966 1.00046 1.67616 1.32497 1.10183 1.02411 1.23270 0.98244 1.13989 0.93214 1.19589 0.88581 0.88965 0.94378 1.19833 1.16273 1.18163 0.92908 0.88552 1.26689 0.95979 0.93736 1.02392 1.69956 1.18453 1.08540 1.35433 0.85228 0.79082 0.78446 0.77042 1.18538 1.20070 1.18379 1.69187 1.31854 1.20619 0.97232 1.68364 1.12256 1.24842 1.15186 1.18331 0.85623 0.90229 0.83881 1.84712 1.76369 1.42587 1.23721 1.20561 0.91299 1.12704 0.99806 0.87354 0.85461 0.88887 0.83875 0.88665 0.70345 0.72534 0.82733 0.83826 0.90879 0.72933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 14.32 67.77 0.97 0.00 16 2 C -0.20 -2.38 9.85 25.64 0.25 -2.13 16 3 C 0.14 1.70 6.32 85.63 0.54 2.24 16 4 N -0.45 -9.63 2.77 -524.30 -1.45 -11.09 16 5 C 0.32 6.05 12.46 180.24 2.25 8.29 16 6 N -0.54 -16.84 11.23 -197.85 -2.22 -19.06 16 7 C 0.30 11.56 8.42 134.44 1.13 12.69 16 8 N -0.57 -24.45 10.51 -197.08 -2.07 -26.52 16 9 C 0.56 25.54 8.37 261.37 2.19 27.73 16 10 N -0.61 -26.76 5.54 -195.22 -1.08 -27.84 16 11 C 0.34 16.73 7.43 133.30 0.99 17.72 16 12 C -0.15 -7.21 11.09 85.05 0.94 -6.27 16 13 N -0.42 -21.10 10.47 -192.25 -2.01 -23.11 16 14 C -0.12 -6.14 10.97 85.28 0.94 -5.20 16 15 C 0.21 11.59 6.38 40.16 0.26 11.85 16 16 C -0.44 -22.77 9.13 23.46 0.21 -22.56 16 17 H 0.10 4.63 7.88 -2.91 -0.02 4.60 16 18 C 0.04 1.89 5.39 85.29 0.46 2.35 16 19 N -0.71 -35.72 10.91 21.84 0.24 -35.48 16 20 Si 0.98 36.09 29.58 68.60 2.03 38.12 16 21 H -0.26 -9.15 7.11 99.48 0.71 -8.44 16 22 H -0.28 -9.87 7.11 99.48 0.71 -9.17 16 23 H -0.26 -9.31 7.11 99.48 0.71 -8.61 16 24 N -0.47 -25.44 5.91 -185.88 -1.10 -26.54 16 25 N -0.48 -22.05 6.92 -310.59 -2.15 -24.20 16 26 C 0.42 15.96 7.86 84.83 0.67 16.62 16 27 O -0.47 -14.94 12.19 -88.27 -1.08 -16.01 16 28 C -0.13 -4.20 6.92 38.99 0.27 -3.93 16 29 H 0.11 0.70 8.06 -2.91 -0.02 0.68 16 30 H 0.13 0.25 7.84 -2.91 -0.02 0.23 16 31 H 0.09 1.46 8.06 -2.91 -0.02 1.43 16 32 H 0.14 0.56 7.78 -2.39 -0.02 0.54 16 33 H 0.10 1.49 7.45 -2.38 -0.02 1.48 16 34 H 0.28 1.34 8.06 -2.91 -0.02 1.31 16 35 H 0.43 16.10 8.82 -92.71 -0.82 15.28 16 36 H 0.16 6.20 8.06 -2.91 -0.02 6.18 16 37 H 0.14 6.83 8.06 -2.91 -0.02 6.81 16 38 H 0.28 13.36 8.12 -92.71 -0.75 12.61 16 39 H 0.41 9.69 9.06 -74.06 -0.67 9.02 16 Total: -1.00 -79.21 349.51 0.85 -78.36 By element: Atomic # 1 Polarization: 34.29 SS G_CDS: -0.32 Total: 33.97 kcal Atomic # 6 Polarization: 47.34 SS G_CDS: 12.07 Total: 59.40 kcal Atomic # 7 Polarization: -181.99 SS G_CDS: -11.85 Total: -193.84 kcal Atomic # 8 Polarization: -14.94 SS G_CDS: -1.08 Total: -16.01 kcal Atomic # 14 Polarization: 36.09 SS G_CDS: 2.03 Total: 38.12 kcal Total: -79.21 0.85 -78.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163495906.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 227.938 kcal (2) G-P(sol) polarization free energy of solvation -79.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 148.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 149.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds