Wall clock time and date at job start Tue Mar 31 2020 22:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34680 * 116.99891 * 2 1 4 4 O 1.21446 * 120.00157 * 0.02562 * 3 2 1 5 5 C 1.47989 * 120.00236 * 180.02562 * 3 2 1 6 6 C 1.39638 * 120.89433 * 359.97438 * 5 3 2 7 7 C 1.39010 * 118.94068 * 179.97438 * 6 5 3 8 8 N 1.39105 * 119.61930 * 179.97438 * 7 6 5 9 9 C 1.46959 * 110.99871 * 180.02562 * 8 7 6 10 10 C 1.53058 * 109.36419 * 183.19202 * 9 8 7 11 11 N 1.46955 * 109.36051 * 301.59955 * 10 9 8 12 12 C 1.46906 * 110.99744 * 183.18754 * 11 10 9 13 13 C 1.50703 * 109.47109 * 169.99905 * 12 11 10 14 14 H 1.08005 * 119.99876 * 0.02562 * 13 12 11 15 15 C 1.37875 * 119.99989 * 180.02562 * 13 12 11 16 16 N 1.31518 * 119.99944 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99979 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47418 * 89.99710 * 17 15 13 19 19 H 1.48498 * 109.47091 * 209.99770 * 17 15 13 20 20 H 1.48498 * 109.46997 * 329.99580 * 17 15 13 21 21 C 1.46959 * 110.88319 * 59.32174 * 11 10 9 22 22 C 1.46959 * 111.00304 * 303.80467 * 8 7 6 23 23 N 1.32345 * 120.75845 * 0.26105 * 7 6 5 24 24 C 1.31853 * 121.98139 * 359.47361 * 23 7 6 25 25 C 1.38161 * 120.98388 * 0.52599 * 24 23 7 26 26 Cl 1.73598 * 120.43822 * 179.72522 * 25 24 23 27 27 H 1.08997 * 109.46700 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46992 * 300.00198 * 1 2 3 29 29 H 1.08998 * 109.47138 * 59.99750 * 1 2 3 30 30 H 1.08001 * 120.53061 * 0.02562 * 6 5 3 31 31 H 1.08995 * 109.48972 * 63.22377 * 9 8 7 32 32 H 1.08998 * 109.48999 * 303.15777 * 9 8 7 33 33 H 1.08994 * 109.48935 * 181.63483 * 10 9 8 34 34 H 1.08999 * 109.48934 * 61.56553 * 10 9 8 35 35 H 1.08992 * 109.47459 * 289.99824 * 12 11 10 36 36 H 1.09004 * 109.47040 * 49.99975 * 12 11 10 37 37 H 0.96997 * 119.99752 * 180.02562 * 16 15 13 38 38 H 1.08995 * 109.48972 * 60.64434 * 21 11 10 39 39 H 1.08998 * 109.48999 * 180.71033 * 21 11 10 40 40 H 1.08999 * 109.48803 * 296.77744 * 22 8 7 41 41 H 1.09000 * 109.48812 * 56.82380 * 22 8 7 42 42 H 1.08001 * 119.50878 * 180.27269 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0634 1.2000 0.0000 4 8 1.4020 2.2186 0.0005 5 6 3.5413 1.2776 -0.0006 6 6 4.3200 0.1185 -0.0006 7 6 5.7049 0.2386 -0.0017 8 7 6.4944 -0.9067 -0.0012 9 6 7.9229 -0.5617 -0.0019 10 6 8.7546 -1.8441 -0.0817 11 7 8.4255 -2.7101 1.0591 12 6 9.2591 -3.9196 1.0595 13 6 9.0726 -4.6578 2.3601 14 1 8.4015 -4.2676 3.1110 15 6 9.7586 -5.8312 2.5913 16 7 10.5755 -6.3065 1.6767 17 14 9.5268 -6.7465 4.2031 18 1 8.4111 -7.7168 4.0654 19 1 10.7760 -7.4737 4.5434 20 1 9.2092 -5.7767 5.2818 21 6 6.9969 -3.0551 1.0598 22 6 6.1656 -1.7725 1.1399 23 7 6.2810 1.4301 0.0025 24 6 5.5781 2.5457 -0.0025 25 6 4.1968 2.5160 -0.0014 26 17 3.2853 3.9935 -0.0009 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 3.8539 -0.8557 -0.0006 31 1 8.1680 -0.0257 0.9150 32 1 8.1441 0.0694 -0.8626 33 1 9.8147 -1.5923 -0.0531 34 1 8.5295 -2.3663 -1.0116 35 1 8.9653 -4.5638 0.2309 36 1 10.3065 -3.6391 0.9480 37 1 11.0578 -7.1322 1.8393 38 1 6.7518 -3.5910 0.1429 39 1 6.7757 -3.6861 1.9205 40 1 6.3911 -1.2501 2.0696 41 1 5.1054 -2.0240 1.1119 42 1 6.0897 3.4968 -0.0033 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165055842.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:22 Heat of formation + Delta-G solvation = -17.879691 kcal Electronic energy + Delta-G solvation = -26718.677087 eV Core-core repulsion = 22725.868050 eV Total energy + Delta-G solvation = -3992.809037 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.34214 -40.37688 -38.57429 -37.01517 -36.60719 -35.21554 -33.31536 -32.61170 -30.70006 -30.44298 -28.34131 -27.68065 -25.61319 -24.96467 -23.64844 -22.62529 -21.82807 -21.11574 -19.51151 -18.59518 -17.73381 -16.80699 -16.77507 -16.65670 -16.37354 -16.10482 -15.25858 -14.96261 -14.62256 -14.42467 -14.24071 -14.05962 -13.86093 -13.74147 -13.52343 -13.19881 -12.93557 -12.43717 -12.24779 -12.10063 -11.87189 -11.73028 -11.31190 -11.17416 -11.03598 -10.88779 -10.86886 -10.74546 -10.56483 -10.49487 -10.31723 -9.94220 -9.81418 -9.78445 -9.22872 -8.48603 -8.22112 -7.34977 -6.07255 -4.09246 0.08915 0.60285 1.74291 2.15283 2.17156 3.15744 3.28524 3.35383 3.39091 3.47235 3.97909 4.26306 4.37879 4.40640 4.47535 4.74655 4.80863 4.83139 4.98019 5.08553 5.19125 5.22483 5.28559 5.32793 5.35983 5.54970 5.63659 5.72286 5.77972 5.86461 5.89462 6.09519 6.32480 6.44899 6.49567 6.64356 6.96819 7.21690 7.27770 7.28155 7.54589 7.73095 8.00355 8.10824 8.46450 8.97924 9.55395 11.03548 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.017678 B = 0.002461 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.500316 B =11373.787940 C =12402.891366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.350 6.350 3 C 0.507 3.493 4 O -0.476 6.476 5 C -0.051 4.051 6 C -0.122 4.122 7 C 0.323 3.677 8 N -0.473 5.473 9 C 0.071 3.929 10 C 0.051 3.949 11 N -0.539 5.539 12 C 0.194 3.806 13 C -0.510 4.510 14 H 0.063 0.937 15 C 0.056 3.944 16 N -0.897 5.897 17 Si 0.897 3.103 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.273 1.273 21 C 0.066 3.934 22 C 0.060 3.940 23 N -0.484 5.484 24 C 0.143 3.857 25 C -0.081 4.081 26 Cl -0.027 7.027 27 H 0.106 0.894 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.160 0.840 31 H 0.061 0.939 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.032 0.968 35 H -0.007 1.007 36 H 0.032 0.968 37 H 0.262 0.738 38 H 0.034 0.966 39 H 0.096 0.904 40 H 0.057 0.943 41 H 0.082 0.918 42 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.938 16.349 -4.998 24.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.267 6.267 3 C 0.349 3.651 4 O -0.363 6.363 5 C -0.061 4.061 6 C -0.146 4.146 7 C 0.090 3.910 8 N -0.190 5.190 9 C -0.055 4.055 10 C -0.078 4.078 11 N -0.264 5.264 12 C 0.069 3.931 13 C -0.548 4.548 14 H 0.081 0.919 15 C -0.145 4.145 16 N -0.537 5.537 17 Si 0.725 3.275 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.198 1.198 21 C -0.063 4.063 22 C -0.065 4.065 23 N -0.199 5.199 24 C -0.016 4.016 25 C -0.112 4.112 26 Cl 0.002 6.998 27 H 0.124 0.876 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.178 0.822 31 H 0.079 0.921 32 H 0.102 0.898 33 H 0.098 0.902 34 H 0.051 0.949 35 H 0.011 0.989 36 H 0.050 0.950 37 H 0.071 0.929 38 H 0.052 0.948 39 H 0.114 0.886 40 H 0.075 0.925 41 H 0.100 0.900 42 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -16.174 16.557 -5.006 23.681 hybrid contribution -1.191 -0.557 0.540 1.421 sum -17.365 16.000 -4.466 24.031 Atomic orbital electron populations 1.23343 0.75268 1.04158 1.02788 1.86546 1.24026 1.32001 1.84080 1.20846 0.88335 0.82031 0.73874 1.90925 1.66250 1.35442 1.43639 1.19067 0.90411 0.92839 1.03782 1.21944 0.92613 0.99262 1.00753 1.20061 0.90144 0.88905 0.91884 1.59346 1.07036 1.11567 1.41017 1.22170 0.83301 0.97492 1.02571 1.22181 0.99073 0.93103 0.93402 1.62329 1.03673 1.20766 1.39666 1.19714 0.92232 0.84411 0.96728 1.21137 1.25862 1.06276 1.01562 0.91879 1.24988 0.95196 0.97385 0.96980 1.69955 1.28108 1.21571 1.34050 0.86506 0.77500 0.79763 0.83708 1.20715 1.21249 1.19766 1.22039 0.88678 0.93593 1.01993 1.22564 1.00323 0.94200 0.89457 1.67718 1.40015 0.97710 1.14423 1.22603 0.87920 0.97314 0.93790 1.21958 0.93644 0.88110 1.07450 1.98410 1.73723 1.31249 1.96391 0.87603 0.91591 0.91615 0.82196 0.92093 0.89830 0.90213 0.94946 0.98906 0.95025 0.92862 0.94761 0.88611 0.92462 0.89971 0.80887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.25 10.56 101.05 1.07 1.31 16 2 O -0.35 -3.40 9.92 -40.44 -0.40 -3.80 16 3 C 0.51 5.72 7.92 34.73 0.27 6.00 16 4 O -0.48 -6.07 13.94 -19.22 -0.27 -6.34 16 5 C -0.05 -0.58 5.91 -104.67 -0.62 -1.20 16 6 C -0.12 -1.37 8.80 -38.77 -0.34 -1.71 16 7 C 0.32 4.13 6.41 -155.01 -0.99 3.13 16 8 N -0.47 -6.67 4.74 -173.06 -0.82 -7.49 16 9 C 0.07 1.05 4.78 -3.76 -0.02 1.03 16 10 C 0.05 0.89 5.61 -3.76 -0.02 0.87 16 11 N -0.54 -11.01 4.70 -235.91 -1.11 -12.12 16 12 C 0.19 4.86 4.72 -4.97 -0.02 4.83 16 13 C -0.51 -13.77 8.47 -34.44 -0.29 -14.06 16 14 H 0.06 1.67 7.13 -52.48 -0.37 1.30 16 15 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 16 N -0.90 -26.09 13.29 55.43 0.74 -25.35 16 17 Si 0.90 21.05 29.54 -169.99 -5.02 16.02 16 18 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 19 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 21 C 0.07 1.17 5.43 -3.77 -0.02 1.15 16 22 C 0.06 0.85 5.37 -3.77 -0.02 0.83 16 23 N -0.48 -6.03 8.67 -12.45 -0.11 -6.14 16 24 C 0.14 1.48 10.97 -17.57 -0.19 1.29 16 25 C -0.08 -0.88 6.38 -38.90 -0.25 -1.13 16 26 Cl -0.03 -0.29 26.22 -51.86 -1.36 -1.65 16 27 H 0.11 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.16 1.59 6.82 -52.49 -0.36 1.23 16 31 H 0.06 0.95 8.05 -51.93 -0.42 0.53 16 32 H 0.08 1.15 7.83 -51.93 -0.41 0.74 16 33 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 34 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 35 H -0.01 -0.19 8.12 -51.93 -0.42 -0.61 16 36 H 0.03 0.85 8.03 -51.93 -0.42 0.43 16 37 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 38 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.10 1.81 6.79 -51.93 -0.35 1.46 16 40 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.08 0.95 6.78 -51.93 -0.35 0.60 16 42 H 0.17 1.31 8.06 -52.49 -0.42 0.88 16 LS Contribution 361.93 15.07 5.45 5.45 Total: -1.00 -30.71 361.93 -10.05 -40.76 By element: Atomic # 1 Polarization: 2.45 SS G_CDS: -5.61 Total: -3.16 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: -1.54 Total: 3.80 kcal Atomic # 7 Polarization: -49.79 SS G_CDS: -1.30 Total: -51.09 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: -0.67 Total: -10.14 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 17 Polarization: -0.29 SS G_CDS: -1.36 Total: -1.65 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.71 -10.05 -40.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165055842.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.880 kcal (2) G-P(sol) polarization free energy of solvation -30.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds