Wall clock time and date at job start Tue Mar 31 2020 22:05:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34680 * 116.99891 * 2 1 4 4 O 1.21446 * 120.00157 * 0.02562 * 3 2 1 5 5 C 1.47989 * 120.00236 * 180.02562 * 3 2 1 6 6 C 1.39638 * 120.89433 * 359.97438 * 5 3 2 7 7 C 1.39010 * 118.94068 * 179.97438 * 6 5 3 8 8 N 1.39105 * 119.61930 * 179.97438 * 7 6 5 9 9 C 1.46959 * 110.99871 * 180.02562 * 8 7 6 10 10 C 1.53058 * 109.36419 * 183.19202 * 9 8 7 11 11 N 1.46955 * 109.36051 * 301.59955 * 10 9 8 12 12 C 1.46906 * 110.99744 * 183.18754 * 11 10 9 13 13 C 1.50703 * 109.47109 * 169.99905 * 12 11 10 14 14 H 1.08005 * 119.99876 * 0.02562 * 13 12 11 15 15 C 1.37875 * 119.99989 * 180.02562 * 13 12 11 16 16 N 1.31518 * 119.99944 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99979 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47418 * 89.99710 * 17 15 13 19 19 H 1.48498 * 109.47091 * 209.99770 * 17 15 13 20 20 H 1.48498 * 109.46997 * 329.99580 * 17 15 13 21 21 C 1.46959 * 110.88319 * 59.32174 * 11 10 9 22 22 C 1.46959 * 111.00304 * 303.80467 * 8 7 6 23 23 N 1.32345 * 120.75845 * 0.26105 * 7 6 5 24 24 C 1.31853 * 121.98139 * 359.47361 * 23 7 6 25 25 C 1.38161 * 120.98388 * 0.52599 * 24 23 7 26 26 Cl 1.73598 * 120.43822 * 179.72522 * 25 24 23 27 27 H 1.08997 * 109.46700 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46992 * 300.00198 * 1 2 3 29 29 H 1.08998 * 109.47138 * 59.99750 * 1 2 3 30 30 H 1.08001 * 120.53061 * 0.02562 * 6 5 3 31 31 H 1.08995 * 109.48972 * 63.22377 * 9 8 7 32 32 H 1.08998 * 109.48999 * 303.15777 * 9 8 7 33 33 H 1.08994 * 109.48935 * 181.63483 * 10 9 8 34 34 H 1.08999 * 109.48934 * 61.56553 * 10 9 8 35 35 H 1.08992 * 109.47459 * 289.99824 * 12 11 10 36 36 H 1.09004 * 109.47040 * 49.99975 * 12 11 10 37 37 H 0.96997 * 119.99752 * 180.02562 * 16 15 13 38 38 H 1.08995 * 109.48972 * 60.64434 * 21 11 10 39 39 H 1.08998 * 109.48999 * 180.71033 * 21 11 10 40 40 H 1.08999 * 109.48803 * 296.77744 * 22 8 7 41 41 H 1.09000 * 109.48812 * 56.82380 * 22 8 7 42 42 H 1.08001 * 119.50878 * 180.27269 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0634 1.2000 0.0000 4 8 1.4020 2.2186 0.0005 5 6 3.5413 1.2776 -0.0006 6 6 4.3200 0.1185 -0.0006 7 6 5.7049 0.2386 -0.0017 8 7 6.4944 -0.9067 -0.0012 9 6 7.9229 -0.5617 -0.0019 10 6 8.7546 -1.8441 -0.0817 11 7 8.4255 -2.7101 1.0591 12 6 9.2591 -3.9196 1.0595 13 6 9.0726 -4.6578 2.3601 14 1 8.4015 -4.2676 3.1110 15 6 9.7586 -5.8312 2.5913 16 7 10.5755 -6.3065 1.6767 17 14 9.5268 -6.7465 4.2031 18 1 8.4111 -7.7168 4.0654 19 1 10.7760 -7.4737 4.5434 20 1 9.2092 -5.7767 5.2818 21 6 6.9969 -3.0551 1.0598 22 6 6.1656 -1.7725 1.1399 23 7 6.2810 1.4301 0.0025 24 6 5.5781 2.5457 -0.0025 25 6 4.1968 2.5160 -0.0014 26 17 3.2853 3.9935 -0.0009 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 3.8539 -0.8557 -0.0006 31 1 8.1680 -0.0257 0.9150 32 1 8.1441 0.0694 -0.8626 33 1 9.8147 -1.5923 -0.0531 34 1 8.5295 -2.3663 -1.0116 35 1 8.9653 -4.5638 0.2309 36 1 10.3065 -3.6391 0.9480 37 1 11.0578 -7.1322 1.8393 38 1 6.7518 -3.5910 0.1429 39 1 6.7757 -3.6861 1.9205 40 1 6.3911 -1.2501 2.0696 41 1 5.1054 -2.0240 1.1119 42 1 6.0897 3.4968 -0.0033 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165055842.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:21 Heat of formation + Delta-G solvation = -37.236629 kcal Electronic energy + Delta-G solvation = -26719.516467 eV Core-core repulsion = 22725.868050 eV Total energy + Delta-G solvation = -3993.648417 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.24859 -41.26738 -39.77992 -37.91031 -37.43676 -36.61734 -34.58796 -34.19775 -32.00836 -31.60064 -29.39462 -28.89012 -26.93912 -26.14001 -24.78154 -23.75935 -23.45474 -22.16094 -20.82386 -19.51599 -18.62974 -18.41805 -17.75398 -17.55618 -17.53423 -17.08986 -16.61921 -16.23220 -15.90138 -15.77141 -15.44390 -15.29380 -15.16739 -14.77881 -14.55542 -14.22109 -13.98883 -13.80811 -13.45722 -13.18313 -13.00829 -12.95165 -12.73006 -12.60206 -12.52396 -12.32543 -12.16928 -12.11023 -11.85137 -11.65989 -11.61168 -11.24253 -11.17846 -10.89999 -10.68748 -10.59445 -9.22852 -9.04705 -8.18698 -6.28807 -0.78815 -0.26503 0.89433 1.29801 1.43375 1.43736 1.45018 1.56352 2.20211 2.42117 2.52215 3.12771 3.14190 3.26236 3.45897 3.51785 3.61228 3.87347 4.09642 4.10351 4.27048 4.30038 4.31973 4.34699 4.40345 4.42468 4.52721 4.63050 4.73620 4.80304 4.89994 4.95222 4.98225 5.08261 5.14445 5.22156 5.27044 5.52245 5.66093 5.90924 6.05582 6.31003 6.47888 6.59214 6.63210 6.87137 7.41170 8.92514 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.017678 B = 0.002461 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.500316 B =11373.787940 C =12402.891366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.353 6.353 3 C 0.508 3.492 4 O -0.496 6.496 5 C -0.057 4.057 6 C -0.114 4.114 7 C 0.309 3.691 8 N -0.479 5.479 9 C 0.086 3.914 10 C 0.052 3.948 11 N -0.546 5.546 12 C 0.209 3.791 13 C -0.522 4.522 14 H 0.066 0.934 15 C 0.002 3.998 16 N -0.935 5.935 17 Si 0.968 3.032 18 H -0.272 1.272 19 H -0.285 1.285 20 H -0.264 1.264 21 C 0.067 3.933 22 C 0.072 3.928 23 N -0.496 5.496 24 C 0.147 3.853 25 C -0.079 4.079 26 Cl -0.024 7.024 27 H 0.133 0.867 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.174 0.826 31 H 0.055 0.945 32 H 0.097 0.903 33 H 0.078 0.922 34 H 0.026 0.974 35 H -0.036 1.036 36 H 0.004 0.996 37 H 0.264 0.736 38 H 0.027 0.973 39 H 0.082 0.918 40 H 0.053 0.947 41 H 0.114 0.886 42 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.736 17.222 -4.274 25.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.269 6.269 3 C 0.352 3.648 4 O -0.383 6.383 5 C -0.067 4.067 6 C -0.137 4.137 7 C 0.078 3.922 8 N -0.196 5.196 9 C -0.041 4.041 10 C -0.076 4.076 11 N -0.271 5.271 12 C 0.083 3.917 13 C -0.560 4.560 14 H 0.084 0.916 15 C -0.196 4.196 16 N -0.576 5.576 17 Si 0.793 3.207 18 H -0.197 1.197 19 H -0.211 1.211 20 H -0.188 1.188 21 C -0.062 4.062 22 C -0.054 4.054 23 N -0.211 5.211 24 C -0.012 4.012 25 C -0.110 4.110 26 Cl 0.005 6.995 27 H 0.151 0.849 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.191 0.809 31 H 0.073 0.927 32 H 0.115 0.885 33 H 0.096 0.904 34 H 0.044 0.956 35 H -0.019 1.019 36 H 0.022 0.978 37 H 0.073 0.927 38 H 0.045 0.955 39 H 0.101 0.899 40 H 0.071 0.929 41 H 0.132 0.868 42 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -18.003 17.451 -4.288 25.437 hybrid contribution -0.708 -0.742 0.260 1.058 sum -18.711 16.709 -4.029 25.407 Atomic orbital electron populations 1.23649 0.73513 1.06084 1.02987 1.86538 1.25748 1.31062 1.83559 1.20854 0.88299 0.82258 0.73437 1.90916 1.66603 1.36110 1.44720 1.19184 0.90680 0.93037 1.03826 1.21975 0.91855 0.99869 1.00002 1.19999 0.90447 0.88578 0.93209 1.59325 1.06568 1.12535 1.41181 1.21957 0.83649 0.95617 1.02836 1.22221 0.99781 0.93701 0.91930 1.62242 1.04712 1.18805 1.41371 1.19346 0.91538 0.85656 0.95142 1.21458 1.25726 1.06665 1.02161 0.91575 1.25906 0.94768 0.98351 1.00606 1.70089 1.29135 1.22145 1.36213 0.85393 0.77560 0.78469 0.79269 1.19702 1.21079 1.18820 1.22020 0.87527 0.95644 1.00969 1.22432 1.01156 0.92258 0.89532 1.67694 1.40673 0.98090 1.14682 1.22995 0.87797 0.97682 0.92716 1.22104 0.93981 0.88200 1.06728 1.98416 1.73722 1.31032 1.96304 0.84864 0.91433 0.91427 0.80888 0.92695 0.88473 0.90398 0.95558 1.01861 0.97764 0.92728 0.95505 0.89949 0.92851 0.86834 0.78221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.56 113.37 1.20 1.53 16 2 O -0.35 -6.10 9.92 -55.90 -0.55 -6.65 16 3 C 0.51 10.57 7.92 70.41 0.56 11.13 16 4 O -0.50 -11.89 13.94 20.01 0.28 -11.61 16 5 C -0.06 -1.18 5.91 -19.90 -0.12 -1.30 16 6 C -0.11 -2.30 8.80 22.79 0.20 -2.10 16 7 C 0.31 7.29 6.41 133.01 0.85 8.14 16 8 N -0.48 -12.79 4.74 -701.43 -3.32 -16.11 16 9 C 0.09 2.47 4.78 86.31 0.41 2.88 16 10 C 0.05 1.83 5.61 86.31 0.48 2.32 16 11 N -0.55 -22.77 4.70 -900.27 -4.23 -27.00 16 12 C 0.21 10.92 4.72 85.56 0.40 11.32 16 13 C -0.52 -28.70 8.47 25.60 0.22 -28.48 16 14 H 0.07 3.52 7.13 -2.91 -0.02 3.50 16 15 C 0.00 0.09 5.46 84.65 0.46 0.56 16 16 N -0.94 -55.58 13.29 21.45 0.28 -55.29 16 17 Si 0.97 43.21 29.54 68.60 2.03 45.24 16 18 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 19 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 20 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 21 C 0.07 2.39 5.43 86.31 0.47 2.86 16 22 C 0.07 1.93 5.37 86.31 0.46 2.39 16 23 N -0.50 -11.34 8.67 -193.29 -1.68 -13.02 16 24 C 0.15 2.71 10.97 84.67 0.93 3.64 16 25 C -0.08 -1.57 6.38 22.71 0.14 -1.42 16 26 Cl -0.02 -0.47 26.22 -2.72 -0.07 -0.54 16 27 H 0.13 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.17 2.95 6.82 -2.91 -0.02 2.93 16 31 H 0.05 1.65 8.05 -2.39 -0.02 1.63 16 32 H 0.10 2.53 7.83 -2.39 -0.02 2.51 16 33 H 0.08 2.71 8.07 -2.39 -0.02 2.69 16 34 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 35 H -0.04 -2.07 8.12 -2.39 -0.02 -2.08 16 36 H 0.00 0.24 8.03 -2.38 -0.02 0.22 16 37 H 0.26 14.77 8.31 -92.71 -0.77 13.99 16 38 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.08 3.13 6.79 -2.39 -0.02 3.12 16 40 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.11 2.34 6.78 -2.39 -0.02 2.33 16 42 H 0.20 2.45 8.06 -2.91 -0.02 2.43 16 Total: -1.00 -66.66 361.93 0.45 -66.21 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: 1.04 Total: 5.33 kcal Atomic # 6 Polarization: 6.77 SS G_CDS: 6.68 Total: 13.45 kcal Atomic # 7 Polarization: -102.47 SS G_CDS: -8.94 Total: -111.42 kcal Atomic # 8 Polarization: -17.99 SS G_CDS: -0.28 Total: -18.26 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Atomic # 17 Polarization: -0.47 SS G_CDS: -0.07 Total: -0.54 kcal Total: -66.66 0.45 -66.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165055842.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.971 kcal (2) G-P(sol) polarization free energy of solvation -66.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds