Wall clock time and date at job start Tue Mar 31 2020 22:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34701 * 116.99748 * 2 1 4 4 O 1.21447 * 120.00262 * 359.97438 * 3 2 1 5 5 C 1.47948 * 119.99503 * 179.97438 * 3 2 1 6 6 N 1.32962 * 119.70222 * 0.27121 * 5 3 2 7 7 C 1.31991 * 121.54092 * 180.28649 * 6 5 3 8 8 N 1.39025 * 119.61477 * 179.71845 * 7 6 5 9 9 C 1.46959 * 110.99883 * 359.72343 * 8 7 6 10 10 C 1.53058 * 109.36419 * 183.19252 * 9 8 7 11 11 N 1.46955 * 109.36051 * 301.59955 * 10 9 8 12 12 C 1.46906 * 110.99744 * 183.18754 * 11 10 9 13 13 C 1.50703 * 109.47109 * 169.99905 * 12 11 10 14 14 H 1.08005 * 119.99876 * 0.02562 * 13 12 11 15 15 C 1.37875 * 119.99989 * 180.02562 * 13 12 11 16 16 N 1.31518 * 119.99944 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99979 * 180.02562 * 15 13 12 18 18 H 1.48493 * 109.47285 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.47233 * 119.99722 * 17 15 13 20 20 H 1.48500 * 109.46790 * 239.99650 * 17 15 13 21 21 C 1.46959 * 110.88319 * 59.32174 * 11 10 9 22 22 C 1.46959 * 111.00337 * 123.52556 * 8 7 6 23 23 C 1.39554 * 120.76856 * 359.43629 * 7 6 5 24 24 C 1.38194 * 119.32216 * 0.27941 * 23 7 6 25 25 C 1.38996 * 118.56976 * 359.97438 * 24 23 7 26 26 Cl 1.73603 * 120.39991 * 180.02562 * 25 24 23 27 27 H 1.08998 * 109.47793 * 300.00102 * 1 2 3 28 28 H 1.09007 * 109.46797 * 60.00372 * 1 2 3 29 29 H 1.09000 * 109.47190 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.48972 * 63.22427 * 9 8 7 31 31 H 1.08993 * 109.50763 * 303.17136 * 9 8 7 32 32 H 1.08994 * 109.48935 * 181.63483 * 10 9 8 33 33 H 1.08999 * 109.48934 * 61.56553 * 10 9 8 34 34 H 1.08992 * 109.47459 * 289.99824 * 12 11 10 35 35 H 1.09004 * 109.47040 * 49.99975 * 12 11 10 36 36 H 0.96997 * 119.99752 * 180.02562 * 16 15 13 37 37 H 1.08995 * 109.48972 * 60.64434 * 21 11 10 38 38 H 1.08998 * 109.48999 * 180.71033 * 21 11 10 39 39 H 1.08999 * 109.48803 * 296.77705 * 22 8 7 40 40 H 1.09000 * 109.48812 * 56.82341 * 22 8 7 41 41 H 1.07999 * 120.33394 * 180.30062 * 23 7 6 42 42 H 1.07993 * 120.71090 * 179.97438 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0634 1.2002 0.0000 4 8 1.4020 2.2188 -0.0005 5 6 3.5409 1.2776 0.0006 6 7 4.2592 0.1587 -0.0044 7 6 5.5788 0.1854 0.0016 8 7 6.2901 -1.0091 0.0020 9 6 5.3807 -2.1636 0.0019 10 6 6.1992 -3.4544 0.0827 11 7 7.1248 -3.5165 -1.0570 12 6 7.8765 -4.7788 -1.0565 13 6 8.6266 -4.9173 -2.3562 14 1 8.5527 -4.1447 -3.1073 15 6 9.4071 -6.0302 -2.5864 16 7 9.4975 -6.9707 -1.6716 17 14 10.3374 -6.2016 -4.1972 18 1 10.0709 -5.0165 -5.0513 19 1 11.7934 -6.2953 -3.9204 20 1 9.8872 -7.4295 -4.9006 21 6 8.0342 -2.3621 -1.0569 22 6 7.2158 -1.0714 -1.1378 23 6 6.2684 1.3986 0.0015 24 6 5.5553 2.5824 0.0011 25 6 4.1666 2.5218 0.0001 26 17 3.2237 3.9795 -0.0012 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 4.7924 -2.1629 -0.9156 31 1 4.7137 -2.1015 0.8616 32 1 5.5283 -4.3128 0.0535 33 1 6.7668 -3.4674 1.0132 34 1 8.5835 -4.7803 -0.2270 35 1 7.1845 -5.6137 -0.9456 36 1 10.0469 -7.7535 -1.8334 37 1 8.6226 -2.3627 -0.1394 38 1 8.7010 -2.4243 -1.9169 39 1 6.6482 -1.0584 -2.0683 40 1 7.8865 -0.2127 -1.1088 41 1 7.3483 1.4123 0.0015 42 1 6.0660 3.5339 0.0015 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165055890.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:40 Heat of formation + Delta-G solvation = -14.647538 kcal Electronic energy + Delta-G solvation = -26864.142608 eV Core-core repulsion = 22871.473727 eV Total energy + Delta-G solvation = -3992.668880 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.30735 -40.24987 -38.54330 -36.96771 -36.51627 -35.21157 -33.15578 -32.62157 -30.70158 -30.64389 -28.19196 -27.70839 -25.53473 -25.08138 -23.17674 -22.92479 -21.55592 -21.26411 -19.45752 -18.61223 -17.74768 -16.81079 -16.70546 -16.67715 -16.35197 -16.16372 -15.16812 -14.82483 -14.42156 -14.28372 -14.26446 -14.01422 -13.80981 -13.68786 -13.35372 -13.11299 -12.97748 -12.37709 -12.26355 -12.11635 -11.87798 -11.78606 -11.31680 -11.04395 -10.99436 -10.90685 -10.83852 -10.66181 -10.52473 -10.47448 -10.25659 -9.94943 -9.82232 -9.76340 -9.21673 -8.48755 -8.25763 -7.34157 -6.07331 -4.09213 0.08522 0.71288 1.74579 2.10928 2.27613 3.18028 3.27744 3.35614 3.39519 3.46801 3.90166 4.33559 4.37928 4.43863 4.58885 4.80341 4.87913 4.94516 4.96389 5.07709 5.27748 5.28633 5.33025 5.37312 5.40416 5.54338 5.63803 5.73021 5.78633 5.88553 6.02523 6.11698 6.34381 6.45752 6.49250 6.61647 6.97550 7.21339 7.28055 7.30047 7.59719 7.73589 8.00932 8.11230 8.46813 8.98298 9.55468 11.03519 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.019224 B = 0.002471 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.135585 B =11330.354575 C =12137.647521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.332 6.332 3 C 0.518 3.482 4 O -0.479 6.479 5 C 0.129 3.871 6 N -0.461 5.461 7 C 0.325 3.675 8 N -0.473 5.473 9 C 0.071 3.929 10 C 0.052 3.948 11 N -0.539 5.539 12 C 0.194 3.806 13 C -0.509 4.509 14 H 0.064 0.936 15 C 0.056 3.944 16 N -0.897 5.897 17 Si 0.897 3.103 18 H -0.272 1.272 19 H -0.285 1.285 20 H -0.284 1.284 21 C 0.066 3.934 22 C 0.061 3.939 23 C -0.142 4.142 24 C -0.053 4.053 25 C -0.069 4.069 26 Cl -0.025 7.025 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.105 0.895 30 H 0.061 0.939 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.032 0.968 34 H -0.007 1.007 35 H 0.032 0.968 36 H 0.261 0.739 37 H 0.034 0.966 38 H 0.096 0.904 39 H 0.057 0.943 40 H 0.081 0.919 41 H 0.155 0.845 42 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.910 19.635 4.990 23.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.247 6.247 3 C 0.360 3.640 4 O -0.365 6.365 5 C -0.009 4.009 6 N -0.178 5.178 7 C 0.089 3.911 8 N -0.189 5.189 9 C -0.056 4.056 10 C -0.077 4.077 11 N -0.264 5.264 12 C 0.069 3.931 13 C -0.547 4.547 14 H 0.082 0.918 15 C -0.146 4.146 16 N -0.537 5.537 17 Si 0.725 3.275 18 H -0.197 1.197 19 H -0.211 1.211 20 H -0.210 1.210 21 C -0.063 4.063 22 C -0.065 4.065 23 C -0.165 4.165 24 C -0.079 4.079 25 C -0.100 4.100 26 Cl 0.004 6.996 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.123 0.877 30 H 0.080 0.920 31 H 0.102 0.898 32 H 0.098 0.902 33 H 0.050 0.950 34 H 0.011 0.989 35 H 0.050 0.950 36 H 0.071 0.929 37 H 0.052 0.948 38 H 0.114 0.886 39 H 0.075 0.925 40 H 0.100 0.900 41 H 0.173 0.827 42 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -12.567 18.984 4.998 23.309 hybrid contribution 0.811 0.617 -0.542 1.154 sum -11.756 19.601 4.457 23.286 Atomic orbital electron populations 1.23351 0.75910 1.04091 1.02530 1.86699 1.23265 1.31454 1.83294 1.20652 0.87594 0.82107 0.73653 1.90941 1.65699 1.35538 1.44357 1.19566 0.91240 0.87965 1.02176 1.67818 1.07257 1.28711 1.14026 1.20130 0.87315 0.91668 0.91946 1.59374 1.18152 1.00378 1.41043 1.22171 0.93290 0.87401 1.02744 1.22179 0.96134 0.96043 0.93340 1.62324 1.19964 1.04355 1.39780 1.19719 0.91928 0.84750 0.96725 1.21176 1.26797 1.05187 1.01581 0.91830 1.24992 0.96867 0.95759 0.96966 1.69966 1.40222 1.09531 1.33958 0.86453 0.79382 0.78124 0.83524 1.19659 1.21105 1.21006 1.22036 0.94123 0.88207 1.01937 1.22547 0.94242 1.00139 0.89538 1.21949 1.02324 0.90559 1.01715 1.21383 0.90788 0.99932 0.95848 1.21718 0.93105 0.88633 1.06593 1.98415 1.71769 1.33061 1.96308 0.91769 0.91743 0.87698 0.92037 0.89775 0.90218 0.94979 0.98909 0.95021 0.92922 0.94808 0.88632 0.92494 0.90023 0.82694 0.82577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.56 101.05 1.07 1.36 16 2 O -0.33 -4.09 10.38 -40.50 -0.42 -4.51 16 3 C 0.52 6.79 7.94 34.71 0.28 7.06 16 4 O -0.48 -6.55 13.71 -19.22 -0.26 -6.81 16 5 C 0.13 1.67 6.75 -83.02 -0.56 1.11 16 6 N -0.46 -6.38 8.45 -8.98 -0.08 -6.45 16 7 C 0.33 4.17 6.41 -155.19 -0.99 3.18 16 8 N -0.47 -6.67 4.73 -173.01 -0.82 -7.49 16 9 C 0.07 1.08 4.78 -3.76 -0.02 1.06 16 10 C 0.05 0.91 5.61 -3.76 -0.02 0.89 16 11 N -0.54 -11.05 4.70 -235.91 -1.11 -12.16 16 12 C 0.19 4.86 4.72 -4.97 -0.02 4.83 16 13 C -0.51 -13.75 8.47 -34.44 -0.29 -14.04 16 14 H 0.06 1.69 7.13 -52.48 -0.37 1.32 16 15 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 16 N -0.90 -26.10 13.29 55.43 0.74 -25.36 16 17 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 18 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 C 0.07 1.17 5.43 -3.77 -0.02 1.15 16 22 C 0.06 0.85 5.37 -3.77 -0.02 0.83 16 23 C -0.14 -1.39 9.21 -39.11 -0.36 -1.75 16 24 C -0.05 -0.47 9.96 -39.32 -0.39 -0.86 16 25 C -0.07 -0.77 6.37 -38.92 -0.25 -1.01 16 26 Cl -0.02 -0.27 26.01 -51.86 -1.35 -1.62 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 1.00 8.04 -51.93 -0.42 0.59 16 31 H 0.08 1.23 7.83 -51.93 -0.41 0.82 16 32 H 0.08 1.37 8.07 -51.93 -0.42 0.96 16 33 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 34 H -0.01 -0.19 8.12 -51.93 -0.42 -0.61 16 35 H 0.03 0.85 8.03 -51.93 -0.42 0.44 16 36 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 37 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.10 1.80 6.79 -51.93 -0.35 1.45 16 39 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.08 0.89 6.78 -51.93 -0.35 0.54 16 41 H 0.16 1.15 7.17 -52.49 -0.38 0.78 16 42 H 0.16 0.88 8.06 -52.49 -0.42 0.46 16 LS Contribution 362.34 15.07 5.46 5.46 Total: -1.00 -31.13 362.34 -10.19 -41.32 By element: Atomic # 1 Polarization: 1.98 SS G_CDS: -5.63 Total: -3.65 kcal Atomic # 6 Polarization: 6.94 SS G_CDS: -1.70 Total: 5.24 kcal Atomic # 7 Polarization: -50.20 SS G_CDS: -1.27 Total: -51.46 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: -0.68 Total: -11.32 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 17 Polarization: -0.27 SS G_CDS: -1.35 Total: -1.62 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.13 -10.19 -41.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165055890.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.674 kcal (2) G-P(sol) polarization free energy of solvation -31.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds