Wall clock time and date at job start Tue Mar 31 2020 22:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34701 * 116.99748 * 2 1 4 4 O 1.21447 * 120.00262 * 359.97438 * 3 2 1 5 5 C 1.47948 * 119.99503 * 179.97438 * 3 2 1 6 6 N 1.32962 * 119.70222 * 0.27121 * 5 3 2 7 7 C 1.31991 * 121.54092 * 180.28649 * 6 5 3 8 8 N 1.39025 * 119.61477 * 179.71845 * 7 6 5 9 9 C 1.46959 * 110.99883 * 359.72343 * 8 7 6 10 10 C 1.53058 * 109.36419 * 183.19252 * 9 8 7 11 11 N 1.46955 * 109.36051 * 301.59955 * 10 9 8 12 12 C 1.46906 * 110.99744 * 183.18754 * 11 10 9 13 13 C 1.50703 * 109.47109 * 169.99905 * 12 11 10 14 14 H 1.08005 * 119.99876 * 0.02562 * 13 12 11 15 15 C 1.37875 * 119.99989 * 180.02562 * 13 12 11 16 16 N 1.31518 * 119.99944 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99979 * 180.02562 * 15 13 12 18 18 H 1.48493 * 109.47285 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.47233 * 119.99722 * 17 15 13 20 20 H 1.48500 * 109.46790 * 239.99650 * 17 15 13 21 21 C 1.46959 * 110.88319 * 59.32174 * 11 10 9 22 22 C 1.46959 * 111.00337 * 123.52556 * 8 7 6 23 23 C 1.39554 * 120.76856 * 359.43629 * 7 6 5 24 24 C 1.38194 * 119.32216 * 0.27941 * 23 7 6 25 25 C 1.38996 * 118.56976 * 359.97438 * 24 23 7 26 26 Cl 1.73603 * 120.39991 * 180.02562 * 25 24 23 27 27 H 1.08998 * 109.47793 * 300.00102 * 1 2 3 28 28 H 1.09007 * 109.46797 * 60.00372 * 1 2 3 29 29 H 1.09000 * 109.47190 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.48972 * 63.22427 * 9 8 7 31 31 H 1.08993 * 109.50763 * 303.17136 * 9 8 7 32 32 H 1.08994 * 109.48935 * 181.63483 * 10 9 8 33 33 H 1.08999 * 109.48934 * 61.56553 * 10 9 8 34 34 H 1.08992 * 109.47459 * 289.99824 * 12 11 10 35 35 H 1.09004 * 109.47040 * 49.99975 * 12 11 10 36 36 H 0.96997 * 119.99752 * 180.02562 * 16 15 13 37 37 H 1.08995 * 109.48972 * 60.64434 * 21 11 10 38 38 H 1.08998 * 109.48999 * 180.71033 * 21 11 10 39 39 H 1.08999 * 109.48803 * 296.77705 * 22 8 7 40 40 H 1.09000 * 109.48812 * 56.82341 * 22 8 7 41 41 H 1.07999 * 120.33394 * 180.30062 * 23 7 6 42 42 H 1.07993 * 120.71090 * 179.97438 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0634 1.2002 0.0000 4 8 1.4020 2.2188 -0.0005 5 6 3.5409 1.2776 0.0006 6 7 4.2592 0.1587 -0.0044 7 6 5.5788 0.1854 0.0016 8 7 6.2901 -1.0091 0.0020 9 6 5.3807 -2.1636 0.0019 10 6 6.1992 -3.4544 0.0827 11 7 7.1248 -3.5165 -1.0570 12 6 7.8765 -4.7788 -1.0565 13 6 8.6266 -4.9173 -2.3562 14 1 8.5527 -4.1447 -3.1073 15 6 9.4071 -6.0302 -2.5864 16 7 9.4975 -6.9707 -1.6716 17 14 10.3374 -6.2016 -4.1972 18 1 10.0709 -5.0165 -5.0513 19 1 11.7934 -6.2953 -3.9204 20 1 9.8872 -7.4295 -4.9006 21 6 8.0342 -2.3621 -1.0569 22 6 7.2158 -1.0714 -1.1378 23 6 6.2684 1.3986 0.0015 24 6 5.5553 2.5824 0.0011 25 6 4.1666 2.5218 0.0001 26 17 3.2237 3.9795 -0.0012 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 4.7924 -2.1629 -0.9156 31 1 4.7137 -2.1015 0.8616 32 1 5.5283 -4.3128 0.0535 33 1 6.7668 -3.4674 1.0132 34 1 8.5835 -4.7803 -0.2270 35 1 7.1845 -5.6137 -0.9456 36 1 10.0469 -7.7535 -1.8334 37 1 8.6226 -2.3627 -0.1394 38 1 8.7010 -2.4243 -1.9169 39 1 6.6482 -1.0584 -2.0683 40 1 7.8865 -0.2127 -1.1088 41 1 7.3483 1.4123 0.0015 42 1 6.0660 3.5339 0.0015 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165055890.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:39 Heat of formation + Delta-G solvation = -34.830635 kcal Electronic energy + Delta-G solvation = -26865.017812 eV Core-core repulsion = 22871.473727 eV Total energy + Delta-G solvation = -3993.544085 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.23705 -41.22300 -39.75049 -37.91528 -37.41650 -36.61204 -34.59067 -33.99751 -31.96039 -31.83480 -29.49880 -28.80715 -26.97726 -26.14942 -24.40358 -24.15932 -23.11451 -22.26918 -20.82218 -19.51049 -18.77118 -18.43150 -17.69362 -17.58578 -17.57198 -17.19630 -16.61101 -16.18847 -15.90094 -15.58139 -15.38994 -15.27537 -14.91820 -14.80641 -14.42083 -14.13414 -13.96280 -13.80775 -13.47803 -13.14737 -13.11780 -12.98026 -12.75570 -12.66307 -12.55033 -12.34203 -12.17145 -12.07723 -11.82390 -11.69502 -11.49983 -11.23394 -11.05404 -10.90802 -10.66224 -10.60332 -9.27889 -9.04431 -8.18889 -6.28984 -0.78870 -0.11178 0.89960 1.19764 1.43195 1.44499 1.45805 1.57391 2.21940 2.41993 2.53917 2.98764 3.13800 3.26534 3.53090 3.64562 3.72732 3.89370 4.10592 4.13831 4.25861 4.29365 4.32578 4.33205 4.42970 4.48536 4.60408 4.68441 4.71355 4.84312 4.92283 4.97156 4.99668 5.08998 5.15612 5.22355 5.26978 5.49504 5.66097 5.92321 6.05479 6.31862 6.35883 6.59373 6.68247 6.87296 7.41059 8.92581 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.019224 B = 0.002471 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.135585 B =11330.354575 C =12137.647521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.348 6.348 3 C 0.515 3.485 4 O -0.493 6.493 5 C 0.104 3.896 6 N -0.483 5.483 7 C 0.305 3.695 8 N -0.476 5.476 9 C 0.087 3.913 10 C 0.055 3.945 11 N -0.547 5.547 12 C 0.209 3.791 13 C -0.520 4.520 14 H 0.067 0.933 15 C 0.001 3.999 16 N -0.936 5.936 17 Si 0.969 3.031 18 H -0.260 1.260 19 H -0.279 1.279 20 H -0.282 1.282 21 C 0.066 3.934 22 C 0.072 3.928 23 C -0.126 4.126 24 C -0.039 4.039 25 C -0.067 4.067 26 Cl -0.023 7.023 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.128 0.872 30 H 0.049 0.951 31 H 0.090 0.910 32 H 0.074 0.926 33 H 0.027 0.973 34 H -0.035 1.035 35 H 0.002 0.998 36 H 0.264 0.736 37 H 0.028 0.972 38 H 0.083 0.917 39 H 0.049 0.951 40 H 0.123 0.877 41 H 0.187 0.813 42 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.219 22.143 4.248 25.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.264 6.264 3 C 0.358 3.642 4 O -0.381 6.381 5 C -0.033 4.033 6 N -0.200 5.200 7 C 0.070 3.930 8 N -0.194 5.194 9 C -0.040 4.040 10 C -0.074 4.074 11 N -0.272 5.272 12 C 0.083 3.917 13 C -0.559 4.559 14 H 0.085 0.915 15 C -0.197 4.197 16 N -0.576 5.576 17 Si 0.794 3.206 18 H -0.184 1.184 19 H -0.204 1.204 20 H -0.208 1.208 21 C -0.062 4.062 22 C -0.053 4.053 23 C -0.148 4.148 24 C -0.065 4.065 25 C -0.098 4.098 26 Cl 0.006 6.994 27 H 0.088 0.912 28 H 0.086 0.914 29 H 0.146 0.854 30 H 0.067 0.933 31 H 0.109 0.891 32 H 0.093 0.907 33 H 0.046 0.954 34 H -0.018 1.018 35 H 0.021 0.979 36 H 0.073 0.927 37 H 0.046 0.954 38 H 0.101 0.899 39 H 0.068 0.932 40 H 0.141 0.859 41 H 0.204 0.796 42 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -11.908 21.528 4.262 24.968 hybrid contribution 0.510 -0.107 -0.258 0.582 sum -11.398 21.421 4.003 24.593 Atomic orbital electron populations 1.23632 0.74036 1.05807 1.02982 1.86683 1.25282 1.31349 1.83040 1.20830 0.87958 0.82139 0.73323 1.90917 1.66049 1.35810 1.45292 1.19656 0.91159 0.88566 1.03898 1.67664 1.08061 1.29634 1.14652 1.20249 0.87284 0.91978 0.93520 1.59401 1.18123 1.00509 1.41333 1.21884 0.92867 0.86880 1.02363 1.22186 0.95604 0.97587 0.92037 1.62234 1.20177 1.03483 1.41347 1.19349 0.90809 0.86322 0.95215 1.21482 1.26913 1.05321 1.02135 0.91532 1.25915 0.97818 0.95348 1.00608 1.70098 1.41178 1.10194 1.36153 0.85334 0.77931 0.78317 0.79032 1.18408 1.20443 1.20804 1.22040 0.94239 0.88934 1.01035 1.22456 0.94341 0.99189 0.89355 1.22259 1.03743 0.89297 0.99537 1.21813 0.89601 1.01292 0.93786 1.21951 0.94188 0.88077 1.05613 1.98419 1.72080 1.32675 1.96207 0.91220 0.91389 0.85425 0.93274 0.89147 0.90729 0.95441 1.01776 0.97950 0.92735 0.95352 0.89893 0.93222 0.85904 0.79604 0.78688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 10.56 113.37 1.20 1.65 16 2 O -0.35 -8.54 10.38 -56.11 -0.58 -9.12 16 3 C 0.51 13.32 7.94 70.40 0.56 13.88 16 4 O -0.49 -13.25 13.71 20.01 0.27 -12.98 16 5 C 0.10 2.60 6.75 41.80 0.28 2.88 16 6 N -0.48 -12.85 8.45 -182.34 -1.54 -14.39 16 7 C 0.30 7.15 6.41 133.28 0.85 8.00 16 8 N -0.48 -12.68 4.73 -701.28 -3.32 -15.99 16 9 C 0.09 2.65 4.78 86.31 0.41 3.06 16 10 C 0.05 1.96 5.61 86.31 0.48 2.45 16 11 N -0.55 -22.99 4.70 -900.28 -4.23 -27.23 16 12 C 0.21 10.95 4.72 85.56 0.40 11.36 16 13 C -0.52 -28.62 8.47 25.60 0.22 -28.41 16 14 H 0.07 3.55 7.13 -2.91 -0.02 3.53 16 15 C 0.00 0.06 5.46 84.65 0.46 0.52 16 16 N -0.94 -55.65 13.29 21.45 0.28 -55.36 16 17 Si 0.97 43.20 29.54 68.60 2.03 45.23 16 18 H -0.26 -11.00 7.11 99.48 0.71 -10.30 16 19 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 20 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 21 C 0.07 2.32 5.43 86.31 0.47 2.79 16 22 C 0.07 1.86 5.37 86.31 0.46 2.32 16 23 C -0.13 -1.94 9.21 22.58 0.21 -1.73 16 24 C -0.04 -0.53 9.96 22.44 0.22 -0.31 16 25 C -0.07 -1.33 6.37 22.70 0.14 -1.18 16 26 Cl -0.02 -0.45 26.01 -2.72 -0.07 -0.53 16 27 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 29 H 0.13 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.05 1.61 8.04 -2.39 -0.02 1.59 16 31 H 0.09 2.63 7.83 -2.39 -0.02 2.61 16 32 H 0.07 2.70 8.07 -2.39 -0.02 2.68 16 33 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 34 H -0.04 -2.02 8.12 -2.39 -0.02 -2.04 16 35 H 0.00 0.14 8.03 -2.38 -0.02 0.12 16 36 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 37 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.08 3.10 6.79 -2.39 -0.02 3.09 16 39 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.12 2.17 6.78 -2.39 -0.02 2.15 16 41 H 0.19 1.71 7.17 -2.91 -0.02 1.69 16 42 H 0.20 1.12 8.06 -2.91 -0.02 1.10 16 Total: -1.00 -69.55 362.34 0.26 -69.29 By element: Atomic # 1 Polarization: 2.76 SS G_CDS: 1.04 Total: 3.81 kcal Atomic # 6 Polarization: 10.89 SS G_CDS: 6.38 Total: 17.27 kcal Atomic # 7 Polarization: -104.16 SS G_CDS: -8.81 Total: -112.97 kcal Atomic # 8 Polarization: -21.80 SS G_CDS: -0.31 Total: -22.10 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Atomic # 17 Polarization: -0.45 SS G_CDS: -0.07 Total: -0.53 kcal Total: -69.55 0.26 -69.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165055890.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.460 kcal (2) G-P(sol) polarization free energy of solvation -69.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds