Wall clock time and date at job start Tue Mar 31 2020 22:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34769 * 117.00109 * 2 1 4 4 O 1.21522 * 119.99693 * 359.97438 * 3 2 1 5 5 C 1.47254 * 120.00285 * 180.02562 * 3 2 1 6 6 C 1.39607 * 120.62643 * 359.97438 * 5 3 2 7 7 N 1.31607 * 120.63061 * 180.02562 * 6 5 3 8 8 C 1.32304 * 122.10971 * 0.02562 * 7 6 5 9 9 Cl 1.73604 * 119.39871 * 179.97438 * 8 7 6 10 10 C 1.37972 * 121.20166 * 359.97438 * 8 7 6 11 11 C 1.39397 * 119.20840 * 0.27483 * 10 8 7 12 12 N 1.38430 * 120.94374 * 179.70036 * 11 10 8 13 13 C 1.46956 * 111.00004 * 63.80793 * 12 11 10 14 14 C 1.53045 * 109.36496 * 176.80485 * 13 12 11 15 15 N 1.46956 * 109.36631 * 58.40345 * 14 13 12 16 16 C 1.46897 * 111.00115 * 176.81147 * 15 14 13 17 17 C 1.50692 * 109.47428 * 58.97608 * 16 15 14 18 18 H 1.08003 * 120.00170 * 5.01153 * 17 16 15 19 19 C 1.37876 * 120.00026 * 185.00718 * 17 16 15 20 20 N 1.31510 * 120.00353 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99731 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47129 * 90.00313 * 21 19 17 23 23 H 1.48511 * 109.46944 * 210.00093 * 21 19 17 24 24 H 1.48499 * 109.47376 * 330.00061 * 21 19 17 25 25 C 1.46956 * 110.87741 * 300.67932 * 15 14 13 26 26 C 1.46951 * 111.00605 * 300.00345 * 12 11 10 27 27 H 1.09000 * 109.47476 * 60.00120 * 1 2 3 28 28 H 1.08997 * 109.47184 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47075 * 299.99768 * 1 2 3 30 30 H 1.07998 * 119.68081 * 0.02562 * 6 5 3 31 31 H 1.08003 * 120.39373 * 180.02562 * 10 8 7 32 32 H 1.09000 * 109.48768 * 296.77900 * 13 12 11 33 33 H 1.09006 * 109.48997 * 56.83988 * 13 12 11 34 34 H 1.09000 * 109.49312 * 298.42971 * 14 13 12 35 35 H 1.09008 * 109.50823 * 178.37729 * 14 13 12 36 36 H 1.09004 * 109.47129 * 178.97935 * 16 15 14 37 37 H 1.09004 * 109.47080 * 298.97249 * 16 15 14 38 38 H 0.97000 * 120.00641 * 179.97438 * 20 19 17 39 39 H 1.09002 * 109.48720 * 299.35534 * 25 15 14 40 40 H 1.08993 * 109.49198 * 179.28619 * 25 15 14 41 41 H 1.08999 * 109.48751 * 303.15948 * 26 12 11 42 42 H 1.09002 * 109.48682 * 63.20249 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2008 0.0000 4 8 1.4019 2.2199 -0.0005 5 6 3.5343 1.2779 -0.0006 6 6 4.3075 0.1155 -0.0006 7 7 5.6218 0.1843 -0.0006 8 6 6.2655 1.3402 -0.0001 9 17 8.0015 1.3489 0.0006 10 6 5.5821 2.5388 0.0000 11 6 4.1882 2.5272 0.0053 12 7 3.4666 3.7085 0.0117 13 6 3.7041 4.4774 -1.2179 14 6 2.8299 5.7336 -1.2078 15 7 3.1453 6.5371 -0.0185 16 6 2.3794 7.7906 -0.0118 17 6 0.9052 7.4787 -0.0323 18 1 0.5690 6.4544 0.0331 19 6 -0.0144 8.5009 -0.1344 20 7 0.3950 9.7482 -0.2144 21 14 -1.8417 8.1142 -0.1605 22 1 -2.3675 8.1137 1.2283 23 1 -2.5542 9.1437 -0.9593 24 1 -2.0562 6.7777 -0.7714 25 6 2.9078 5.7682 1.2112 26 6 3.7819 4.5120 1.2010 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 3.8224 -0.8494 -0.0006 31 1 6.1209 3.4749 0.0000 32 1 4.7541 4.7653 -1.2697 33 1 3.4514 3.8656 -2.0840 34 1 1.7790 5.4452 -1.1836 35 1 3.0254 6.3204 -2.1054 36 1 2.6183 8.3576 0.8880 37 1 2.6385 8.3795 -0.8917 38 1 -0.2519 10.4673 -0.2866 39 1 1.8578 5.4801 1.2628 40 1 3.1604 6.3800 2.0771 41 1 3.5861 3.9253 2.0986 42 1 4.8329 4.8001 1.1770 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165055995.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:31 Heat of formation + Delta-G solvation = -21.835241 kcal Electronic energy + Delta-G solvation = -27700.255202 eV Core-core repulsion = 23707.274640 eV Total energy + Delta-G solvation = -3992.980563 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.29965 -39.85012 -38.76420 -37.01261 -36.40358 -35.55698 -32.66700 -31.99893 -31.21578 -30.51245 -28.11826 -27.48089 -25.23302 -24.80551 -23.13831 -23.11320 -21.58746 -21.23874 -19.29376 -18.35445 -17.71994 -17.23203 -16.47580 -16.42281 -16.21737 -15.47379 -15.14951 -15.01168 -14.68238 -14.42626 -14.24237 -14.11699 -13.86607 -13.26239 -13.24313 -13.08160 -12.71535 -12.24917 -12.05507 -11.99290 -11.91403 -11.68774 -11.22459 -10.96165 -10.89899 -10.82678 -10.74609 -10.65599 -10.46959 -10.18911 -10.02378 -9.84005 -9.82927 -9.56853 -9.42657 -8.45027 -8.42950 -7.22765 -6.02705 -4.11113 0.07028 0.65565 1.38815 2.38935 2.51734 3.28553 3.30698 3.35238 3.40281 3.52757 4.02060 4.34558 4.42229 4.53000 4.66268 4.91265 4.96458 5.01967 5.10306 5.10805 5.27873 5.28601 5.37401 5.38110 5.55145 5.59817 5.72138 5.78801 5.88552 6.03552 6.16256 6.27421 6.51400 6.72956 6.83522 6.95235 7.16893 7.21937 7.24777 7.51850 7.77306 7.89697 8.00257 8.21745 8.28786 8.99548 9.56076 11.02619 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.012584 B = 0.003576 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.536907 B = 7827.701875 C = 9718.220068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.366 6.366 3 C 0.500 3.500 4 O -0.444 6.444 5 C -0.161 4.161 6 C 0.182 3.818 7 N -0.493 5.493 8 C 0.211 3.789 9 Cl -0.024 7.024 10 C -0.199 4.199 11 C 0.226 3.774 12 N -0.492 5.492 13 C 0.068 3.932 14 C 0.067 3.933 15 N -0.543 5.543 16 C 0.188 3.812 17 C -0.548 4.548 18 H 0.060 0.940 19 C 0.065 3.935 20 N -0.892 5.892 21 Si 0.888 3.112 22 H -0.281 1.281 23 H -0.286 1.286 24 H -0.274 1.274 25 C 0.065 3.935 26 C 0.066 3.934 27 H 0.064 0.936 28 H 0.100 0.900 29 H 0.064 0.936 30 H 0.183 0.817 31 H 0.155 0.845 32 H 0.044 0.956 33 H 0.071 0.929 34 H 0.057 0.943 35 H 0.073 0.927 36 H 0.028 0.972 37 H 0.035 0.965 38 H 0.262 0.738 39 H 0.054 0.946 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.015 -20.376 0.392 22.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.284 6.284 3 C 0.340 3.660 4 O -0.327 6.327 5 C -0.166 4.166 6 C 0.022 3.978 7 N -0.204 5.204 8 C 0.048 3.952 9 Cl 0.005 6.995 10 C -0.223 4.223 11 C 0.122 3.878 12 N -0.213 5.213 13 C -0.058 4.058 14 C -0.062 4.062 15 N -0.267 5.267 16 C 0.062 3.938 17 C -0.587 4.587 18 H 0.079 0.921 19 C -0.137 4.137 20 N -0.531 5.531 21 Si 0.716 3.284 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.199 1.199 25 C -0.064 4.064 26 C -0.060 4.060 27 H 0.083 0.917 28 H 0.118 0.882 29 H 0.083 0.917 30 H 0.199 0.801 31 H 0.173 0.827 32 H 0.062 0.938 33 H 0.090 0.910 34 H 0.075 0.925 35 H 0.092 0.908 36 H 0.046 0.954 37 H 0.053 0.947 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 9.349 -20.549 0.369 22.579 hybrid contribution -1.626 0.663 0.005 1.756 sum 7.722 -19.886 0.374 21.336 Atomic orbital electron populations 1.23241 0.75734 1.03462 1.02936 1.86491 1.23716 1.32917 1.85258 1.20488 0.88132 0.81976 0.75357 1.91034 1.65478 1.35000 1.41163 1.20299 0.91695 0.94092 1.10512 1.23094 0.87124 0.98277 0.89280 1.67115 1.10416 1.27682 1.15200 1.21766 0.87723 0.89846 0.95841 1.98429 1.06495 1.98552 1.96045 1.22605 0.94943 0.99205 1.05498 1.19162 0.88890 0.92063 0.87658 1.59555 1.53890 1.03112 1.04760 1.22366 0.99174 0.94835 0.89425 1.21902 0.98319 0.91314 0.94681 1.62738 1.57034 1.06386 1.00579 1.19730 0.90420 0.85645 0.97970 1.21780 0.92534 0.93341 1.51073 0.92143 1.24946 0.98885 0.94976 0.94907 1.69940 1.34300 0.98848 1.50023 0.86654 0.85569 0.78133 0.78054 1.20676 1.21211 1.19856 1.21915 0.98454 0.91752 0.94271 1.22367 0.98802 0.94404 0.90394 0.91735 0.88164 0.91747 0.80058 0.82730 0.93810 0.91033 0.92515 0.90835 0.95412 0.94672 0.92855 0.92819 0.90889 0.91028 0.93764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.57 101.05 1.07 1.42 16 2 O -0.37 -4.01 9.84 -40.68 -0.40 -4.41 16 3 C 0.50 6.78 7.89 34.39 0.27 7.05 16 4 O -0.44 -7.66 14.95 -19.28 -0.29 -7.95 16 5 C -0.16 -1.99 5.91 -104.67 -0.62 -2.61 16 6 C 0.18 1.87 10.79 -17.14 -0.18 1.68 16 7 N -0.49 -5.61 10.31 -10.09 -0.10 -5.71 16 8 C 0.21 2.36 7.26 -17.45 -0.13 2.23 16 9 Cl -0.02 -0.24 29.09 -51.86 -1.51 -1.75 16 10 C -0.20 -2.28 8.47 -39.25 -0.33 -2.61 16 11 C 0.23 2.98 4.72 -83.40 -0.39 2.58 16 12 N -0.49 -7.58 2.77 -170.52 -0.47 -8.05 16 13 C 0.07 1.05 5.36 -3.77 -0.02 1.03 16 14 C 0.07 1.29 5.24 -3.77 -0.02 1.27 16 15 N -0.54 -11.31 4.92 -235.92 -1.16 -12.47 16 16 C 0.19 4.75 5.14 -4.98 -0.03 4.72 16 17 C -0.55 -15.00 7.66 -34.44 -0.26 -15.26 16 18 H 0.06 1.69 5.82 -52.48 -0.31 1.38 16 19 C 0.07 1.83 5.46 -17.82 -0.10 1.74 16 20 N -0.89 -26.13 13.29 55.43 0.74 -25.39 16 21 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 25 C 0.07 1.24 5.32 -3.77 -0.02 1.22 16 26 C 0.07 1.01 5.31 -3.77 -0.02 0.99 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.18 1.36 7.62 -52.49 -0.40 0.97 16 31 H 0.16 1.63 7.20 -52.48 -0.38 1.25 16 32 H 0.04 0.63 7.50 -51.93 -0.39 0.24 16 33 H 0.07 1.05 8.13 -51.93 -0.42 0.62 16 34 H 0.06 1.27 6.62 -51.93 -0.34 0.93 16 35 H 0.07 1.40 8.14 -51.92 -0.42 0.98 16 36 H 0.03 0.75 8.12 -51.93 -0.42 0.32 16 37 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 39 H 0.05 1.18 6.78 -51.93 -0.35 0.83 16 40 H 0.07 1.35 8.12 -51.93 -0.42 0.93 16 41 H 0.07 1.02 8.13 -51.93 -0.42 0.60 16 42 H 0.04 0.63 7.30 -51.93 -0.38 0.25 16 LS Contribution 361.46 15.07 5.45 5.45 Total: -1.00 -31.02 361.46 -9.04 -40.06 By element: Atomic # 1 Polarization: 3.61 SS G_CDS: -5.48 Total: -1.87 kcal Atomic # 6 Polarization: 6.25 SS G_CDS: -0.78 Total: 5.47 kcal Atomic # 7 Polarization: -50.62 SS G_CDS: -1.00 Total: -51.62 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: -0.69 Total: -12.36 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 17 Polarization: -0.24 SS G_CDS: -1.51 Total: -1.75 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.02 -9.04 -40.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165055995.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.221 kcal (2) G-P(sol) polarization free energy of solvation -31.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds