Wall clock time and date at job start Tue Mar 31 2020 22:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34697 * 116.99685 * 2 1 4 4 O 1.21451 * 119.99960 * 0.02562 * 3 2 1 5 5 C 1.47976 * 120.00091 * 180.02562 * 3 2 1 6 6 C 1.39200 * 119.66968 * 180.02562 * 5 3 2 7 7 C 1.38759 * 119.23236 * 179.97438 * 6 5 3 8 8 C 1.38409 * 118.57414 * 359.75243 * 7 6 5 9 9 Cl 1.73601 * 120.35855 * 180.26449 * 8 7 6 10 10 C 1.39633 * 119.27675 * 0.47398 * 8 7 6 11 11 N 1.39025 * 119.64152 * 179.78918 * 10 8 7 12 12 C 1.46957 * 110.99816 * 143.10247 * 11 10 8 13 13 C 1.53047 * 109.36652 * 183.19206 * 12 11 10 14 14 N 1.46957 * 109.36272 * 301.59565 * 13 12 11 15 15 C 1.46896 * 111.00205 * 183.18838 * 14 13 12 16 16 C 1.50707 * 109.47234 * 170.00083 * 15 14 13 17 17 H 1.07994 * 119.99745 * 359.97438 * 16 15 14 18 18 C 1.37872 * 119.99836 * 180.02562 * 16 15 14 19 19 N 1.31517 * 120.00166 * 180.02562 * 18 16 15 20 20 Si 1.86797 * 120.00349 * 359.97438 * 18 16 15 21 21 H 1.48500 * 109.47449 * 90.00387 * 20 18 16 22 22 H 1.48501 * 109.47250 * 210.00456 * 20 18 16 23 23 H 1.48504 * 109.47082 * 330.00254 * 20 18 16 24 24 C 1.46963 * 110.88077 * 59.31968 * 14 13 12 25 25 C 1.46957 * 111.00338 * 266.89966 * 11 10 8 26 26 N 1.32001 * 120.70832 * 359.51681 * 10 8 7 27 27 H 1.08991 * 109.47161 * 299.99900 * 1 2 3 28 28 H 1.09006 * 109.47353 * 60.00456 * 1 2 3 29 29 H 1.09007 * 109.46810 * 179.97438 * 1 2 3 30 30 H 1.07991 * 120.38582 * 0.02671 * 6 5 3 31 31 H 1.08003 * 120.70724 * 179.97438 * 7 6 5 32 32 H 1.09002 * 109.49033 * 63.22053 * 12 11 10 33 33 H 1.09008 * 109.50641 * 303.16600 * 12 11 10 34 34 H 1.09002 * 109.49283 * 181.63052 * 13 12 11 35 35 H 1.08996 * 109.49545 * 61.56250 * 13 12 11 36 36 H 1.08994 * 109.47574 * 290.00057 * 15 14 13 37 37 H 1.09004 * 109.47327 * 50.00114 * 15 14 13 38 38 H 0.96998 * 120.00304 * 179.97438 * 19 18 16 39 39 H 1.08997 * 109.48142 * 60.64507 * 24 14 13 40 40 H 1.08992 * 109.48949 * 180.71256 * 24 14 13 41 41 H 1.08993 * 109.48884 * 296.78102 * 25 11 10 42 42 H 1.09003 * 109.48538 * 56.82312 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0634 1.2002 0.0000 4 8 1.4019 2.2187 0.0005 5 6 3.5412 1.2777 -0.0006 6 6 4.1659 2.5217 0.0000 7 6 5.5521 2.5838 0.0000 8 6 6.2678 1.3992 0.0047 9 17 8.0037 1.4229 0.0118 10 6 5.5785 0.1849 -0.0008 11 7 6.2899 -1.0096 -0.0006 12 6 5.6134 -2.0253 0.8181 13 6 6.4659 -3.2958 0.8574 14 7 6.6772 -3.7832 -0.5128 15 6 7.4288 -5.0453 -0.5125 16 6 7.4149 -5.6387 -1.8978 17 1 6.8988 -5.1293 -2.6982 18 6 8.0600 -6.8322 -2.1430 19 7 8.0482 -7.3498 -3.3520 20 14 8.9519 -7.7136 -0.7585 21 1 8.0153 -8.6452 -0.0802 22 1 10.0957 -8.4798 -1.3152 23 1 9.4540 -6.7163 0.2207 24 6 7.3537 -2.7675 -1.3316 25 6 6.5013 -1.4970 -1.3708 26 7 4.2588 0.1589 -0.0008 27 1 -0.3633 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 3.5785 3.4279 0.0012 31 1 6.0614 3.5362 0.0000 32 1 4.6402 -2.2536 0.3835 33 1 5.4793 -1.6460 1.8312 34 1 5.9524 -4.0605 1.4402 35 1 7.4289 -3.0735 1.3168 36 1 8.4583 -4.8551 -0.2092 37 1 6.9672 -5.7430 0.1862 38 1 8.5024 -8.1893 -3.5246 39 1 8.3268 -2.5393 -0.8969 40 1 7.4875 -3.1470 -2.3445 41 1 5.5382 -1.7193 -1.8302 42 1 7.0144 -0.7322 -1.9537 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165056000.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:42 Heat of formation + Delta-G solvation = -18.997097 kcal Electronic energy + Delta-G solvation = -27060.857898 eV Core-core repulsion = 23068.000407 eV Total energy + Delta-G solvation = -3992.857491 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.35510 -40.29213 -38.52407 -36.90524 -36.74381 -35.35456 -32.91717 -32.51396 -30.96667 -30.61496 -28.38147 -28.02508 -25.55984 -24.99802 -23.24054 -23.03129 -21.47334 -21.07560 -19.40884 -18.68681 -17.79300 -16.90522 -16.88209 -16.74115 -16.65120 -16.13974 -15.29898 -14.72956 -14.43893 -14.32345 -14.12768 -13.94528 -13.90009 -13.69095 -13.42173 -13.13217 -12.98315 -12.38851 -12.30672 -12.22115 -12.02148 -11.61313 -11.49011 -11.22122 -11.08435 -11.05022 -10.86709 -10.79667 -10.47709 -10.30264 -10.22860 -10.00104 -9.83256 -9.41934 -9.25454 -8.57708 -8.51637 -7.39151 -6.05331 -4.02851 -0.03337 0.65164 1.73295 1.95322 2.25460 3.20090 3.28915 3.35128 3.36497 3.38538 3.85257 4.32837 4.40532 4.42135 4.57998 4.68439 4.73295 4.83243 4.91723 5.17109 5.22957 5.26902 5.32448 5.36076 5.42771 5.55486 5.68847 5.74106 5.79642 5.90011 5.94898 6.07509 6.28700 6.46392 6.56381 6.71091 6.88643 6.99612 7.03118 7.14819 7.47923 7.58399 7.87946 8.01632 8.64854 9.02638 9.56417 11.07666 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.013029 B = 0.003113 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2148.530888 B = 8993.729997 C =10502.400116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.330 6.330 3 C 0.526 3.474 4 O -0.499 6.499 5 C 0.105 3.895 6 C -0.108 4.108 7 C -0.069 4.069 8 C -0.043 4.043 9 Cl -0.024 7.024 10 C 0.318 3.682 11 N -0.480 5.480 12 C 0.066 3.934 13 C 0.054 3.946 14 N -0.528 5.528 15 C 0.163 3.837 16 C -0.510 4.510 17 H 0.081 0.919 18 C 0.069 3.931 19 N -0.900 5.900 20 Si 0.875 3.125 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.268 1.268 24 C 0.069 3.931 25 C 0.066 3.934 26 N -0.447 5.447 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.106 0.894 30 H 0.159 0.841 31 H 0.159 0.841 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.032 0.968 36 H -0.010 1.010 37 H 0.025 0.975 38 H 0.263 0.737 39 H 0.034 0.966 40 H 0.098 0.902 41 H 0.056 0.944 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.263 21.708 8.801 24.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.244 6.244 3 C 0.369 3.631 4 O -0.387 6.387 5 C -0.033 4.033 6 C -0.129 4.129 7 C -0.096 4.096 8 C -0.075 4.075 9 Cl 0.006 6.994 10 C 0.084 3.916 11 N -0.202 5.202 12 C -0.061 4.061 13 C -0.075 4.075 14 N -0.253 5.253 15 C 0.037 3.963 16 C -0.548 4.548 17 H 0.099 0.901 18 C -0.133 4.133 19 N -0.539 5.539 20 Si 0.702 3.298 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.192 1.192 24 C -0.059 4.059 25 C -0.060 4.060 26 N -0.163 5.163 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.125 0.875 30 H 0.176 0.824 31 H 0.176 0.824 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.096 0.904 35 H 0.051 0.949 36 H 0.008 0.992 37 H 0.043 0.957 38 H 0.073 0.927 39 H 0.052 0.948 40 H 0.116 0.884 41 H 0.074 0.926 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -8.728 20.979 8.682 24.324 hybrid contribution 0.919 0.216 0.761 1.213 sum -7.809 21.195 9.442 24.482 Atomic orbital electron populations 1.23389 0.75728 1.04320 1.02544 1.86723 1.23458 1.31306 1.82925 1.20731 0.87711 0.81950 0.72694 1.90856 1.65839 1.36173 1.45817 1.19921 0.90843 0.89760 1.02798 1.21988 0.94313 0.98424 0.98175 1.21487 0.93111 0.97998 0.96958 1.22031 0.87782 0.94116 1.03556 1.98413 1.06207 1.98729 1.96082 1.19824 0.86079 0.91781 0.93888 1.60263 1.43547 1.02161 1.14227 1.22179 0.97302 0.90301 0.96304 1.22146 0.98276 0.94913 0.92173 1.62115 1.50179 1.04296 1.08709 1.20156 0.90845 0.86610 0.98694 1.21022 1.33437 1.06333 0.93985 0.90141 1.24892 0.96021 0.97015 0.95362 1.69892 1.44004 1.19842 1.20180 0.86870 0.79848 0.80181 0.82905 1.20169 1.21255 1.19235 1.22026 0.94055 0.89216 1.00632 1.22374 1.00820 0.97310 0.85497 1.67990 1.07186 1.30494 1.10602 0.91717 0.91660 0.87520 0.82369 0.82357 0.91408 0.91051 0.90430 0.94936 0.99212 0.95710 0.92672 0.94811 0.88359 0.92575 0.90596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.56 101.05 1.07 1.34 16 2 O -0.33 -3.96 10.38 -40.49 -0.42 -4.38 16 3 C 0.53 6.41 7.95 34.72 0.28 6.69 16 4 O -0.50 -6.39 16.10 -19.23 -0.31 -6.70 16 5 C 0.10 1.24 6.74 -83.05 -0.56 0.68 16 6 C -0.11 -0.97 9.62 -39.03 -0.38 -1.35 16 7 C -0.07 -0.57 9.96 -39.33 -0.39 -0.96 16 8 C -0.04 -0.47 6.37 -39.00 -0.25 -0.72 16 9 Cl -0.02 -0.25 28.47 -51.86 -1.48 -1.73 16 10 C 0.32 4.20 5.61 -155.15 -0.87 3.33 16 11 N -0.48 -7.00 4.08 -172.98 -0.71 -7.70 16 12 C 0.07 0.99 5.13 -3.77 -0.02 0.98 16 13 C 0.05 0.92 5.61 -3.77 -0.02 0.90 16 14 N -0.53 -10.85 4.70 -235.91 -1.11 -11.96 16 15 C 0.16 3.89 3.79 -4.97 -0.02 3.87 16 16 C -0.51 -14.22 9.03 -34.44 -0.31 -14.53 16 17 H 0.08 2.44 7.38 -52.49 -0.39 2.05 16 18 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 19 N -0.90 -27.31 13.96 55.43 0.77 -26.54 16 20 Si 0.87 21.31 27.47 -169.99 -4.67 16.64 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 24 C 0.07 1.30 5.43 -3.77 -0.02 1.27 16 25 C 0.07 1.03 5.55 -3.77 -0.02 1.00 16 26 N -0.45 -6.08 8.95 -8.98 -0.08 -6.16 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.16 1.11 7.63 -52.49 -0.40 0.71 16 31 H 0.16 0.80 8.06 -52.48 -0.42 0.38 16 32 H 0.07 1.11 7.70 -51.93 -0.40 0.71 16 33 H 0.07 0.97 8.13 -51.92 -0.42 0.55 16 34 H 0.08 1.26 8.07 -51.93 -0.42 0.84 16 35 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 36 H -0.01 -0.24 7.18 -51.93 -0.37 -0.61 16 37 H 0.02 0.59 7.45 -51.93 -0.39 0.21 16 38 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 39 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.10 2.03 6.79 -51.93 -0.35 1.68 16 41 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 42 H 0.08 1.06 8.13 -51.93 -0.42 0.64 16 LS Contribution 365.34 15.07 5.51 5.51 Total: -1.00 -32.06 365.34 -9.79 -41.85 By element: Atomic # 1 Polarization: 2.49 SS G_CDS: -5.69 Total: -3.19 kcal Atomic # 6 Polarization: 5.98 SS G_CDS: -1.61 Total: 4.36 kcal Atomic # 7 Polarization: -51.24 SS G_CDS: -1.12 Total: -52.36 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: -0.73 Total: -11.08 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.67 Total: 16.64 kcal Atomic # 17 Polarization: -0.25 SS G_CDS: -1.48 Total: -1.73 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.06 -9.79 -41.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165056000.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.856 kcal (2) G-P(sol) polarization free energy of solvation -32.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds