Wall clock time and date at job start Tue Mar 31 2020 22:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34697 * 116.99685 * 2 1 4 4 O 1.21451 * 119.99960 * 0.02562 * 3 2 1 5 5 C 1.47976 * 120.00091 * 180.02562 * 3 2 1 6 6 C 1.39200 * 119.66968 * 180.02562 * 5 3 2 7 7 C 1.38759 * 119.23236 * 179.97438 * 6 5 3 8 8 C 1.38409 * 118.57414 * 359.75243 * 7 6 5 9 9 Cl 1.73601 * 120.35855 * 180.26449 * 8 7 6 10 10 C 1.39633 * 119.27675 * 0.47398 * 8 7 6 11 11 N 1.39025 * 119.64152 * 179.78918 * 10 8 7 12 12 C 1.46957 * 110.99816 * 143.10247 * 11 10 8 13 13 C 1.53047 * 109.36652 * 183.19206 * 12 11 10 14 14 N 1.46957 * 109.36272 * 301.59565 * 13 12 11 15 15 C 1.46896 * 111.00205 * 183.18838 * 14 13 12 16 16 C 1.50707 * 109.47234 * 170.00083 * 15 14 13 17 17 H 1.07994 * 119.99745 * 359.97438 * 16 15 14 18 18 C 1.37872 * 119.99836 * 180.02562 * 16 15 14 19 19 N 1.31517 * 120.00166 * 180.02562 * 18 16 15 20 20 Si 1.86797 * 120.00349 * 359.97438 * 18 16 15 21 21 H 1.48500 * 109.47449 * 90.00387 * 20 18 16 22 22 H 1.48501 * 109.47250 * 210.00456 * 20 18 16 23 23 H 1.48504 * 109.47082 * 330.00254 * 20 18 16 24 24 C 1.46963 * 110.88077 * 59.31968 * 14 13 12 25 25 C 1.46957 * 111.00338 * 266.89966 * 11 10 8 26 26 N 1.32001 * 120.70832 * 359.51681 * 10 8 7 27 27 H 1.08991 * 109.47161 * 299.99900 * 1 2 3 28 28 H 1.09006 * 109.47353 * 60.00456 * 1 2 3 29 29 H 1.09007 * 109.46810 * 179.97438 * 1 2 3 30 30 H 1.07991 * 120.38582 * 0.02671 * 6 5 3 31 31 H 1.08003 * 120.70724 * 179.97438 * 7 6 5 32 32 H 1.09002 * 109.49033 * 63.22053 * 12 11 10 33 33 H 1.09008 * 109.50641 * 303.16600 * 12 11 10 34 34 H 1.09002 * 109.49283 * 181.63052 * 13 12 11 35 35 H 1.08996 * 109.49545 * 61.56250 * 13 12 11 36 36 H 1.08994 * 109.47574 * 290.00057 * 15 14 13 37 37 H 1.09004 * 109.47327 * 50.00114 * 15 14 13 38 38 H 0.96998 * 120.00304 * 179.97438 * 19 18 16 39 39 H 1.08997 * 109.48142 * 60.64507 * 24 14 13 40 40 H 1.08992 * 109.48949 * 180.71256 * 24 14 13 41 41 H 1.08993 * 109.48884 * 296.78102 * 25 11 10 42 42 H 1.09003 * 109.48538 * 56.82312 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0634 1.2002 0.0000 4 8 1.4019 2.2187 0.0005 5 6 3.5412 1.2777 -0.0006 6 6 4.1659 2.5217 0.0000 7 6 5.5521 2.5838 0.0000 8 6 6.2678 1.3992 0.0047 9 17 8.0037 1.4229 0.0118 10 6 5.5785 0.1849 -0.0008 11 7 6.2899 -1.0096 -0.0006 12 6 5.6134 -2.0253 0.8181 13 6 6.4659 -3.2958 0.8574 14 7 6.6772 -3.7832 -0.5128 15 6 7.4288 -5.0453 -0.5125 16 6 7.4149 -5.6387 -1.8978 17 1 6.8988 -5.1293 -2.6982 18 6 8.0600 -6.8322 -2.1430 19 7 8.0482 -7.3498 -3.3520 20 14 8.9519 -7.7136 -0.7585 21 1 8.0153 -8.6452 -0.0802 22 1 10.0957 -8.4798 -1.3152 23 1 9.4540 -6.7163 0.2207 24 6 7.3537 -2.7675 -1.3316 25 6 6.5013 -1.4970 -1.3708 26 7 4.2588 0.1589 -0.0008 27 1 -0.3633 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 3.5785 3.4279 0.0012 31 1 6.0614 3.5362 0.0000 32 1 4.6402 -2.2536 0.3835 33 1 5.4793 -1.6460 1.8312 34 1 5.9524 -4.0605 1.4402 35 1 7.4289 -3.0735 1.3168 36 1 8.4583 -4.8551 -0.2092 37 1 6.9672 -5.7430 0.1862 38 1 8.5024 -8.1893 -3.5246 39 1 8.3268 -2.5393 -0.8969 40 1 7.4875 -3.1470 -2.3445 41 1 5.5382 -1.7193 -1.8302 42 1 7.0144 -0.7322 -1.9537 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165056000.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:42 Heat of formation + Delta-G solvation = -40.401917 kcal Electronic energy + Delta-G solvation = -27061.786081 eV Core-core repulsion = 23068.000407 eV Total energy + Delta-G solvation = -3993.785674 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.25792 -41.23898 -39.77195 -37.76475 -37.62014 -36.75028 -34.59469 -33.71299 -32.14257 -31.96910 -29.94627 -28.85379 -26.99303 -25.92548 -24.59813 -24.11131 -22.89383 -22.32233 -20.78827 -19.55349 -19.00324 -18.68388 -17.74943 -17.64751 -17.58902 -17.18072 -16.52284 -16.37900 -15.94391 -15.64110 -15.37052 -15.03927 -15.02180 -14.76138 -14.55793 -14.26208 -14.12033 -13.89501 -13.55605 -13.21047 -13.08555 -13.06481 -12.86790 -12.47129 -12.37651 -12.21131 -12.13150 -12.07919 -11.87626 -11.83549 -11.71572 -11.38257 -11.09067 -10.92211 -10.75887 -10.35113 -9.61987 -9.03386 -8.26128 -6.29477 -0.87410 -0.15159 0.90492 1.07449 1.37264 1.38279 1.47834 1.49016 2.26168 2.36467 2.41852 2.95814 3.06636 3.18887 3.54211 3.64276 3.77424 3.81773 4.02053 4.09643 4.21973 4.23463 4.30620 4.31800 4.44365 4.53561 4.56553 4.64288 4.69534 4.77679 4.81956 4.92160 4.97488 5.02871 5.06881 5.12229 5.18339 5.53355 5.60165 5.89110 6.03381 6.23512 6.34261 6.60752 6.64995 6.76482 7.34178 8.90314 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.013029 B = 0.003113 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2148.530888 B = 8993.729997 C =10502.400116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.350 6.350 3 C 0.526 3.474 4 O -0.511 6.511 5 C 0.085 3.915 6 C -0.089 4.089 7 C -0.050 4.050 8 C -0.044 4.044 9 Cl -0.022 7.022 10 C 0.295 3.705 11 N -0.478 5.478 12 C 0.077 3.923 13 C 0.056 3.944 14 N -0.546 5.546 15 C 0.174 3.826 16 C -0.515 4.515 17 H 0.038 0.962 18 C 0.009 3.991 19 N -0.948 5.948 20 Si 0.947 3.053 21 H -0.266 1.266 22 H -0.283 1.283 23 H -0.251 1.251 24 C 0.075 3.925 25 C 0.081 3.919 26 N -0.471 5.471 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.125 0.875 30 H 0.184 0.816 31 H 0.199 0.801 32 H 0.050 0.950 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.038 0.962 36 H -0.010 1.010 37 H 0.030 0.970 38 H 0.266 0.734 39 H 0.035 0.965 40 H 0.067 0.933 41 H 0.037 0.963 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.982 23.783 10.992 27.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.264 6.264 3 C 0.370 3.630 4 O -0.399 6.399 5 C -0.053 4.053 6 C -0.109 4.109 7 C -0.076 4.076 8 C -0.075 4.075 9 Cl 0.007 6.993 10 C 0.062 3.938 11 N -0.200 5.200 12 C -0.050 4.050 13 C -0.072 4.072 14 N -0.271 5.271 15 C 0.047 3.953 16 C -0.553 4.553 17 H 0.056 0.944 18 C -0.189 4.189 19 N -0.589 5.589 20 Si 0.770 3.230 21 H -0.191 1.191 22 H -0.209 1.209 23 H -0.175 1.175 24 C -0.054 4.054 25 C -0.045 4.045 26 N -0.186 5.186 27 H 0.091 0.909 28 H 0.088 0.912 29 H 0.143 0.857 30 H 0.201 0.799 31 H 0.216 0.784 32 H 0.069 0.931 33 H 0.109 0.891 34 H 0.104 0.896 35 H 0.056 0.944 36 H 0.007 0.993 37 H 0.048 0.952 38 H 0.075 0.925 39 H 0.054 0.946 40 H 0.085 0.915 41 H 0.056 0.944 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -8.471 23.083 10.889 26.892 hybrid contribution 0.713 -0.309 0.011 0.777 sum -7.757 22.774 10.900 26.413 Atomic orbital electron populations 1.23659 0.73922 1.05846 1.03160 1.86707 1.25448 1.31537 1.82750 1.20855 0.88005 0.81855 0.72333 1.90838 1.66131 1.36333 1.46640 1.20125 0.90665 0.90447 1.04034 1.22307 0.94787 0.98139 0.95677 1.21915 0.92626 0.98588 0.94500 1.22119 0.87915 0.94159 1.03341 1.98418 1.06126 1.98714 1.96065 1.19770 0.86216 0.91665 0.96178 1.60232 1.44149 1.02559 1.13028 1.22027 0.95903 0.89760 0.97316 1.22211 0.98980 0.96057 0.89984 1.62008 1.49868 1.03920 1.11259 1.19907 0.91245 0.88206 0.95963 1.21241 1.32619 1.06358 0.95101 0.94355 1.25823 0.96992 0.97939 0.98099 1.70049 1.45492 1.20620 1.22709 0.85720 0.78562 0.79090 0.79583 1.19053 1.20883 1.17452 1.21892 0.94795 0.90037 0.98635 1.22111 0.99318 0.96249 0.86869 1.67827 1.07565 1.31880 1.11350 0.90900 0.91237 0.85655 0.79889 0.78393 0.93117 0.89146 0.89616 0.94384 0.99253 0.95170 0.92473 0.94636 0.91473 0.94427 0.88867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.56 113.37 1.20 1.61 16 2 O -0.35 -8.29 10.38 -56.07 -0.58 -8.87 16 3 C 0.53 12.33 7.95 70.40 0.56 12.89 16 4 O -0.51 -12.38 16.10 19.99 0.32 -12.06 16 5 C 0.08 1.87 6.74 41.79 0.28 2.15 16 6 C -0.09 -1.31 9.62 22.63 0.22 -1.09 16 7 C -0.05 -0.64 9.96 22.44 0.22 -0.42 16 8 C -0.04 -0.85 6.37 22.65 0.14 -0.70 16 9 Cl -0.02 -0.43 28.47 -2.72 -0.08 -0.51 16 10 C 0.30 7.40 5.61 133.30 0.75 8.15 16 11 N -0.48 -13.53 4.08 -701.19 -2.86 -16.40 16 12 C 0.08 2.26 5.13 86.31 0.44 2.71 16 13 C 0.06 1.85 5.61 86.31 0.48 2.34 16 14 N -0.55 -22.70 4.70 -900.30 -4.23 -26.94 16 15 C 0.17 8.31 3.79 85.56 0.32 8.64 16 16 C -0.51 -29.73 9.03 25.60 0.23 -29.50 16 17 H 0.04 2.47 7.38 -2.91 -0.02 2.45 16 18 C 0.01 0.51 5.47 84.65 0.46 0.97 16 19 N -0.95 -59.27 13.96 21.45 0.30 -58.97 16 20 Si 0.95 43.95 27.47 68.60 1.88 45.83 16 21 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 22 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 23 H -0.25 -10.88 6.54 99.48 0.65 -10.22 16 24 C 0.07 2.88 5.43 86.31 0.47 3.35 16 25 C 0.08 2.55 5.55 86.31 0.48 3.03 16 26 N -0.47 -12.40 8.95 -182.32 -1.63 -14.03 16 27 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 29 H 0.13 1.38 8.14 -2.38 -0.02 1.36 16 30 H 0.18 1.83 7.63 -2.92 -0.02 1.81 16 31 H 0.20 0.95 8.06 -2.91 -0.02 0.93 16 32 H 0.05 1.67 7.70 -2.39 -0.02 1.65 16 33 H 0.09 2.32 8.13 -2.38 -0.02 2.30 16 34 H 0.09 2.67 8.07 -2.39 -0.02 2.65 16 35 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 36 H -0.01 -0.49 7.18 -2.39 -0.02 -0.50 16 37 H 0.03 1.41 7.45 -2.38 -0.02 1.40 16 38 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 39 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.07 2.96 6.79 -2.39 -0.02 2.94 16 41 H 0.04 1.31 8.14 -2.39 -0.02 1.30 16 42 H 0.09 2.58 8.13 -2.39 -0.02 2.56 16 Total: -1.00 -71.66 365.34 0.37 -71.30 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: 0.98 Total: 6.51 kcal Atomic # 6 Polarization: 7.86 SS G_CDS: 6.26 Total: 14.12 kcal Atomic # 7 Polarization: -107.90 SS G_CDS: -8.43 Total: -116.33 kcal Atomic # 8 Polarization: -20.67 SS G_CDS: -0.26 Total: -20.93 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 1.88 Total: 45.83 kcal Atomic # 17 Polarization: -0.43 SS G_CDS: -0.08 Total: -0.51 kcal Total: -71.66 0.37 -71.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165056000.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.896 kcal (2) G-P(sol) polarization free energy of solvation -71.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds