Wall clock time and date at job start Tue Mar 31 2020 22:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34685 * 116.99805 * 2 1 4 4 O 1.21432 * 120.00037 * 0.02562 * 3 2 1 5 5 C 1.48048 * 119.99934 * 180.02562 * 3 2 1 6 6 C 1.39132 * 119.67912 * 180.02562 * 5 3 2 7 7 C 1.38946 * 119.20582 * 179.97438 * 6 5 3 8 8 Cl 1.73600 * 120.72471 * 179.97438 * 7 6 5 9 9 C 1.38435 * 118.55720 * 359.97438 * 7 6 5 10 10 C 1.39421 * 119.27835 * 0.02562 * 9 7 6 11 11 N 1.38985 * 119.61977 * 179.97438 * 10 9 7 12 12 C 1.46961 * 110.99546 * 179.97438 * 11 10 9 13 13 C 1.53059 * 109.36302 * 183.18734 * 12 11 10 14 14 N 1.46952 * 109.36370 * 301.60193 * 13 12 11 15 15 C 1.46906 * 110.99889 * 183.18679 * 14 13 12 16 16 C 1.50701 * 109.46965 * 170.00017 * 15 14 13 17 17 H 1.08005 * 120.00268 * 359.97438 * 16 15 14 18 18 C 1.37875 * 119.99915 * 180.02562 * 16 15 14 19 19 N 1.31520 * 119.99666 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00290 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46970 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47088 * 119.99589 * 20 18 16 23 23 H 1.48494 * 109.47293 * 239.99660 * 20 18 16 24 24 C 1.46961 * 110.88410 * 59.32054 * 14 13 12 25 25 C 1.46955 * 111.00361 * 303.79976 * 11 10 9 26 26 N 1.32078 * 120.75223 * 0.27194 * 10 9 7 27 27 H 1.09006 * 109.47138 * 60.00191 * 1 2 3 28 28 H 1.08997 * 109.47465 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47244 * 299.99992 * 1 2 3 30 30 H 1.07998 * 120.39350 * 359.95009 * 6 5 3 31 31 H 1.07998 * 120.36020 * 179.97438 * 9 7 6 32 32 H 1.09003 * 109.48904 * 63.22366 * 12 11 10 33 33 H 1.08997 * 109.51213 * 303.16652 * 12 11 10 34 34 H 1.08999 * 109.48651 * 181.63251 * 13 12 11 35 35 H 1.08996 * 109.48556 * 61.57139 * 13 12 11 36 36 H 1.08993 * 109.47164 * 289.99960 * 15 14 13 37 37 H 1.08996 * 109.46920 * 49.99994 * 15 14 13 38 38 H 0.97001 * 119.99343 * 180.02562 * 19 18 16 39 39 H 1.09003 * 109.48904 * 60.64354 * 24 14 13 40 40 H 1.09002 * 109.49205 * 180.70887 * 24 14 13 41 41 H 1.09008 * 109.48713 * 296.78316 * 25 11 10 42 42 H 1.09002 * 109.48661 * 56.82278 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0634 1.2001 0.0000 4 8 1.4020 2.2185 0.0005 5 6 3.5419 1.2776 -0.0006 6 6 4.1665 2.5208 0.0000 7 6 5.5546 2.5821 0.0000 8 17 6.3749 4.1121 0.0000 9 6 6.2694 1.3965 0.0000 10 6 5.5799 0.1847 -0.0006 11 7 6.2904 -1.0098 -0.0011 12 6 5.3804 -2.1638 -0.0010 13 6 6.1983 -3.4550 0.0786 14 7 7.1230 -3.5173 -1.0618 15 6 7.8739 -4.7799 -1.0623 16 6 8.6230 -4.9182 -2.3627 17 1 8.5484 -4.1456 -3.1137 18 6 9.4028 -6.0315 -2.5939 19 7 9.4933 -6.9724 -1.6795 20 14 10.3319 -6.2027 -4.2054 21 1 10.0654 -5.0170 -5.0589 22 1 11.7881 -6.2973 -3.9296 23 1 9.8807 -7.4300 -4.9091 24 6 8.0330 -2.3633 -1.0619 25 6 7.2156 -1.0719 -1.1412 26 7 4.2594 0.1590 -0.0065 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 3.5795 3.4273 0.0000 31 1 7.3493 1.4102 -0.0005 32 1 4.7913 -2.1624 -0.9182 33 1 4.7140 -2.1018 0.8592 34 1 5.5268 -4.3131 0.0496 35 1 6.7664 -3.4688 1.0087 36 1 8.5816 -4.7821 -0.2334 37 1 7.1816 -5.6144 -0.9513 38 1 10.0422 -7.7555 -1.8421 39 1 8.6221 -2.3646 -0.1447 40 1 8.6992 -2.4256 -1.9224 41 1 6.6477 -1.0579 -2.0716 42 1 7.8868 -0.2135 -1.1119 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165056082.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:46 Heat of formation + Delta-G solvation = -23.869909 kcal Electronic energy + Delta-G solvation = -26728.285086 eV Core-core repulsion = 22735.216293 eV Total energy + Delta-G solvation = -3993.068792 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.36479 -40.33173 -38.56943 -37.13967 -36.80322 -35.28977 -32.84485 -32.64781 -30.92504 -30.63946 -28.26111 -27.80053 -25.49157 -25.19622 -23.20953 -22.89181 -21.53888 -21.30231 -19.46094 -18.71416 -17.83492 -16.82387 -16.74089 -16.52420 -16.28828 -16.20882 -15.22991 -14.93656 -14.65261 -14.41298 -14.25353 -14.04079 -13.97619 -13.66653 -13.50872 -13.23526 -12.86470 -12.45056 -12.39322 -12.18387 -11.86260 -11.55899 -11.33780 -11.21981 -11.09262 -10.99544 -10.88658 -10.82929 -10.59810 -10.49220 -10.15018 -9.98106 -9.92187 -9.81727 -9.21782 -8.48736 -8.36062 -7.34049 -6.07024 -4.08860 0.06800 0.64580 1.41235 1.99848 2.28173 3.15197 3.28114 3.35974 3.39921 3.43173 3.92420 4.38127 4.39669 4.46343 4.60456 4.81403 4.81703 4.88737 4.90505 5.05257 5.14260 5.25044 5.28944 5.36107 5.46016 5.55463 5.64011 5.70240 5.76348 5.87373 5.93828 6.11604 6.34093 6.45787 6.49524 6.61615 6.95992 7.19306 7.24607 7.28439 7.56622 7.73904 8.01045 8.11385 8.47062 8.98646 9.55821 11.03808 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.013036 B = 0.002709 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2147.372993 B =10332.279663 C =11871.488057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.329 6.329 3 C 0.528 3.472 4 O -0.497 6.497 5 C 0.133 3.867 6 C -0.136 4.136 7 C 0.021 3.979 8 Cl -0.039 7.039 9 C -0.147 4.147 10 C 0.337 3.663 11 N -0.472 5.472 12 C 0.072 3.928 13 C 0.052 3.948 14 N -0.539 5.539 15 C 0.194 3.806 16 C -0.509 4.509 17 H 0.064 0.936 18 C 0.056 3.944 19 N -0.897 5.897 20 Si 0.897 3.103 21 H -0.272 1.272 22 H -0.285 1.285 23 H -0.284 1.284 24 C 0.066 3.934 25 C 0.060 3.940 26 N -0.470 5.470 27 H 0.065 0.935 28 H 0.106 0.894 29 H 0.064 0.936 30 H 0.158 0.842 31 H 0.157 0.843 32 H 0.062 0.938 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.032 0.968 36 H -0.007 1.007 37 H 0.032 0.968 38 H 0.261 0.739 39 H 0.034 0.966 40 H 0.096 0.904 41 H 0.057 0.943 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.162 19.293 5.000 23.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.244 6.244 3 C 0.371 3.629 4 O -0.384 6.384 5 C -0.005 4.005 6 C -0.159 4.159 7 C -0.014 4.014 8 Cl -0.010 7.010 9 C -0.171 4.171 10 C 0.102 3.898 11 N -0.189 5.189 12 C -0.055 4.055 13 C -0.077 4.077 14 N -0.264 5.264 15 C 0.069 3.931 16 C -0.547 4.547 17 H 0.082 0.918 18 C -0.146 4.146 19 N -0.537 5.537 20 Si 0.725 3.275 21 H -0.197 1.197 22 H -0.211 1.211 23 H -0.210 1.210 24 C -0.063 4.063 25 C -0.065 4.065 26 N -0.187 5.187 27 H 0.083 0.917 28 H 0.125 0.875 29 H 0.083 0.917 30 H 0.176 0.824 31 H 0.175 0.825 32 H 0.080 0.920 33 H 0.103 0.897 34 H 0.098 0.902 35 H 0.050 0.950 36 H 0.011 0.989 37 H 0.050 0.950 38 H 0.071 0.929 39 H 0.052 0.948 40 H 0.114 0.886 41 H 0.076 0.924 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -12.651 18.641 5.007 23.079 hybrid contribution 0.945 0.696 -0.539 1.292 sum -11.706 19.338 4.468 23.042 Atomic orbital electron populations 1.23390 0.75744 1.04274 1.02601 1.86708 1.23410 1.31261 1.82998 1.20655 0.87567 0.81947 0.72765 1.90860 1.65775 1.36183 1.45559 1.19636 0.90755 0.88858 1.01229 1.21723 0.92976 0.99089 1.02073 1.20855 0.92141 0.88099 1.00306 1.98414 1.78321 1.27752 1.96486 1.21814 1.02509 0.89852 1.02956 1.19872 0.87085 0.91020 0.91822 1.59336 1.18203 1.00255 1.41120 1.22175 0.93247 0.87289 1.02778 1.22181 0.96159 0.96014 0.93360 1.62324 1.20005 1.04363 1.39721 1.19717 0.91937 0.84728 0.96733 1.21177 1.26850 1.05170 1.01548 0.91825 1.24992 0.96860 0.95758 0.96968 1.69970 1.40239 1.09496 1.33966 0.86454 0.79385 0.78119 0.83532 1.19657 1.21106 1.21011 1.22037 0.94114 0.88157 1.01979 1.22560 0.94264 1.00190 0.89503 1.67698 1.07037 1.30208 1.13771 0.91660 0.87536 0.91687 0.82426 0.82537 0.91988 0.89729 0.90190 0.94963 0.98903 0.95016 0.92929 0.94784 0.88601 0.92429 0.90039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.56 101.05 1.07 1.32 16 2 O -0.33 -3.82 10.38 -40.45 -0.42 -4.24 16 3 C 0.53 6.48 7.95 34.75 0.28 6.76 16 4 O -0.50 -6.49 16.10 -19.21 -0.31 -6.80 16 5 C 0.13 1.63 6.74 -83.05 -0.56 1.07 16 6 C -0.14 -1.43 9.45 -38.99 -0.37 -1.79 16 7 C 0.02 0.21 6.36 -39.25 -0.25 -0.04 16 8 Cl -0.04 -0.34 29.01 -51.86 -1.50 -1.84 16 9 C -0.15 -1.58 9.03 -39.07 -0.35 -1.93 16 10 C 0.34 4.38 6.41 -155.20 -0.99 3.38 16 11 N -0.47 -6.71 4.73 -173.03 -0.82 -7.53 16 12 C 0.07 1.08 4.78 -3.76 -0.02 1.06 16 13 C 0.05 0.90 5.61 -3.77 -0.02 0.88 16 14 N -0.54 -11.04 4.70 -235.91 -1.11 -12.15 16 15 C 0.19 4.86 4.72 -4.97 -0.02 4.83 16 16 C -0.51 -13.76 8.47 -34.44 -0.29 -14.05 16 17 H 0.06 1.69 7.13 -52.48 -0.37 1.32 16 18 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 19 N -0.90 -26.10 13.29 55.43 0.74 -25.37 16 20 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 21 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 24 C 0.07 1.18 5.43 -3.77 -0.02 1.16 16 25 C 0.06 0.85 5.37 -3.77 -0.02 0.83 16 26 N -0.47 -6.33 8.45 -9.03 -0.08 -6.41 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.16 1.45 7.63 -52.49 -0.40 1.05 16 31 H 0.16 1.43 7.17 -52.49 -0.38 1.05 16 32 H 0.06 1.00 8.04 -51.93 -0.42 0.58 16 33 H 0.08 1.21 7.83 -51.93 -0.41 0.81 16 34 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 35 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 36 H -0.01 -0.18 8.12 -51.93 -0.42 -0.61 16 37 H 0.03 0.85 8.03 -51.93 -0.42 0.44 16 38 H 0.26 7.17 8.31 -40.82 -0.34 6.84 16 39 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.10 1.82 6.79 -51.93 -0.35 1.46 16 41 H 0.06 0.85 8.14 -51.92 -0.42 0.43 16 42 H 0.08 0.93 6.78 -51.93 -0.35 0.58 16 LS Contribution 366.60 15.07 5.52 5.52 Total: -1.00 -30.42 366.60 -10.28 -40.70 By element: Atomic # 1 Polarization: 2.73 SS G_CDS: -5.61 Total: -2.88 kcal Atomic # 6 Polarization: 6.59 SS G_CDS: -1.67 Total: 4.92 kcal Atomic # 7 Polarization: -50.19 SS G_CDS: -1.27 Total: -51.45 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: -0.73 Total: -11.04 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 17 Polarization: -0.34 SS G_CDS: -1.50 Total: -1.84 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.42 -10.28 -40.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165056082.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.832 kcal (2) G-P(sol) polarization free energy of solvation -30.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds