Wall clock time and date at job start Tue Mar 31 2020 22:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34685 * 116.99805 * 2 1 4 4 O 1.21432 * 120.00037 * 0.02562 * 3 2 1 5 5 C 1.48048 * 119.99934 * 180.02562 * 3 2 1 6 6 C 1.39132 * 119.67912 * 180.02562 * 5 3 2 7 7 C 1.38946 * 119.20582 * 179.97438 * 6 5 3 8 8 Cl 1.73600 * 120.72471 * 179.97438 * 7 6 5 9 9 C 1.38435 * 118.55720 * 359.97438 * 7 6 5 10 10 C 1.39421 * 119.27835 * 0.02562 * 9 7 6 11 11 N 1.38985 * 119.61977 * 179.97438 * 10 9 7 12 12 C 1.46961 * 110.99546 * 179.97438 * 11 10 9 13 13 C 1.53059 * 109.36302 * 183.18734 * 12 11 10 14 14 N 1.46952 * 109.36370 * 301.60193 * 13 12 11 15 15 C 1.46906 * 110.99889 * 183.18679 * 14 13 12 16 16 C 1.50701 * 109.46965 * 170.00017 * 15 14 13 17 17 H 1.08005 * 120.00268 * 359.97438 * 16 15 14 18 18 C 1.37875 * 119.99915 * 180.02562 * 16 15 14 19 19 N 1.31520 * 119.99666 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00290 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.46970 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47088 * 119.99589 * 20 18 16 23 23 H 1.48494 * 109.47293 * 239.99660 * 20 18 16 24 24 C 1.46961 * 110.88410 * 59.32054 * 14 13 12 25 25 C 1.46955 * 111.00361 * 303.79976 * 11 10 9 26 26 N 1.32078 * 120.75223 * 0.27194 * 10 9 7 27 27 H 1.09006 * 109.47138 * 60.00191 * 1 2 3 28 28 H 1.08997 * 109.47465 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47244 * 299.99992 * 1 2 3 30 30 H 1.07998 * 120.39350 * 359.95009 * 6 5 3 31 31 H 1.07998 * 120.36020 * 179.97438 * 9 7 6 32 32 H 1.09003 * 109.48904 * 63.22366 * 12 11 10 33 33 H 1.08997 * 109.51213 * 303.16652 * 12 11 10 34 34 H 1.08999 * 109.48651 * 181.63251 * 13 12 11 35 35 H 1.08996 * 109.48556 * 61.57139 * 13 12 11 36 36 H 1.08993 * 109.47164 * 289.99960 * 15 14 13 37 37 H 1.08996 * 109.46920 * 49.99994 * 15 14 13 38 38 H 0.97001 * 119.99343 * 180.02562 * 19 18 16 39 39 H 1.09003 * 109.48904 * 60.64354 * 24 14 13 40 40 H 1.09002 * 109.49205 * 180.70887 * 24 14 13 41 41 H 1.09008 * 109.48713 * 296.78316 * 25 11 10 42 42 H 1.09002 * 109.48661 * 56.82278 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0634 1.2001 0.0000 4 8 1.4020 2.2185 0.0005 5 6 3.5419 1.2776 -0.0006 6 6 4.1665 2.5208 0.0000 7 6 5.5546 2.5821 0.0000 8 17 6.3749 4.1121 0.0000 9 6 6.2694 1.3965 0.0000 10 6 5.5799 0.1847 -0.0006 11 7 6.2904 -1.0098 -0.0011 12 6 5.3804 -2.1638 -0.0010 13 6 6.1983 -3.4550 0.0786 14 7 7.1230 -3.5173 -1.0618 15 6 7.8739 -4.7799 -1.0623 16 6 8.6230 -4.9182 -2.3627 17 1 8.5484 -4.1456 -3.1137 18 6 9.4028 -6.0315 -2.5939 19 7 9.4933 -6.9724 -1.6795 20 14 10.3319 -6.2027 -4.2054 21 1 10.0654 -5.0170 -5.0589 22 1 11.7881 -6.2973 -3.9296 23 1 9.8807 -7.4300 -4.9091 24 6 8.0330 -2.3633 -1.0619 25 6 7.2156 -1.0719 -1.1412 26 7 4.2594 0.1590 -0.0065 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 3.5795 3.4273 0.0000 31 1 7.3493 1.4102 -0.0005 32 1 4.7913 -2.1624 -0.9182 33 1 4.7140 -2.1018 0.8592 34 1 5.5268 -4.3131 0.0496 35 1 6.7664 -3.4688 1.0087 36 1 8.5816 -4.7821 -0.2334 37 1 7.1816 -5.6144 -0.9513 38 1 10.0422 -7.7555 -1.8421 39 1 8.6221 -2.3646 -0.1447 40 1 8.6992 -2.4256 -1.9224 41 1 6.6477 -1.0579 -2.0716 42 1 7.8868 -0.2135 -1.1119 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165056082.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:45 Heat of formation + Delta-G solvation = -42.933116 kcal Electronic energy + Delta-G solvation = -26729.111729 eV Core-core repulsion = 22735.216293 eV Total energy + Delta-G solvation = -3993.895435 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.30205 -41.28218 -39.78440 -37.94264 -37.70162 -36.69899 -34.61389 -33.73461 -32.09266 -31.93168 -29.54941 -28.89276 -26.98408 -26.22663 -24.43600 -24.18456 -23.09866 -22.28757 -20.83093 -19.60872 -18.84329 -18.43704 -17.71914 -17.59289 -17.31261 -17.26997 -16.62858 -16.24104 -15.90021 -15.72408 -15.55180 -15.28895 -15.13558 -14.81067 -14.68290 -14.26241 -14.00711 -13.66717 -13.50096 -13.26480 -13.07236 -13.04458 -12.76384 -12.58265 -12.35088 -12.29802 -12.17873 -12.10196 -12.05504 -11.86364 -11.63328 -11.29022 -11.12279 -10.90901 -10.71919 -10.60264 -9.41393 -9.04754 -8.18741 -6.28690 -0.81275 -0.23105 0.62859 1.09197 1.43199 1.44422 1.48736 1.57302 2.17152 2.42049 2.48971 2.99674 3.13902 3.26120 3.56417 3.57042 3.69719 3.93552 4.02810 4.09553 4.14001 4.25523 4.31854 4.33012 4.35505 4.41966 4.58703 4.66210 4.70632 4.78080 4.87301 4.93916 4.98254 5.05965 5.11385 5.21935 5.26652 5.48721 5.66291 5.88379 6.05627 6.30117 6.31620 6.59461 6.65213 6.87499 7.41284 8.92673 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.013036 B = 0.002709 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2147.372993 B =10332.279663 C =11871.488057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.344 6.344 3 C 0.529 3.471 4 O -0.511 6.511 5 C 0.117 3.883 6 C -0.123 4.123 7 C 0.024 3.976 8 Cl -0.020 7.020 9 C -0.136 4.136 10 C 0.322 3.678 11 N -0.477 5.477 12 C 0.088 3.912 13 C 0.054 3.946 14 N -0.546 5.546 15 C 0.209 3.791 16 C -0.520 4.520 17 H 0.066 0.934 18 C 0.001 3.999 19 N -0.935 5.935 20 Si 0.968 3.032 21 H -0.261 1.261 22 H -0.279 1.279 23 H -0.282 1.282 24 C 0.067 3.933 25 C 0.071 3.929 26 N -0.487 5.487 27 H 0.069 0.931 28 H 0.129 0.871 29 H 0.071 0.929 30 H 0.171 0.829 31 H 0.177 0.823 32 H 0.052 0.948 33 H 0.094 0.906 34 H 0.077 0.923 35 H 0.027 0.973 36 H -0.036 1.036 37 H 0.004 0.996 38 H 0.264 0.736 39 H 0.028 0.972 40 H 0.083 0.917 41 H 0.052 0.948 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.120 21.538 4.274 25.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.259 6.259 3 C 0.372 3.628 4 O -0.399 6.399 5 C -0.020 4.020 6 C -0.145 4.145 7 C -0.011 4.011 8 Cl 0.009 6.991 9 C -0.160 4.160 10 C 0.087 3.913 11 N -0.194 5.194 12 C -0.039 4.039 13 C -0.075 4.075 14 N -0.271 5.271 15 C 0.083 3.917 16 C -0.559 4.559 17 H 0.084 0.916 18 C -0.197 4.197 19 N -0.576 5.576 20 Si 0.793 3.207 21 H -0.185 1.185 22 H -0.205 1.205 23 H -0.207 1.207 24 C -0.062 4.062 25 C -0.054 4.054 26 N -0.204 5.204 27 H 0.088 0.912 28 H 0.147 0.853 29 H 0.089 0.911 30 H 0.189 0.811 31 H 0.194 0.806 32 H 0.070 0.930 33 H 0.112 0.888 34 H 0.095 0.905 35 H 0.045 0.955 36 H -0.018 1.018 37 H 0.022 0.978 38 H 0.073 0.927 39 H 0.046 0.954 40 H 0.101 0.899 41 H 0.071 0.929 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -12.637 20.923 4.287 24.817 hybrid contribution 0.856 0.081 -0.260 0.898 sum -11.782 21.004 4.027 24.417 Atomic orbital electron populations 1.23689 0.73805 1.06023 1.03133 1.86691 1.25454 1.31052 1.82681 1.20704 0.87686 0.81986 0.72409 1.90843 1.66069 1.36515 1.46484 1.19741 0.90795 0.89173 1.02303 1.21899 0.93392 0.98957 1.00255 1.20866 0.91970 0.88718 0.99583 1.98429 1.77906 1.26448 1.96318 1.21957 1.03412 0.89107 1.01486 1.19835 0.87113 0.91004 0.93329 1.59339 1.18257 1.00469 1.41357 1.21917 0.92783 0.86541 1.02657 1.22202 0.95635 0.97651 0.91991 1.62235 1.20159 1.03402 1.41352 1.19349 0.90842 0.86322 0.95181 1.21485 1.26980 1.05287 1.02119 0.91561 1.25907 0.97801 0.95359 1.00586 1.70099 1.41190 1.10153 1.36135 0.85343 0.77925 0.78321 0.79081 1.18455 1.20502 1.20742 1.22024 0.94222 0.88895 1.01024 1.22448 0.94374 0.99103 0.89467 1.67575 1.07499 1.31184 1.14159 0.91231 0.85266 0.91065 0.81129 0.80606 0.92953 0.88820 0.90490 0.95465 1.01803 0.97805 0.92742 0.95415 0.89898 0.92938 0.86509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.56 113.37 1.20 1.57 16 2 O -0.34 -7.72 10.38 -55.94 -0.58 -8.30 16 3 C 0.53 12.50 7.95 70.43 0.56 13.06 16 4 O -0.51 -12.82 16.10 20.06 0.32 -12.50 16 5 C 0.12 2.71 6.74 41.80 0.28 2.99 16 6 C -0.12 -2.31 9.45 22.65 0.21 -2.09 16 7 C 0.02 0.41 6.36 22.49 0.14 0.55 16 8 Cl -0.02 -0.29 29.01 -2.72 -0.08 -0.37 16 9 C -0.14 -2.54 9.03 22.60 0.20 -2.34 16 10 C 0.32 7.77 6.41 133.23 0.85 8.62 16 11 N -0.48 -12.91 4.73 -701.36 -3.32 -16.23 16 12 C 0.09 2.63 4.78 86.31 0.41 3.04 16 13 C 0.05 1.92 5.61 86.31 0.48 2.40 16 14 N -0.55 -22.92 4.70 -900.28 -4.23 -27.15 16 15 C 0.21 10.94 4.72 85.56 0.40 11.34 16 16 C -0.52 -28.66 8.47 25.60 0.22 -28.44 16 17 H 0.07 3.54 7.13 -2.91 -0.02 3.52 16 18 C 0.00 0.08 5.46 84.65 0.46 0.54 16 19 N -0.94 -55.61 13.29 21.45 0.28 -55.32 16 20 Si 0.97 43.31 29.54 68.60 2.03 45.33 16 21 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 22 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 23 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 24 C 0.07 2.38 5.43 86.31 0.47 2.85 16 25 C 0.07 1.91 5.37 86.31 0.46 2.37 16 26 N -0.49 -12.53 8.45 -182.47 -1.54 -14.07 16 27 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 28 H 0.13 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.17 2.74 7.63 -2.91 -0.02 2.72 16 31 H 0.18 2.55 7.17 -2.91 -0.02 2.53 16 32 H 0.05 1.67 8.04 -2.39 -0.02 1.65 16 33 H 0.09 2.64 7.83 -2.39 -0.02 2.62 16 34 H 0.08 2.74 8.07 -2.39 -0.02 2.72 16 35 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 36 H -0.04 -2.03 8.12 -2.39 -0.02 -2.05 16 37 H 0.00 0.22 8.03 -2.39 -0.02 0.20 16 38 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 39 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.08 3.15 6.79 -2.39 -0.02 3.13 16 41 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 42 H 0.12 2.30 6.78 -2.39 -0.02 2.29 16 Total: -1.00 -66.32 366.60 0.29 -66.03 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: 1.04 Total: 6.11 kcal Atomic # 6 Polarization: 10.11 SS G_CDS: 6.37 Total: 16.47 kcal Atomic # 7 Polarization: -103.97 SS G_CDS: -8.81 Total: -112.77 kcal Atomic # 8 Polarization: -20.54 SS G_CDS: -0.26 Total: -20.80 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.33 kcal Atomic # 17 Polarization: -0.29 SS G_CDS: -0.08 Total: -0.37 kcal Total: -66.32 0.29 -66.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165056082.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.094 kcal (2) G-P(sol) polarization free energy of solvation -66.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds