Wall clock time and date at job start Tue Mar 31 2020 22:04:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34767 * 116.99832 * 2 1 4 4 O 1.21524 * 120.00336 * 0.02562 * 3 2 1 5 5 C 1.47287 * 120.00033 * 179.97438 * 3 2 1 6 6 C 1.40052 * 120.60704 * 5.33670 * 5 3 2 7 7 C 1.38396 * 118.35157 * 180.02562 * 6 5 3 8 8 Cl 1.73599 * 120.25572 * 179.97438 * 7 6 5 9 9 C 1.38498 * 119.49045 * 359.97438 * 7 6 5 10 10 N 1.31852 * 121.21222 * 359.74309 * 9 7 6 11 11 C 1.32412 * 121.79537 * 0.52691 * 10 9 7 12 12 N 1.38275 * 119.81721 * 179.75618 * 11 10 9 13 13 C 1.46956 * 111.00202 * 294.88749 * 12 11 10 14 14 C 1.53049 * 109.38692 * 183.17866 * 13 12 11 15 15 N 1.46963 * 109.35963 * 301.63039 * 14 13 12 16 16 C 1.46904 * 110.99387 * 183.16564 * 15 14 13 17 17 C 1.50693 * 109.47214 * 66.18085 * 16 15 14 18 18 H 1.08006 * 120.00190 * 359.97438 * 17 16 15 19 19 C 1.37880 * 120.00346 * 179.97438 * 17 16 15 20 20 N 1.31512 * 119.99399 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00051 * 179.97438 * 19 17 16 22 22 H 1.48493 * 109.47423 * 0.02562 * 21 19 17 23 23 H 1.48508 * 109.46942 * 120.00398 * 21 19 17 24 24 H 1.48505 * 109.47075 * 239.99792 * 21 19 17 25 25 C 1.46952 * 110.89768 * 59.29092 * 15 14 13 26 26 C 1.46962 * 111.00073 * 58.68731 * 12 11 10 27 27 H 1.09000 * 109.47576 * 60.00397 * 1 2 3 28 28 H 1.09009 * 109.47240 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47794 * 299.99959 * 1 2 3 30 30 H 1.08000 * 120.82297 * 359.97438 * 6 5 3 31 31 H 1.07998 * 119.39116 * 179.97438 * 9 7 6 32 32 H 1.09007 * 109.48658 * 303.15868 * 13 12 11 33 33 H 1.09000 * 109.48630 * 63.19806 * 13 12 11 34 34 H 1.08997 * 109.48766 * 61.57666 * 14 13 12 35 35 H 1.09000 * 109.49079 * 181.63988 * 14 13 12 36 36 H 1.08996 * 109.46958 * 186.17903 * 16 15 14 37 37 H 1.09002 * 109.47193 * 306.17939 * 16 15 14 38 38 H 0.97003 * 119.99777 * 179.97438 * 20 19 17 39 39 H 1.09007 * 109.49164 * 180.72130 * 25 15 14 40 40 H 1.09001 * 109.49569 * 60.65236 * 25 15 14 41 41 H 1.08993 * 109.48538 * 296.77802 * 26 12 11 42 42 H 1.09003 * 109.48985 * 56.82531 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2008 0.0000 4 8 1.4019 2.2200 0.0005 5 6 3.5346 1.2779 0.0006 6 6 4.3096 0.1167 -0.1110 7 6 5.6878 0.2433 -0.1049 8 17 6.6959 -1.1636 -0.2396 9 6 6.2564 1.5009 0.0096 10 7 5.5088 2.5825 0.1081 11 6 4.1862 2.5183 0.1126 12 7 3.4420 3.6785 0.2228 13 6 3.6547 4.3186 1.5284 14 6 2.7561 5.5523 1.6418 15 7 3.0642 6.4818 0.5458 16 6 2.2734 7.7143 0.6631 17 6 2.6970 8.4673 1.8977 18 1 3.4754 8.0699 2.5322 19 6 2.0908 9.6637 2.2175 20 7 1.1432 10.1478 1.4446 21 14 2.6153 10.5967 3.7484 22 1 3.6925 9.8453 4.4413 23 1 3.1188 11.9392 3.3616 24 1 1.4519 10.7478 4.6589 25 6 2.8513 5.8417 -0.7597 26 6 3.7503 4.6081 -0.8728 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3635 0.5138 0.8900 30 1 3.8433 -0.8535 -0.1988 31 1 7.3321 1.5977 0.0147 32 1 3.4078 3.6146 2.3232 33 1 4.6984 4.6192 1.6203 34 1 1.7114 5.2484 1.5776 35 1 2.9337 6.0450 2.5977 36 1 2.4382 8.3366 -0.2165 37 1 1.2156 7.4617 0.7365 38 1 0.7165 10.9894 1.6697 39 1 3.0983 6.5457 -1.5545 40 1 1.8077 5.5407 -0.8515 41 1 4.7949 4.9124 -0.8083 42 1 3.5734 4.1152 -1.8287 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165056457.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:52 Heat of formation + Delta-G solvation = -17.510464 kcal Electronic energy + Delta-G solvation = -27360.396059 eV Core-core repulsion = 23367.603033 eV Total energy + Delta-G solvation = -3992.793026 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.33832 -39.92095 -38.51596 -37.04656 -36.41742 -35.07287 -33.21157 -32.53136 -30.68191 -30.48620 -28.21433 -27.48220 -25.21599 -25.07211 -23.15863 -22.90106 -21.46847 -21.34121 -19.27972 -18.32900 -17.67073 -17.32402 -16.55197 -16.44350 -16.28206 -15.80515 -15.17140 -14.86779 -14.39700 -14.26000 -14.10587 -13.93949 -13.66929 -13.58976 -13.28545 -13.15624 -12.91871 -12.32347 -12.26452 -12.08765 -11.78456 -11.67361 -11.22523 -10.91483 -10.89662 -10.79145 -10.68078 -10.67105 -10.44821 -10.39707 -10.31148 -10.11379 -9.72170 -9.19617 -9.13079 -8.47193 -8.38257 -7.19305 -5.99761 -4.00881 0.08226 0.53662 1.54477 2.35291 2.43639 3.24168 3.32908 3.40201 3.45105 3.47203 4.03205 4.20534 4.31868 4.44958 4.61490 4.93522 4.94753 4.95732 4.99921 5.03481 5.31741 5.35048 5.36318 5.44354 5.51833 5.65862 5.72061 5.85575 5.91984 6.02376 6.16002 6.19089 6.45836 6.63551 6.70650 6.97420 7.20278 7.34581 7.35418 7.40830 7.69760 7.83204 8.11652 8.23412 8.58121 9.06953 9.63196 11.11223 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.015411 B = 0.002839 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.495626 B = 9860.961282 C =10964.006460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.366 6.366 3 C 0.502 3.498 4 O -0.444 6.444 5 C -0.142 4.142 6 C -0.009 4.009 7 C -0.115 4.115 8 Cl -0.049 7.049 9 C 0.162 3.838 10 N -0.495 5.495 11 C 0.372 3.628 12 N -0.478 5.478 13 C 0.068 3.932 14 C 0.071 3.929 15 N -0.537 5.537 16 C 0.194 3.806 17 C -0.506 4.506 18 H 0.063 0.937 19 C 0.054 3.946 20 N -0.898 5.898 21 Si 0.897 3.103 22 H -0.272 1.272 23 H -0.284 1.284 24 H -0.285 1.285 25 C 0.059 3.941 26 C 0.071 3.929 27 H 0.064 0.936 28 H 0.100 0.900 29 H 0.065 0.935 30 H 0.161 0.839 31 H 0.171 0.829 32 H 0.067 0.933 33 H 0.056 0.944 34 H 0.034 0.966 35 H 0.090 0.910 36 H 0.030 0.970 37 H -0.007 1.007 38 H 0.260 0.740 39 H 0.076 0.924 40 H 0.035 0.965 41 H 0.058 0.942 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.056 -25.840 -4.702 26.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.284 6.284 3 C 0.342 3.658 4 O -0.327 6.327 5 C -0.147 4.147 6 C -0.036 4.036 7 C -0.144 4.144 8 Cl -0.020 7.020 9 C 0.001 3.999 10 N -0.207 5.207 11 C 0.144 3.856 12 N -0.202 5.202 13 C -0.058 4.058 14 C -0.058 4.058 15 N -0.263 5.263 16 C 0.069 3.931 17 C -0.544 4.544 18 H 0.082 0.918 19 C -0.147 4.147 20 N -0.538 5.538 21 Si 0.725 3.275 22 H -0.197 1.197 23 H -0.211 1.211 24 H -0.212 1.212 25 C -0.070 4.070 26 C -0.055 4.055 27 H 0.083 0.917 28 H 0.118 0.882 29 H 0.083 0.917 30 H 0.178 0.822 31 H 0.188 0.812 32 H 0.086 0.914 33 H 0.075 0.925 34 H 0.052 0.948 35 H 0.108 0.892 36 H 0.048 0.952 37 H 0.010 0.990 38 H 0.070 0.930 39 H 0.094 0.906 40 H 0.054 0.946 41 H 0.076 0.924 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 6.139 -24.611 -4.656 25.789 hybrid contribution -0.334 -0.382 0.656 0.829 sum 5.806 -24.993 -4.000 25.968 Atomic orbital electron populations 1.23251 0.75713 1.03514 1.02928 1.86504 1.23737 1.32923 1.85201 1.20457 0.88076 0.81955 0.75263 1.91008 1.65376 1.35018 1.41286 1.19852 0.91357 0.93193 1.10321 1.21812 0.91366 0.99436 0.90962 1.21935 0.92344 0.90369 1.09760 1.98393 1.68017 1.39103 1.96475 1.22959 1.01001 0.85528 0.90403 1.68328 1.06727 1.31399 1.14231 1.20180 0.86305 0.91714 0.87444 1.60326 1.50216 1.04145 1.05477 1.22308 1.00329 0.95810 0.87362 1.21965 0.96315 0.90438 0.97085 1.62302 1.58173 1.05941 0.99835 1.19701 0.90502 0.85024 0.97880 1.21197 1.19768 1.05099 1.08366 0.91842 1.24991 0.95112 0.97461 0.97092 1.69974 1.25428 1.20413 1.38002 0.86456 0.78383 0.79751 0.82912 1.19661 1.21051 1.21157 1.22042 0.97293 0.93619 0.94055 1.22196 0.99692 0.92003 0.91646 0.91744 0.88159 0.91664 0.82154 0.81177 0.91449 0.92541 0.94805 0.89152 0.95156 0.98965 0.93017 0.90614 0.94639 0.92393 0.91450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.57 101.05 1.07 1.39 16 2 O -0.37 -3.87 9.90 -40.67 -0.40 -4.27 16 3 C 0.50 6.62 7.88 34.41 0.27 6.89 16 4 O -0.44 -7.31 14.87 -19.28 -0.29 -7.60 16 5 C -0.14 -1.73 5.91 -104.66 -0.62 -2.35 16 6 C -0.01 -0.09 9.52 -38.84 -0.37 -0.46 16 7 C -0.12 -1.00 6.33 -39.43 -0.25 -1.25 16 8 Cl -0.05 -0.36 28.98 -51.86 -1.50 -1.86 16 9 C 0.16 1.57 10.96 -17.45 -0.19 1.38 16 10 N -0.49 -6.43 9.60 -12.16 -0.12 -6.54 16 11 C 0.37 5.23 5.33 -155.17 -0.83 4.41 16 12 N -0.48 -7.82 2.65 -172.80 -0.46 -8.28 16 13 C 0.07 1.16 5.46 -3.77 -0.02 1.14 16 14 C 0.07 1.45 5.43 -3.76 -0.02 1.43 16 15 N -0.54 -11.99 4.70 -235.90 -1.11 -13.09 16 16 C 0.19 5.16 4.72 -4.98 -0.02 5.13 16 17 C -0.51 -14.33 8.47 -34.44 -0.29 -14.62 16 18 H 0.06 1.78 7.13 -52.48 -0.37 1.40 16 19 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 20 N -0.90 -27.00 13.29 55.43 0.74 -26.27 16 21 Si 0.90 21.82 29.54 -169.99 -5.02 16.80 16 22 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 25 C 0.06 1.13 5.61 -3.77 -0.02 1.11 16 26 C 0.07 1.17 5.40 -3.76 -0.02 1.15 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.10 0.49 8.14 -51.92 -0.42 0.07 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.16 1.14 7.71 -52.49 -0.40 0.74 16 31 H 0.17 1.20 8.06 -52.49 -0.42 0.77 16 32 H 0.07 1.06 8.13 -51.93 -0.42 0.64 16 33 H 0.06 1.00 8.01 -51.93 -0.42 0.58 16 34 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.09 1.94 6.79 -51.93 -0.35 1.58 16 36 H 0.03 0.86 8.03 -51.93 -0.42 0.44 16 37 H -0.01 -0.21 8.12 -51.93 -0.42 -0.64 16 38 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 39 H 0.08 1.40 8.07 -51.93 -0.42 0.98 16 40 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.06 0.98 7.90 -51.93 -0.41 0.57 16 42 H 0.07 1.01 8.13 -51.93 -0.42 0.59 16 LS Contribution 366.98 15.07 5.53 5.53 Total: -1.00 -32.38 366.98 -9.77 -42.16 By element: Atomic # 1 Polarization: 2.34 SS G_CDS: -5.73 Total: -3.39 kcal Atomic # 6 Polarization: 8.22 SS G_CDS: -1.41 Total: 6.81 kcal Atomic # 7 Polarization: -53.23 SS G_CDS: -0.95 Total: -54.18 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: -0.69 Total: -11.87 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Atomic # 17 Polarization: -0.36 SS G_CDS: -1.50 Total: -1.86 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.38 -9.77 -42.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165056457.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.647 kcal (2) G-P(sol) polarization free energy of solvation -32.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds