Wall clock time and date at job start Tue Mar 31 2020 22:04:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34767 * 116.99832 * 2 1 4 4 O 1.21524 * 120.00336 * 0.02562 * 3 2 1 5 5 C 1.47287 * 120.00033 * 179.97438 * 3 2 1 6 6 C 1.40052 * 120.60704 * 5.33670 * 5 3 2 7 7 C 1.38396 * 118.35157 * 180.02562 * 6 5 3 8 8 Cl 1.73599 * 120.25572 * 179.97438 * 7 6 5 9 9 C 1.38498 * 119.49045 * 359.97438 * 7 6 5 10 10 N 1.31852 * 121.21222 * 359.74309 * 9 7 6 11 11 C 1.32412 * 121.79537 * 0.52691 * 10 9 7 12 12 N 1.38275 * 119.81721 * 179.75618 * 11 10 9 13 13 C 1.46956 * 111.00202 * 294.88749 * 12 11 10 14 14 C 1.53049 * 109.38692 * 183.17866 * 13 12 11 15 15 N 1.46963 * 109.35963 * 301.63039 * 14 13 12 16 16 C 1.46904 * 110.99387 * 183.16564 * 15 14 13 17 17 C 1.50693 * 109.47214 * 66.18085 * 16 15 14 18 18 H 1.08006 * 120.00190 * 359.97438 * 17 16 15 19 19 C 1.37880 * 120.00346 * 179.97438 * 17 16 15 20 20 N 1.31512 * 119.99399 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00051 * 179.97438 * 19 17 16 22 22 H 1.48493 * 109.47423 * 0.02562 * 21 19 17 23 23 H 1.48508 * 109.46942 * 120.00398 * 21 19 17 24 24 H 1.48505 * 109.47075 * 239.99792 * 21 19 17 25 25 C 1.46952 * 110.89768 * 59.29092 * 15 14 13 26 26 C 1.46962 * 111.00073 * 58.68731 * 12 11 10 27 27 H 1.09000 * 109.47576 * 60.00397 * 1 2 3 28 28 H 1.09009 * 109.47240 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47794 * 299.99959 * 1 2 3 30 30 H 1.08000 * 120.82297 * 359.97438 * 6 5 3 31 31 H 1.07998 * 119.39116 * 179.97438 * 9 7 6 32 32 H 1.09007 * 109.48658 * 303.15868 * 13 12 11 33 33 H 1.09000 * 109.48630 * 63.19806 * 13 12 11 34 34 H 1.08997 * 109.48766 * 61.57666 * 14 13 12 35 35 H 1.09000 * 109.49079 * 181.63988 * 14 13 12 36 36 H 1.08996 * 109.46958 * 186.17903 * 16 15 14 37 37 H 1.09002 * 109.47193 * 306.17939 * 16 15 14 38 38 H 0.97003 * 119.99777 * 179.97438 * 20 19 17 39 39 H 1.09007 * 109.49164 * 180.72130 * 25 15 14 40 40 H 1.09001 * 109.49569 * 60.65236 * 25 15 14 41 41 H 1.08993 * 109.48538 * 296.77802 * 26 12 11 42 42 H 1.09003 * 109.48985 * 56.82531 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2008 0.0000 4 8 1.4019 2.2200 0.0005 5 6 3.5346 1.2779 0.0006 6 6 4.3096 0.1167 -0.1110 7 6 5.6878 0.2433 -0.1049 8 17 6.6959 -1.1636 -0.2396 9 6 6.2564 1.5009 0.0096 10 7 5.5088 2.5825 0.1081 11 6 4.1862 2.5183 0.1126 12 7 3.4420 3.6785 0.2228 13 6 3.6547 4.3186 1.5284 14 6 2.7561 5.5523 1.6418 15 7 3.0642 6.4818 0.5458 16 6 2.2734 7.7143 0.6631 17 6 2.6970 8.4673 1.8977 18 1 3.4754 8.0699 2.5322 19 6 2.0908 9.6637 2.2175 20 7 1.1432 10.1478 1.4446 21 14 2.6153 10.5967 3.7484 22 1 3.6925 9.8453 4.4413 23 1 3.1188 11.9392 3.3616 24 1 1.4519 10.7478 4.6589 25 6 2.8513 5.8417 -0.7597 26 6 3.7503 4.6081 -0.8728 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3635 0.5138 0.8900 30 1 3.8433 -0.8535 -0.1988 31 1 7.3321 1.5977 0.0147 32 1 3.4078 3.6146 2.3232 33 1 4.6984 4.6192 1.6203 34 1 1.7114 5.2484 1.5776 35 1 2.9337 6.0450 2.5977 36 1 2.4382 8.3366 -0.2165 37 1 1.2156 7.4617 0.7365 38 1 0.7165 10.9894 1.6697 39 1 3.0983 6.5457 -1.5545 40 1 1.8077 5.5407 -0.8515 41 1 4.7949 4.9124 -0.8083 42 1 3.5734 4.1152 -1.8287 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165056457.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:51 Heat of formation + Delta-G solvation = -38.022687 kcal Electronic energy + Delta-G solvation = -27361.285536 eV Core-core repulsion = 23367.603033 eV Total energy + Delta-G solvation = -3993.682503 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.30772 -40.89418 -39.84986 -37.85093 -37.37159 -36.57524 -34.60419 -34.07091 -32.01081 -31.83529 -29.60141 -28.63289 -26.90176 -25.89849 -24.66355 -24.21799 -23.17016 -22.30929 -20.80315 -19.23411 -18.63790 -18.51207 -18.36060 -17.45012 -17.33722 -16.87165 -16.50083 -16.37247 -15.91423 -15.66504 -15.48125 -15.12135 -15.06664 -14.71675 -14.30294 -14.17077 -14.11870 -13.96638 -13.45937 -13.22838 -13.02489 -12.97001 -12.74881 -12.55369 -12.39649 -12.31704 -12.20576 -12.10214 -11.75717 -11.74728 -11.60146 -11.25545 -11.16086 -11.01185 -10.62948 -10.03340 -9.67672 -9.08843 -8.20934 -6.31305 -0.79639 -0.27803 0.83621 1.41036 1.41666 1.41915 1.55659 1.59142 2.34195 2.37398 2.40447 3.10646 3.15968 3.24977 3.44628 3.52785 3.68233 3.85356 4.08397 4.16796 4.19427 4.26331 4.32224 4.35906 4.36794 4.39518 4.53464 4.65517 4.69543 4.75657 4.85598 4.92562 4.96316 5.02775 5.18256 5.23974 5.30443 5.62443 5.67595 6.01306 6.04862 6.28298 6.47524 6.56714 6.75068 6.84206 7.38329 8.90856 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.015411 B = 0.002839 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.495626 B = 9860.961282 C =10964.006460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.358 6.358 3 C 0.505 3.495 4 O -0.488 6.488 5 C -0.150 4.150 6 C 0.005 3.995 7 C -0.102 4.102 8 Cl -0.026 7.026 9 C 0.165 3.835 10 N -0.515 5.515 11 C 0.350 3.650 12 N -0.487 5.487 13 C 0.084 3.916 14 C 0.076 3.924 15 N -0.540 5.540 16 C 0.210 3.790 17 C -0.522 4.522 18 H 0.064 0.936 19 C 0.000 4.000 20 N -0.935 5.935 21 Si 0.972 3.028 22 H -0.262 1.262 23 H -0.277 1.277 24 H -0.279 1.279 25 C 0.060 3.940 26 C 0.085 3.915 27 H 0.059 0.941 28 H 0.138 0.862 29 H 0.056 0.944 30 H 0.186 0.814 31 H 0.199 0.801 32 H 0.081 0.919 33 H 0.053 0.947 34 H 0.014 0.986 35 H 0.076 0.924 36 H 0.007 0.993 37 H -0.041 1.041 38 H 0.265 0.735 39 H 0.079 0.921 40 H 0.019 0.981 41 H 0.056 0.944 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.996 -28.455 -4.155 29.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.275 6.275 3 C 0.348 3.652 4 O -0.374 6.374 5 C -0.156 4.156 6 C -0.021 4.021 7 C -0.131 4.131 8 Cl 0.002 6.998 9 C 0.005 3.995 10 N -0.227 5.227 11 C 0.122 3.878 12 N -0.210 5.210 13 C -0.043 4.043 14 C -0.053 4.053 15 N -0.265 5.265 16 C 0.084 3.916 17 C -0.560 4.560 18 H 0.083 0.917 19 C -0.197 4.197 20 N -0.576 5.576 21 Si 0.796 3.204 22 H -0.186 1.186 23 H -0.203 1.203 24 H -0.204 1.204 25 C -0.069 4.069 26 C -0.042 4.042 27 H 0.078 0.922 28 H 0.156 0.844 29 H 0.075 0.925 30 H 0.203 0.797 31 H 0.215 0.785 32 H 0.100 0.900 33 H 0.072 0.928 34 H 0.033 0.967 35 H 0.095 0.905 36 H 0.025 0.975 37 H -0.024 1.024 38 H 0.073 0.927 39 H 0.097 0.903 40 H 0.038 0.962 41 H 0.074 0.926 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 8.097 -27.285 -4.120 28.758 hybrid contribution -0.903 0.233 0.418 1.022 sum 7.194 -27.053 -3.702 28.237 Atomic orbital electron populations 1.23531 0.74311 1.05793 1.02337 1.86499 1.25054 1.31404 1.84512 1.20702 0.88514 0.82004 0.74026 1.90998 1.66356 1.36472 1.43585 1.19804 0.91041 0.93513 1.11209 1.22021 0.91413 0.99352 0.89335 1.21947 0.92382 0.90857 1.07949 1.98415 1.67332 1.37790 1.96220 1.23399 1.01959 0.85097 0.89084 1.68241 1.06304 1.33092 1.15099 1.20010 0.86880 0.91036 0.89899 1.60171 1.51640 1.04682 1.04539 1.22049 0.98890 0.94471 0.88875 1.21887 0.96141 0.91439 0.95785 1.62246 1.56890 1.05498 1.01850 1.19351 0.89064 0.86651 0.96555 1.21468 1.19951 1.05683 1.08914 0.91736 1.25948 0.94898 0.98382 1.00518 1.70105 1.26510 1.21007 1.39980 0.85294 0.78292 0.78202 0.78580 1.18567 1.20311 1.20432 1.22088 0.97247 0.94988 0.92535 1.22007 0.98419 0.90921 0.92850 0.92224 0.84375 0.92486 0.79690 0.78467 0.90019 0.92825 0.96736 0.90523 0.97538 1.02375 0.92663 0.90256 0.96221 0.92595 0.89719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.57 113.37 1.20 1.70 16 2 O -0.36 -6.97 9.90 -56.78 -0.56 -7.53 16 3 C 0.51 12.99 7.88 70.20 0.55 13.55 16 4 O -0.49 -16.42 14.87 19.76 0.29 -16.13 16 5 C -0.15 -3.45 5.91 -19.89 -0.12 -3.57 16 6 C 0.00 0.08 9.52 22.75 0.22 0.29 16 7 C -0.10 -1.45 6.33 22.37 0.14 -1.30 16 8 Cl -0.03 -0.29 28.98 -2.72 -0.08 -0.37 16 9 C 0.16 2.72 10.96 84.75 0.93 3.65 16 10 N -0.52 -12.49 9.60 -192.39 -1.85 -14.34 16 11 C 0.35 9.49 5.33 133.66 0.71 10.21 16 12 N -0.49 -16.03 2.65 -700.61 -1.86 -17.89 16 13 C 0.08 2.91 5.46 86.31 0.47 3.38 16 14 C 0.08 3.26 5.43 86.31 0.47 3.73 16 15 N -0.54 -25.25 4.70 -900.26 -4.23 -29.48 16 16 C 0.21 11.82 4.72 85.55 0.40 12.22 16 17 C -0.52 -30.50 8.47 25.60 0.22 -30.28 16 18 H 0.06 3.68 7.13 -2.91 -0.02 3.66 16 19 C 0.00 0.02 5.46 84.66 0.46 0.48 16 20 N -0.94 -57.76 13.29 21.45 0.28 -57.47 16 21 Si 0.97 45.17 29.54 68.60 2.03 47.20 16 22 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 23 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 24 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 25 C 0.06 2.42 5.61 86.31 0.48 2.90 16 26 C 0.08 2.82 5.40 86.31 0.47 3.29 16 27 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.14 0.98 8.14 -2.38 -0.02 0.96 16 29 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 30 H 0.19 1.91 7.71 -2.91 -0.02 1.89 16 31 H 0.20 2.06 8.06 -2.91 -0.02 2.04 16 32 H 0.08 2.58 8.13 -2.38 -0.02 2.57 16 33 H 0.05 1.89 8.01 -2.39 -0.02 1.87 16 34 H 0.01 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.08 3.43 6.79 -2.39 -0.02 3.42 16 36 H 0.01 0.39 8.03 -2.39 -0.02 0.37 16 37 H -0.04 -2.56 8.12 -2.39 -0.02 -2.58 16 38 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 39 H 0.08 3.07 8.07 -2.38 -0.02 3.05 16 40 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.06 1.89 7.90 -2.39 -0.02 1.87 16 42 H 0.08 2.52 8.13 -2.39 -0.02 2.50 16 Total: -1.00 -72.64 366.98 1.67 -70.97 By element: Atomic # 1 Polarization: 3.78 SS G_CDS: 1.04 Total: 4.82 kcal Atomic # 6 Polarization: 13.62 SS G_CDS: 6.61 Total: 20.23 kcal Atomic # 7 Polarization: -111.53 SS G_CDS: -7.65 Total: -119.18 kcal Atomic # 8 Polarization: -23.40 SS G_CDS: -0.27 Total: -23.66 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Atomic # 17 Polarization: -0.29 SS G_CDS: -0.08 Total: -0.37 kcal Total: -72.64 1.67 -70.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165056457.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.947 kcal (2) G-P(sol) polarization free energy of solvation -72.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds