Wall clock time and date at job start Tue Mar 31 2020 22:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34776 * 116.99513 * 2 1 4 4 O 1.21528 * 120.00320 * 359.97438 * 3 2 1 5 5 C 1.47224 * 119.99676 * 180.02562 * 3 2 1 6 6 C 1.40114 * 120.59976 * 354.61133 * 5 3 2 7 7 C 1.38200 * 118.37407 * 180.26704 * 6 5 3 8 8 C 1.38601 * 119.51116 * 359.74879 * 7 6 5 9 9 Cl 1.73604 * 119.40276 * 179.97438 * 8 7 6 10 10 N 1.31957 * 121.19943 * 359.97438 * 8 7 6 11 11 C 1.32422 * 121.76243 * 0.02562 * 10 8 7 12 12 N 1.38222 * 119.82712 * 179.97438 * 11 10 8 13 13 C 1.46952 * 110.99657 * 323.85271 * 12 11 10 14 14 C 1.53051 * 109.36183 * 183.18958 * 13 12 11 15 15 N 1.46956 * 109.36407 * 301.59428 * 14 13 12 16 16 C 1.46897 * 111.00009 * 183.18969 * 15 14 13 17 17 C 1.50703 * 109.47131 * 170.00287 * 16 15 14 18 18 H 1.08003 * 119.99978 * 359.97438 * 17 16 15 19 19 C 1.37882 * 119.99831 * 180.02562 * 17 16 15 20 20 N 1.31507 * 120.00215 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99556 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47046 * 90.00407 * 21 19 17 23 23 H 1.48500 * 109.47098 * 210.00013 * 21 19 17 24 24 H 1.48499 * 109.47596 * 330.00115 * 21 19 17 25 25 C 1.46956 * 110.87675 * 59.32208 * 15 14 13 26 26 C 1.46957 * 111.00122 * 87.65214 * 12 11 10 27 27 H 1.09000 * 109.47088 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.47013 * 299.99415 * 1 2 3 29 29 H 1.08994 * 109.47901 * 59.99836 * 1 2 3 30 30 H 1.07992 * 120.81037 * 0.03479 * 6 5 3 31 31 H 1.08009 * 120.24642 * 179.73084 * 7 6 5 32 32 H 1.08993 * 109.49236 * 63.21959 * 13 12 11 33 33 H 1.09005 * 109.51117 * 303.16193 * 13 12 11 34 34 H 1.09007 * 109.48847 * 181.63435 * 14 13 12 35 35 H 1.08997 * 109.49217 * 61.56567 * 14 13 12 36 36 H 1.09006 * 109.47295 * 289.99984 * 16 15 14 37 37 H 1.08993 * 109.47408 * 50.00357 * 16 15 14 38 38 H 0.96998 * 120.00247 * 179.97438 * 20 19 17 39 39 H 1.09005 * 109.49025 * 60.65258 * 25 15 14 40 40 H 1.09006 * 109.48923 * 180.71128 * 25 15 14 41 41 H 1.09005 * 109.48561 * 296.77925 * 26 12 11 42 42 H 1.08999 * 109.48883 * 56.82266 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2009 0.0000 4 8 1.4018 2.2201 -0.0005 5 6 3.5340 1.2780 -0.0006 6 6 4.3092 0.1163 0.1121 7 6 5.6854 0.2425 0.1122 8 6 6.2556 1.5005 -0.0032 9 17 7.9847 1.6558 -0.0022 10 7 5.5082 2.5823 -0.1140 11 6 4.1855 2.5181 -0.1196 12 7 3.4415 3.6770 -0.2372 13 6 4.0845 4.7901 0.4749 14 6 3.1927 6.0309 0.3879 15 7 2.9687 6.3720 -1.0238 16 6 2.1780 7.6036 -1.1488 17 6 2.1759 8.0556 -2.5865 18 1 2.7090 7.4851 -3.3326 19 6 1.4942 9.1979 -2.9490 20 7 0.8454 9.8929 -2.0404 21 14 1.4922 9.7584 -4.7309 22 1 0.3415 9.1450 -5.4415 23 1 1.3753 11.2378 -4.7844 24 1 2.7581 9.3380 -5.3836 25 6 2.3257 5.2588 -1.7359 26 6 3.2174 4.0181 -1.6490 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3635 0.5138 -0.8899 30 1 3.8426 -0.8536 0.2006 31 1 6.3120 -0.6327 0.2019 32 1 5.0508 5.0041 0.0184 33 1 4.2286 4.5185 1.5207 34 1 3.6810 6.8657 0.8906 35 1 2.2362 5.8257 0.8687 36 1 1.1543 7.4126 -0.8265 37 1 2.6163 8.3818 -0.5240 38 1 0.3662 10.6967 -2.2953 39 1 1.3593 5.0448 -1.2794 40 1 2.1819 5.5307 -2.7817 41 1 4.1740 4.2233 -2.1297 42 1 2.7295 3.1831 -2.1517 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165056485.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:55 Heat of formation + Delta-G solvation = -17.220303 kcal Electronic energy + Delta-G solvation = -27493.946050 eV Core-core repulsion = 23501.165606 eV Total energy + Delta-G solvation = -3992.780444 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.33558 -39.89828 -38.52410 -36.99054 -36.40838 -35.14707 -33.14730 -32.52410 -30.81993 -30.49769 -28.21920 -27.48960 -25.25996 -24.85046 -23.09391 -22.99228 -21.39816 -21.37275 -19.29168 -18.22986 -17.78281 -17.33425 -16.58003 -16.44258 -16.27607 -15.63533 -15.22536 -14.74830 -14.40514 -14.27108 -14.17003 -13.94400 -13.80372 -13.52783 -13.31623 -13.08068 -12.93007 -12.21597 -12.09522 -11.93361 -11.76115 -11.65256 -11.24222 -10.96085 -10.89746 -10.79180 -10.70303 -10.60144 -10.46820 -10.41206 -10.32275 -10.09845 -9.72103 -9.39327 -9.13914 -8.43661 -8.35975 -7.19951 -5.99480 -4.00757 0.06998 0.70505 1.37949 2.34359 2.47693 3.24969 3.33815 3.39943 3.44436 3.48545 4.14081 4.35328 4.44185 4.45058 4.69304 4.80293 4.95088 4.95918 5.04322 5.21895 5.31598 5.36271 5.44143 5.44510 5.50527 5.65468 5.76990 5.83486 5.89031 6.02139 6.16936 6.20508 6.45283 6.62330 6.69785 6.87179 7.15063 7.31022 7.36053 7.40394 7.70941 7.82772 8.11400 8.22907 8.57831 9.06578 9.63250 11.11445 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.011614 B = 0.003277 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2410.375524 B = 8542.491321 C =10141.021624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.365 6.365 3 C 0.503 3.497 4 O -0.451 6.451 5 C -0.167 4.167 6 C 0.001 3.999 7 C -0.188 4.188 8 C 0.225 3.775 9 Cl -0.024 7.024 10 N -0.511 5.511 11 C 0.391 3.609 12 N -0.467 5.467 13 C 0.065 3.935 14 C 0.057 3.943 15 N -0.537 5.537 16 C 0.194 3.806 17 C -0.507 4.507 18 H 0.063 0.937 19 C 0.055 3.945 20 N -0.898 5.898 21 Si 0.897 3.103 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.273 1.273 25 C 0.071 3.929 26 C 0.075 3.925 27 H 0.100 0.900 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.161 0.839 31 H 0.153 0.847 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.033 0.967 36 H -0.007 1.007 37 H 0.031 0.969 38 H 0.261 0.739 39 H 0.037 0.963 40 H 0.091 0.909 41 H 0.052 0.948 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.960 -25.247 6.236 26.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.283 6.283 3 C 0.343 3.657 4 O -0.334 6.334 5 C -0.173 4.173 6 C -0.025 4.025 7 C -0.209 4.209 8 C 0.058 3.942 9 Cl 0.004 6.996 10 N -0.226 5.226 11 C 0.160 3.840 12 N -0.188 5.188 13 C -0.062 4.062 14 C -0.072 4.072 15 N -0.263 5.263 16 C 0.069 3.931 17 C -0.545 4.545 18 H 0.081 0.919 19 C -0.146 4.146 20 N -0.538 5.538 21 Si 0.725 3.275 22 H -0.208 1.208 23 H -0.213 1.213 24 H -0.198 1.198 25 C -0.058 4.058 26 C -0.050 4.050 27 H 0.118 0.882 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.179 0.821 31 H 0.171 0.829 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.051 0.949 36 H 0.011 0.989 37 H 0.049 0.951 38 H 0.070 0.930 39 H 0.055 0.945 40 H 0.109 0.891 41 H 0.071 0.929 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.111 -23.852 6.160 25.640 hybrid contribution -0.485 -0.299 -0.683 0.889 sum 6.626 -24.151 5.478 25.636 Atomic orbital electron populations 1.23247 0.75765 1.03479 1.02934 1.86498 1.23684 1.32907 1.85210 1.20488 0.88175 0.81915 0.75080 1.91007 1.65598 1.35051 1.41774 1.19810 0.91370 0.93925 1.12146 1.21839 0.92483 0.98646 0.89499 1.21730 0.95509 0.97198 1.06482 1.21892 0.87755 0.89882 0.94679 1.98434 1.06835 1.98337 1.95973 1.67416 1.06438 1.32288 1.16495 1.19850 0.85010 0.91250 0.87844 1.59970 1.41697 1.02086 1.15038 1.22223 0.97388 0.89221 0.97359 1.22076 0.97990 0.95248 0.91865 1.62310 1.50242 1.04606 1.09110 1.19701 0.90444 0.85217 0.97727 1.21155 1.30933 1.08989 0.93470 0.91925 1.24981 0.95487 0.96525 0.97574 1.69957 1.33584 1.17086 1.33168 0.86515 0.78376 0.77703 0.84928 1.20769 1.21278 1.19786 1.21962 0.94495 0.88444 1.00895 1.22281 1.00254 0.98606 0.83821 0.88185 0.91775 0.91663 0.82142 0.82883 0.91722 0.91228 0.90509 0.94862 0.98948 0.95112 0.92951 0.94470 0.89099 0.92940 0.91217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.57 101.05 1.07 1.38 16 2 O -0.37 -3.76 9.90 -40.70 -0.40 -4.17 16 3 C 0.50 6.56 7.88 34.38 0.27 6.83 16 4 O -0.45 -7.40 14.52 -19.29 -0.28 -7.68 16 5 C -0.17 -2.03 5.91 -104.66 -0.62 -2.65 16 6 C 0.00 0.01 9.73 -38.89 -0.38 -0.37 16 7 C -0.19 -1.52 9.84 -39.46 -0.39 -1.91 16 8 C 0.23 2.49 7.27 -17.36 -0.13 2.37 16 9 Cl -0.02 -0.24 29.10 -51.86 -1.51 -1.75 16 10 N -0.51 -7.14 9.14 -9.29 -0.08 -7.22 16 11 C 0.39 5.65 5.60 -155.21 -0.87 4.78 16 12 N -0.47 -7.76 2.79 -172.82 -0.48 -8.25 16 13 C 0.06 1.10 5.12 -3.77 -0.02 1.08 16 14 C 0.06 1.11 5.61 -3.77 -0.02 1.09 16 15 N -0.54 -12.06 4.70 -235.91 -1.11 -13.17 16 16 C 0.19 5.18 4.72 -4.98 -0.02 5.16 16 17 C -0.51 -14.41 8.47 -34.44 -0.29 -14.70 16 18 H 0.06 1.76 7.13 -52.48 -0.37 1.38 16 19 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 20 N -0.90 -27.04 13.29 55.43 0.74 -26.30 16 21 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 25 C 0.07 1.46 5.43 -3.77 -0.02 1.44 16 26 C 0.08 1.31 5.16 -3.77 -0.02 1.29 16 27 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.16 0.87 7.71 -52.49 -0.40 0.47 16 31 H 0.15 0.75 8.06 -52.48 -0.42 0.32 16 32 H 0.06 1.14 7.69 -51.93 -0.40 0.74 16 33 H 0.07 1.08 8.13 -51.93 -0.42 0.66 16 34 H 0.08 1.43 8.07 -51.93 -0.42 1.01 16 35 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 36 H -0.01 -0.21 8.12 -51.93 -0.42 -0.63 16 37 H 0.03 0.87 8.03 -51.93 -0.42 0.45 16 38 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 39 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.09 1.96 6.79 -51.93 -0.35 1.60 16 41 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.07 1.12 8.09 -51.93 -0.42 0.70 16 LS Contribution 366.01 15.07 5.52 5.52 Total: -1.00 -32.79 366.01 -9.90 -42.69 By element: Atomic # 1 Polarization: 1.93 SS G_CDS: -5.72 Total: -3.79 kcal Atomic # 6 Polarization: 8.82 SS G_CDS: -1.54 Total: 7.28 kcal Atomic # 7 Polarization: -54.00 SS G_CDS: -0.94 Total: -54.94 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: -0.68 Total: -11.84 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Atomic # 17 Polarization: -0.24 SS G_CDS: -1.51 Total: -1.75 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.79 -9.90 -42.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165056485.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.465 kcal (2) G-P(sol) polarization free energy of solvation -32.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds