Wall clock time and date at job start Tue Mar 31 2020 22:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34776 * 116.99513 * 2 1 4 4 O 1.21528 * 120.00320 * 359.97438 * 3 2 1 5 5 C 1.47224 * 119.99676 * 180.02562 * 3 2 1 6 6 C 1.40114 * 120.59976 * 354.61133 * 5 3 2 7 7 C 1.38200 * 118.37407 * 180.26704 * 6 5 3 8 8 C 1.38601 * 119.51116 * 359.74879 * 7 6 5 9 9 Cl 1.73604 * 119.40276 * 179.97438 * 8 7 6 10 10 N 1.31957 * 121.19943 * 359.97438 * 8 7 6 11 11 C 1.32422 * 121.76243 * 0.02562 * 10 8 7 12 12 N 1.38222 * 119.82712 * 179.97438 * 11 10 8 13 13 C 1.46952 * 110.99657 * 323.85271 * 12 11 10 14 14 C 1.53051 * 109.36183 * 183.18958 * 13 12 11 15 15 N 1.46956 * 109.36407 * 301.59428 * 14 13 12 16 16 C 1.46897 * 111.00009 * 183.18969 * 15 14 13 17 17 C 1.50703 * 109.47131 * 170.00287 * 16 15 14 18 18 H 1.08003 * 119.99978 * 359.97438 * 17 16 15 19 19 C 1.37882 * 119.99831 * 180.02562 * 17 16 15 20 20 N 1.31507 * 120.00215 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99556 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47046 * 90.00407 * 21 19 17 23 23 H 1.48500 * 109.47098 * 210.00013 * 21 19 17 24 24 H 1.48499 * 109.47596 * 330.00115 * 21 19 17 25 25 C 1.46956 * 110.87675 * 59.32208 * 15 14 13 26 26 C 1.46957 * 111.00122 * 87.65214 * 12 11 10 27 27 H 1.09000 * 109.47088 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.47013 * 299.99415 * 1 2 3 29 29 H 1.08994 * 109.47901 * 59.99836 * 1 2 3 30 30 H 1.07992 * 120.81037 * 0.03479 * 6 5 3 31 31 H 1.08009 * 120.24642 * 179.73084 * 7 6 5 32 32 H 1.08993 * 109.49236 * 63.21959 * 13 12 11 33 33 H 1.09005 * 109.51117 * 303.16193 * 13 12 11 34 34 H 1.09007 * 109.48847 * 181.63435 * 14 13 12 35 35 H 1.08997 * 109.49217 * 61.56567 * 14 13 12 36 36 H 1.09006 * 109.47295 * 289.99984 * 16 15 14 37 37 H 1.08993 * 109.47408 * 50.00357 * 16 15 14 38 38 H 0.96998 * 120.00247 * 179.97438 * 20 19 17 39 39 H 1.09005 * 109.49025 * 60.65258 * 25 15 14 40 40 H 1.09006 * 109.48923 * 180.71128 * 25 15 14 41 41 H 1.09005 * 109.48561 * 296.77925 * 26 12 11 42 42 H 1.08999 * 109.48883 * 56.82266 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2009 0.0000 4 8 1.4018 2.2201 -0.0005 5 6 3.5340 1.2780 -0.0006 6 6 4.3092 0.1163 0.1121 7 6 5.6854 0.2425 0.1122 8 6 6.2556 1.5005 -0.0032 9 17 7.9847 1.6558 -0.0022 10 7 5.5082 2.5823 -0.1140 11 6 4.1855 2.5181 -0.1196 12 7 3.4415 3.6770 -0.2372 13 6 4.0845 4.7901 0.4749 14 6 3.1927 6.0309 0.3879 15 7 2.9687 6.3720 -1.0238 16 6 2.1780 7.6036 -1.1488 17 6 2.1759 8.0556 -2.5865 18 1 2.7090 7.4851 -3.3326 19 6 1.4942 9.1979 -2.9490 20 7 0.8454 9.8929 -2.0404 21 14 1.4922 9.7584 -4.7309 22 1 0.3415 9.1450 -5.4415 23 1 1.3753 11.2378 -4.7844 24 1 2.7581 9.3380 -5.3836 25 6 2.3257 5.2588 -1.7359 26 6 3.2174 4.0181 -1.6490 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3635 0.5138 -0.8899 30 1 3.8426 -0.8536 0.2006 31 1 6.3120 -0.6327 0.2019 32 1 5.0508 5.0041 0.0184 33 1 4.2286 4.5185 1.5207 34 1 3.6810 6.8657 0.8906 35 1 2.2362 5.8257 0.8687 36 1 1.1543 7.4126 -0.8265 37 1 2.6163 8.3818 -0.5240 38 1 0.3662 10.6967 -2.2953 39 1 1.3593 5.0448 -1.2794 40 1 2.1819 5.5307 -2.7817 41 1 4.1740 4.2233 -2.1297 42 1 2.7295 3.1831 -2.1517 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165056485.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:54 Heat of formation + Delta-G solvation = -38.470147 kcal Electronic energy + Delta-G solvation = -27494.867512 eV Core-core repulsion = 23501.165606 eV Total energy + Delta-G solvation = -3993.701906 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.31660 -40.86352 -39.86749 -37.87309 -37.36588 -36.64258 -34.64316 -33.99257 -32.04911 -31.94358 -29.67788 -28.57284 -26.95148 -25.72853 -24.60287 -24.28599 -23.16508 -22.28058 -20.83702 -19.14232 -18.74340 -18.54731 -18.30158 -17.48254 -17.34732 -16.89438 -16.44444 -16.32813 -15.94461 -15.62663 -15.39151 -15.19784 -15.13815 -14.80385 -14.36898 -14.20178 -13.96637 -13.87994 -13.47808 -13.18608 -12.92160 -12.88070 -12.72689 -12.53900 -12.46844 -12.35918 -12.23523 -12.14622 -11.74929 -11.71051 -11.56762 -11.28621 -11.19765 -11.00658 -10.63303 -10.33992 -9.56469 -9.10648 -8.21462 -6.32076 -0.80722 -0.09332 0.58041 1.40247 1.41354 1.42130 1.53876 1.64196 2.28476 2.39591 2.44553 3.09917 3.18917 3.29562 3.54805 3.63550 3.78213 3.93353 4.03995 4.09118 4.16683 4.26845 4.35681 4.38059 4.38928 4.51087 4.59145 4.68352 4.73958 4.79057 4.85543 4.92458 4.96267 5.11025 5.16000 5.22373 5.33624 5.56339 5.62921 5.96554 6.01837 6.25745 6.40118 6.54949 6.77757 6.82759 7.37483 8.90106 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.011614 B = 0.003277 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2410.375524 B = 8542.491321 C =10141.021624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.354 6.354 3 C 0.505 3.495 4 O -0.495 6.495 5 C -0.174 4.174 6 C 0.020 3.980 7 C -0.161 4.161 8 C 0.209 3.791 9 Cl -0.019 7.019 10 N -0.537 5.537 11 C 0.365 3.635 12 N -0.476 5.476 13 C 0.081 3.919 14 C 0.058 3.942 15 N -0.541 5.541 16 C 0.210 3.790 17 C -0.524 4.524 18 H 0.063 0.937 19 C 0.002 3.998 20 N -0.935 5.935 21 Si 0.972 3.028 22 H -0.272 1.272 23 H -0.281 1.281 24 H -0.264 1.264 25 C 0.077 3.923 26 C 0.092 3.908 27 H 0.139 0.861 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.200 0.800 31 H 0.196 0.804 32 H 0.057 0.943 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.021 0.979 36 H -0.040 1.040 37 H 0.007 0.993 38 H 0.265 0.735 39 H 0.018 0.982 40 H 0.077 0.923 41 H 0.046 0.954 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.231 -28.617 5.619 30.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.271 6.271 3 C 0.348 3.652 4 O -0.382 6.382 5 C -0.180 4.180 6 C -0.005 4.005 7 C -0.182 4.182 8 C 0.043 3.957 9 Cl 0.010 6.990 10 N -0.253 5.253 11 C 0.135 3.865 12 N -0.197 5.197 13 C -0.046 4.046 14 C -0.070 4.070 15 N -0.266 5.266 16 C 0.084 3.916 17 C -0.562 4.562 18 H 0.082 0.918 19 C -0.196 4.196 20 N -0.575 5.575 21 Si 0.796 3.204 22 H -0.197 1.197 23 H -0.206 1.206 24 H -0.189 1.189 25 C -0.051 4.051 26 C -0.033 4.033 27 H 0.157 0.843 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.217 0.783 31 H 0.213 0.787 32 H 0.075 0.925 33 H 0.103 0.897 34 H 0.098 0.902 35 H 0.039 0.961 36 H -0.022 1.022 37 H 0.025 0.975 38 H 0.074 0.926 39 H 0.036 0.964 40 H 0.095 0.905 41 H 0.065 0.935 42 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 8.411 -27.283 5.557 29.086 hybrid contribution -0.840 0.588 -0.410 1.104 sum 7.571 -26.695 5.147 28.221 Atomic orbital electron populations 1.23520 0.74438 1.05776 1.02232 1.86489 1.24889 1.31212 1.84490 1.20730 0.88588 0.82005 0.73853 1.91000 1.66597 1.36595 1.44027 1.19887 0.91190 0.94349 1.12591 1.22268 0.92291 0.98756 0.87206 1.22194 0.95724 0.97208 1.03029 1.22258 0.87964 0.90394 0.95106 1.98438 1.06224 1.98373 1.95949 1.67232 1.06457 1.34201 1.17427 1.19700 0.85371 0.90907 0.90519 1.59876 1.43056 1.02691 1.14106 1.21995 0.95942 0.88327 0.98377 1.22124 0.98049 0.96963 0.89890 1.62249 1.49099 1.03973 1.11261 1.19355 0.88907 0.86588 0.96773 1.21430 1.31264 1.09468 0.94084 0.91839 1.25934 0.94732 0.96423 1.02508 1.70090 1.34220 1.17575 1.35618 0.85351 0.78871 0.77299 0.78907 1.19728 1.20616 1.18857 1.21863 0.94471 0.89322 0.99474 1.21989 0.99004 0.97097 0.85252 0.84302 0.92419 0.92559 0.78275 0.78709 0.92499 0.89653 0.90233 0.96117 1.02249 0.97503 0.92625 0.96393 0.90487 0.93529 0.89904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 10.57 113.37 1.20 1.68 16 2 O -0.35 -6.44 9.90 -56.87 -0.56 -7.00 16 3 C 0.51 12.60 7.88 70.18 0.55 13.15 16 4 O -0.50 -16.50 14.52 19.74 0.29 -16.22 16 5 C -0.17 -3.89 5.91 -19.89 -0.12 -4.01 16 6 C 0.02 0.25 9.73 22.72 0.22 0.48 16 7 C -0.16 -1.89 9.84 22.35 0.22 -1.67 16 8 C 0.21 4.09 7.27 84.76 0.62 4.70 16 9 Cl -0.02 -0.33 29.10 -2.72 -0.08 -0.41 16 10 N -0.54 -14.36 9.14 -183.31 -1.67 -16.03 16 11 C 0.36 10.25 5.60 133.68 0.75 11.00 16 12 N -0.48 -16.09 2.79 -700.67 -1.96 -18.04 16 13 C 0.08 2.79 5.12 86.31 0.44 3.23 16 14 C 0.06 2.38 5.61 86.31 0.48 2.87 16 15 N -0.54 -25.61 4.70 -900.29 -4.23 -29.84 16 16 C 0.21 11.90 4.72 85.56 0.40 12.30 16 17 C -0.52 -30.84 8.47 25.60 0.22 -30.63 16 18 H 0.06 3.65 7.13 -2.91 -0.02 3.63 16 19 C 0.00 0.12 5.46 84.66 0.46 0.58 16 20 N -0.93 -57.85 13.29 21.45 0.28 -57.57 16 21 Si 0.97 45.34 29.54 68.60 2.03 47.37 16 22 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 23 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 24 H -0.26 -11.88 7.11 99.48 0.71 -11.18 16 25 C 0.08 3.36 5.43 86.31 0.47 3.83 16 26 C 0.09 3.29 5.16 86.31 0.45 3.73 16 27 H 0.14 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 29 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.20 0.98 7.71 -2.91 -0.02 0.96 16 31 H 0.20 0.69 8.06 -2.91 -0.02 0.67 16 32 H 0.06 2.05 7.69 -2.39 -0.02 2.03 16 33 H 0.09 2.66 8.13 -2.38 -0.02 2.64 16 34 H 0.08 3.13 8.07 -2.38 -0.02 3.12 16 35 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 36 H -0.04 -2.49 8.12 -2.38 -0.02 -2.51 16 37 H 0.01 0.41 8.03 -2.39 -0.02 0.40 16 38 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 39 H 0.02 0.84 8.14 -2.38 -0.02 0.82 16 40 H 0.08 3.49 6.79 -2.38 -0.02 3.48 16 41 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 42 H 0.08 2.70 8.09 -2.39 -0.02 2.68 16 Total: -1.00 -75.04 366.01 1.49 -73.55 By element: Atomic # 1 Polarization: 1.92 SS G_CDS: 1.04 Total: 2.96 kcal Atomic # 6 Polarization: 14.88 SS G_CDS: 6.36 Total: 21.24 kcal Atomic # 7 Polarization: -113.91 SS G_CDS: -7.58 Total: -121.49 kcal Atomic # 8 Polarization: -22.94 SS G_CDS: -0.28 Total: -23.22 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Atomic # 17 Polarization: -0.33 SS G_CDS: -0.08 Total: -0.41 kcal Total: -75.04 1.49 -73.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165056485.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.076 kcal (2) G-P(sol) polarization free energy of solvation -75.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds