Wall clock time and date at job start Tue Mar 31 2020 22:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34227 * 116.99769 * 2 1 4 4 O 1.20818 * 120.00358 * 0.02562 * 3 2 1 5 5 C 1.50699 * 119.99822 * 180.02562 * 3 2 1 6 6 C 1.50704 * 109.47290 * 179.97438 * 5 3 2 7 7 C 1.38316 * 120.84290 * 271.17765 * 6 5 3 8 8 Cl 1.73606 * 120.41320 * 0.04194 * 7 6 5 9 9 N 1.32655 * 119.16881 * 180.02562 * 7 6 5 10 10 C 1.31791 * 120.98495 * 0.02562 * 9 7 6 11 11 N 1.31742 * 121.84504 * 359.71425 * 10 9 7 12 12 C 1.33031 * 120.72404 * 0.56997 * 11 10 9 13 13 N 1.38557 * 120.52063 * 179.71616 * 12 11 10 14 14 C 1.46843 * 111.00233 * 36.72479 * 13 12 11 15 15 C 1.53039 * 109.52421 * 174.16114 * 14 13 12 16 16 C 1.53119 * 109.27747 * 59.17530 * 15 14 13 17 17 C 1.53117 * 109.16478 * 302.34834 * 16 15 14 18 18 H 1.09002 * 109.49908 * 297.67095 * 17 16 15 19 19 C 1.50695 * 109.50224 * 177.59706 * 17 16 15 20 20 H 1.08006 * 119.99855 * 240.07375 * 19 17 16 21 21 C 1.37882 * 120.00357 * 60.35153 * 19 17 16 22 22 N 1.31512 * 119.99806 * 359.72545 * 21 19 17 23 23 Si 1.86797 * 119.99911 * 179.72284 * 21 19 17 24 24 H 1.48498 * 109.47519 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.46973 * 120.00759 * 23 21 19 26 26 H 1.48502 * 109.47131 * 239.99954 * 23 21 19 27 27 C 1.46854 * 110.99721 * 272.46897 * 13 12 11 28 28 H 1.08997 * 109.46784 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46763 * 299.99342 * 1 2 3 30 30 H 1.08995 * 109.47425 * 59.99507 * 1 2 3 31 31 H 1.09002 * 109.47523 * 60.00348 * 5 3 2 32 32 H 1.09001 * 109.47444 * 300.00072 * 5 3 2 33 33 H 1.08001 * 119.07245 * 180.02562 * 10 9 7 34 34 H 1.08993 * 109.46166 * 54.14221 * 14 13 12 35 35 H 1.08998 * 109.45964 * 294.17358 * 14 13 12 36 36 H 1.09006 * 109.50360 * 299.23791 * 15 14 13 37 37 H 1.09000 * 109.50116 * 179.11935 * 15 14 13 38 38 H 1.09008 * 109.52006 * 182.43853 * 16 15 14 39 39 H 1.09004 * 109.57442 * 62.28630 * 16 15 14 40 40 H 0.97000 * 120.00255 * 179.97438 * 22 21 19 41 41 H 1.09007 * 109.42806 * 65.80601 * 27 13 12 42 42 H 1.08996 * 109.49681 * 305.84496 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 6 3.9936 2.7201 -0.0011 7 6 4.1709 3.4067 -1.1886 8 17 3.9025 2.6149 -2.7101 9 7 4.5481 4.6779 -1.1503 10 6 4.7551 5.2899 -0.0016 11 7 4.5933 4.6754 1.1524 12 6 4.2220 3.3987 1.1964 13 7 4.0586 2.7550 2.4124 14 6 3.4894 3.6629 3.4164 15 6 3.1883 2.8836 4.6986 16 6 4.4825 2.2571 5.2251 17 6 5.0803 1.3540 4.1427 18 1 4.3861 0.5433 3.9210 19 6 6.3851 0.7795 4.6311 20 1 7.2989 0.9799 4.0914 21 6 6.4115 -0.0065 5.7636 22 7 5.2988 -0.2505 6.4207 23 14 8.0278 -0.7248 6.3644 24 1 9.1244 -0.3050 5.4555 25 1 8.3072 -0.2343 7.7379 26 1 7.9363 -2.2070 6.3773 27 6 5.3264 2.1768 2.8762 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 3.9558 0.7810 -0.8908 32 1 3.9565 0.7806 0.8891 33 1 5.0613 6.3256 -0.0065 34 1 2.5675 4.0984 3.0310 35 1 4.2032 4.4575 3.6335 36 1 2.4641 2.0974 4.4850 37 1 2.7804 3.5610 5.4488 38 1 4.2651 1.6653 6.1143 39 1 5.1934 3.0443 5.4763 40 1 5.3172 -0.8037 7.2173 41 1 6.0319 2.9784 3.0952 42 1 5.7384 1.5330 2.0992 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166740372.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:41 Heat of formation + Delta-G solvation = -37.264679 kcal Electronic energy + Delta-G solvation = -28133.716122 eV Core-core repulsion = 24140.066489 eV Total energy + Delta-G solvation = -3993.649633 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.49781 -40.21178 -38.45764 -37.05410 -36.49007 -34.64061 -33.73652 -32.74127 -31.09300 -30.08247 -29.00089 -27.13405 -25.13109 -24.85823 -23.69691 -22.25698 -21.53180 -20.90495 -19.00646 -18.07681 -17.81627 -17.65168 -16.63972 -16.42095 -16.23117 -15.26874 -15.14796 -14.60225 -14.55242 -14.43721 -14.13218 -13.70233 -13.52775 -13.41999 -12.95008 -12.65860 -12.58252 -12.36928 -12.15862 -12.08061 -11.89487 -11.61189 -11.04207 -10.98772 -10.87110 -10.82820 -10.78430 -10.52933 -10.38969 -10.23045 -9.94501 -9.72400 -9.61509 -9.41330 -9.19283 -8.87614 -8.43617 -8.25479 -6.07805 -4.14826 0.63667 0.83993 1.43365 2.28914 2.75105 3.24820 3.33625 3.36420 3.55521 3.64548 4.02811 4.30106 4.37374 4.49395 4.74657 4.84171 5.06412 5.07805 5.16105 5.23086 5.43270 5.49196 5.51158 5.67622 5.69849 5.85304 5.95565 6.09374 6.18506 6.32185 6.39616 6.49191 6.57799 6.66317 6.75292 6.96707 7.19695 7.27653 7.49402 7.65405 7.79101 7.87905 7.92492 8.02550 8.31803 8.88171 9.50544 10.98215 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.011862 B = 0.003893 C = 0.003570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2359.860855 B = 7190.439211 C = 7841.643012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.356 6.356 3 C 0.477 3.523 4 O -0.503 6.503 5 C -0.063 4.063 6 C -0.155 4.155 7 C 0.240 3.760 8 Cl -0.016 7.016 9 N -0.531 5.531 10 C 0.331 3.669 11 N -0.546 5.546 12 C 0.394 3.606 13 N -0.487 5.487 14 C 0.070 3.930 15 C -0.118 4.118 16 C -0.113 4.113 17 C 0.057 3.943 18 H 0.038 0.962 19 C -0.517 4.517 20 H 0.056 0.944 21 C 0.066 3.934 22 N -0.886 5.886 23 Si 0.891 3.109 24 H -0.274 1.274 25 H -0.284 1.284 26 H -0.284 1.284 27 C 0.072 3.928 28 H 0.101 0.899 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.116 0.884 32 H 0.139 0.861 33 H 0.204 0.796 34 H 0.060 0.940 35 H 0.052 0.948 36 H 0.061 0.939 37 H 0.054 0.946 38 H 0.095 0.905 39 H 0.035 0.965 40 H 0.261 0.739 41 H 0.040 0.960 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.086 4.047 -13.465 15.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.272 6.272 3 C 0.319 3.681 4 O -0.390 6.390 5 C -0.102 4.102 6 C -0.163 4.163 7 C 0.068 3.932 8 Cl 0.012 6.988 9 N -0.249 5.249 10 C 0.042 3.958 11 N -0.265 5.265 12 C 0.156 3.844 13 N -0.209 5.209 14 C -0.057 4.057 15 C -0.156 4.156 16 C -0.151 4.151 17 C 0.038 3.962 18 H 0.056 0.944 19 C -0.556 4.556 20 H 0.074 0.926 21 C -0.136 4.136 22 N -0.524 5.524 23 Si 0.719 3.281 24 H -0.198 1.198 25 H -0.210 1.210 26 H -0.210 1.210 27 C -0.052 4.052 28 H 0.119 0.881 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.134 0.866 32 H 0.156 0.844 33 H 0.220 0.780 34 H 0.078 0.922 35 H 0.070 0.930 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.113 0.887 39 H 0.054 0.946 40 H 0.071 0.929 41 H 0.058 0.942 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.462 4.717 -13.465 15.663 hybrid contribution 0.830 -0.477 0.288 0.999 sum -5.632 4.241 -13.177 14.945 Atomic orbital electron populations 1.23247 0.76361 1.03599 1.02459 1.86499 1.23364 1.33134 1.84223 1.23268 0.91326 0.81433 0.72047 1.90655 1.67006 1.36346 1.45026 1.20047 0.89035 0.93139 1.07972 1.20300 1.06327 0.97897 0.91760 1.21678 0.93978 0.90266 0.87281 1.98411 1.93885 1.77119 1.29373 1.67826 1.16528 1.08466 1.32035 1.24783 0.90098 0.99848 0.81098 1.68691 1.15354 1.11348 1.31066 1.20244 0.85204 0.86972 0.92012 1.59930 1.28332 1.31943 1.00695 1.22045 0.98290 0.93612 0.91706 1.21722 1.00640 0.98953 0.94274 1.21696 0.92905 0.98131 1.02326 1.18710 0.96827 0.92831 0.87794 0.94395 1.21079 0.93322 1.30713 1.10502 0.92622 1.24904 0.96230 0.95960 0.96473 1.69886 1.26023 1.38083 1.18392 0.86550 0.83932 0.78904 0.78693 1.19815 1.21029 1.20965 1.22576 0.84925 0.97700 0.99986 0.88103 0.91760 0.92157 0.86567 0.84352 0.77962 0.92163 0.93006 0.92047 0.92711 0.88717 0.94644 0.92944 0.94178 0.91637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.38 10.56 101.05 1.07 1.45 16 2 O -0.36 -4.77 10.57 -39.25 -0.41 -5.18 16 3 C 0.48 7.09 7.95 36.01 0.29 7.38 16 4 O -0.50 -8.68 15.78 -18.74 -0.30 -8.98 16 5 C -0.06 -0.87 5.38 -29.03 -0.16 -1.03 16 6 C -0.15 -2.36 4.43 -104.11 -0.46 -2.82 16 7 C 0.24 3.49 7.32 -17.17 -0.13 3.36 16 8 Cl -0.02 -0.20 27.65 -51.86 -1.43 -1.64 16 9 N -0.53 -7.67 10.43 -11.75 -0.12 -7.79 16 10 C 0.33 4.47 12.28 -92.20 -1.13 3.33 16 11 N -0.55 -8.69 9.41 -13.83 -0.13 -8.82 16 12 C 0.39 6.60 5.57 -154.76 -0.86 5.73 16 13 N -0.49 -8.71 3.76 -173.08 -0.65 -9.36 16 14 C 0.07 1.24 4.95 -3.84 -0.02 1.22 16 15 C -0.12 -2.19 6.09 -26.65 -0.16 -2.35 16 16 C -0.11 -2.49 5.03 -26.61 -0.13 -2.62 16 17 C 0.06 1.32 2.26 -91.70 -0.21 1.11 16 18 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 19 C -0.52 -13.23 8.56 -34.44 -0.29 -13.53 16 20 H 0.06 1.41 7.74 -52.48 -0.41 1.01 16 21 C 0.07 1.73 5.31 -17.82 -0.09 1.64 16 22 N -0.89 -23.91 11.36 55.43 0.63 -23.28 16 23 Si 0.89 20.32 29.54 -169.99 -5.02 15.30 16 24 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 27 C 0.07 1.41 4.33 -3.83 -0.02 1.40 16 28 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 30 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 31 H 0.12 1.28 7.07 -51.93 -0.37 0.92 16 32 H 0.14 1.97 6.89 -51.93 -0.36 1.61 16 33 H 0.20 1.90 8.06 -52.49 -0.42 1.47 16 34 H 0.06 1.04 8.10 -51.93 -0.42 0.62 16 35 H 0.05 0.93 7.83 -51.93 -0.41 0.52 16 36 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 37 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.09 2.36 6.17 -51.92 -0.32 2.04 16 39 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 41 H 0.04 0.82 8.14 -51.92 -0.42 0.40 16 42 H 0.07 1.23 7.73 -51.93 -0.40 0.83 16 LS Contribution 362.85 15.07 5.47 5.47 Total: -1.00 -29.32 362.85 -9.90 -39.23 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -5.62 Total: 0.78 kcal Atomic # 6 Polarization: 6.58 SS G_CDS: -2.31 Total: 4.26 kcal Atomic # 7 Polarization: -48.98 SS G_CDS: -0.27 Total: -49.25 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: -0.71 Total: -14.16 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Atomic # 17 Polarization: -0.20 SS G_CDS: -1.43 Total: -1.64 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -29.32 -9.90 -39.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166740372.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.962 kcal (2) G-P(sol) polarization free energy of solvation -29.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds