Wall clock time and date at job start Tue Mar 31 2020 22:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34227 * 116.99769 * 2 1 4 4 O 1.20818 * 120.00358 * 0.02562 * 3 2 1 5 5 C 1.50699 * 119.99822 * 180.02562 * 3 2 1 6 6 C 1.50704 * 109.47290 * 179.97438 * 5 3 2 7 7 C 1.38316 * 120.84290 * 271.17765 * 6 5 3 8 8 Cl 1.73606 * 120.41320 * 0.04194 * 7 6 5 9 9 N 1.32655 * 119.16881 * 180.02562 * 7 6 5 10 10 C 1.31791 * 120.98495 * 0.02562 * 9 7 6 11 11 N 1.31742 * 121.84504 * 359.71425 * 10 9 7 12 12 C 1.33031 * 120.72404 * 0.56997 * 11 10 9 13 13 N 1.38557 * 120.52063 * 179.71616 * 12 11 10 14 14 C 1.46843 * 111.00233 * 36.72479 * 13 12 11 15 15 C 1.53039 * 109.52421 * 174.16114 * 14 13 12 16 16 C 1.53119 * 109.27747 * 59.17530 * 15 14 13 17 17 C 1.53117 * 109.16478 * 302.34834 * 16 15 14 18 18 H 1.09002 * 109.49908 * 297.67095 * 17 16 15 19 19 C 1.50695 * 109.50224 * 177.59706 * 17 16 15 20 20 H 1.08006 * 119.99855 * 240.07375 * 19 17 16 21 21 C 1.37882 * 120.00357 * 60.35153 * 19 17 16 22 22 N 1.31512 * 119.99806 * 359.72545 * 21 19 17 23 23 Si 1.86797 * 119.99911 * 179.72284 * 21 19 17 24 24 H 1.48498 * 109.47519 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.46973 * 120.00759 * 23 21 19 26 26 H 1.48502 * 109.47131 * 239.99954 * 23 21 19 27 27 C 1.46854 * 110.99721 * 272.46897 * 13 12 11 28 28 H 1.08997 * 109.46784 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46763 * 299.99342 * 1 2 3 30 30 H 1.08995 * 109.47425 * 59.99507 * 1 2 3 31 31 H 1.09002 * 109.47523 * 60.00348 * 5 3 2 32 32 H 1.09001 * 109.47444 * 300.00072 * 5 3 2 33 33 H 1.08001 * 119.07245 * 180.02562 * 10 9 7 34 34 H 1.08993 * 109.46166 * 54.14221 * 14 13 12 35 35 H 1.08998 * 109.45964 * 294.17358 * 14 13 12 36 36 H 1.09006 * 109.50360 * 299.23791 * 15 14 13 37 37 H 1.09000 * 109.50116 * 179.11935 * 15 14 13 38 38 H 1.09008 * 109.52006 * 182.43853 * 16 15 14 39 39 H 1.09004 * 109.57442 * 62.28630 * 16 15 14 40 40 H 0.97000 * 120.00255 * 179.97438 * 22 21 19 41 41 H 1.09007 * 109.42806 * 65.80601 * 27 13 12 42 42 H 1.08996 * 109.49681 * 305.84496 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 6 3.9936 2.7201 -0.0011 7 6 4.1709 3.4067 -1.1886 8 17 3.9025 2.6149 -2.7101 9 7 4.5481 4.6779 -1.1503 10 6 4.7551 5.2899 -0.0016 11 7 4.5933 4.6754 1.1524 12 6 4.2220 3.3987 1.1964 13 7 4.0586 2.7550 2.4124 14 6 3.4894 3.6629 3.4164 15 6 3.1883 2.8836 4.6986 16 6 4.4825 2.2571 5.2251 17 6 5.0803 1.3540 4.1427 18 1 4.3861 0.5433 3.9210 19 6 6.3851 0.7795 4.6311 20 1 7.2989 0.9799 4.0914 21 6 6.4115 -0.0065 5.7636 22 7 5.2988 -0.2505 6.4207 23 14 8.0278 -0.7248 6.3644 24 1 9.1244 -0.3050 5.4555 25 1 8.3072 -0.2343 7.7379 26 1 7.9363 -2.2070 6.3773 27 6 5.3264 2.1768 2.8762 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 3.9558 0.7810 -0.8908 32 1 3.9565 0.7806 0.8891 33 1 5.0613 6.3256 -0.0065 34 1 2.5675 4.0984 3.0310 35 1 4.2032 4.4575 3.6335 36 1 2.4641 2.0974 4.4850 37 1 2.7804 3.5610 5.4488 38 1 4.2651 1.6653 6.1143 39 1 5.1934 3.0443 5.4763 40 1 5.3172 -0.8037 7.2173 41 1 6.0319 2.9784 3.0952 42 1 5.7384 1.5330 2.0992 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166740372.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:40 Heat of formation + Delta-G solvation = -52.026877 kcal Electronic energy + Delta-G solvation = -28134.356259 eV Core-core repulsion = 24140.066489 eV Total energy + Delta-G solvation = -3994.289770 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.67679 -41.33257 -39.90808 -38.11972 -37.59697 -36.18330 -34.91943 -34.35803 -32.53747 -31.80989 -30.09561 -28.08116 -26.98459 -26.25018 -24.84629 -23.66419 -23.16929 -22.00103 -20.61690 -19.29279 -19.19285 -18.77049 -18.10387 -17.70049 -17.42902 -16.75763 -16.48203 -16.17944 -15.71727 -15.63319 -15.47281 -15.16882 -14.58712 -14.58530 -14.44065 -14.39788 -14.14741 -13.52166 -13.43096 -13.28169 -12.97120 -12.86907 -12.73101 -12.67695 -12.57731 -12.06720 -11.93691 -11.84111 -11.79383 -11.71065 -11.57813 -11.33302 -11.13417 -10.74832 -10.64858 -10.56907 -10.36739 -9.68726 -8.06908 -6.20099 -0.46993 -0.37004 0.35466 1.14679 1.43287 1.46787 1.56253 1.74354 2.29000 2.46382 2.49234 3.00167 3.13962 3.21921 3.32203 3.60550 3.77024 3.97913 4.10036 4.16335 4.28601 4.31468 4.33741 4.40772 4.48757 4.55524 4.61594 4.71673 4.78907 4.83863 4.92065 4.99247 5.08511 5.24887 5.34021 5.45565 5.52902 5.65665 5.74361 5.98955 6.06117 6.13553 6.38353 6.68195 6.77515 6.90090 7.48092 8.98072 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.011862 B = 0.003893 C = 0.003570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2359.860855 B = 7190.439211 C = 7841.643012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.361 6.361 3 C 0.478 3.522 4 O -0.531 6.531 5 C -0.063 4.063 6 C -0.160 4.160 7 C 0.235 3.765 8 Cl 0.004 6.996 9 N -0.534 5.534 10 C 0.333 3.667 11 N -0.560 5.560 12 C 0.376 3.624 13 N -0.489 5.489 14 C 0.078 3.922 15 C -0.108 4.108 16 C -0.105 4.105 17 C 0.058 3.942 18 H 0.010 0.990 19 C -0.532 4.532 20 H 0.053 0.947 21 C 0.021 3.979 22 N -0.912 5.912 23 Si 0.950 3.050 24 H -0.268 1.268 25 H -0.284 1.284 26 H -0.281 1.281 27 C 0.090 3.910 28 H 0.133 0.867 29 H 0.055 0.945 30 H 0.067 0.933 31 H 0.142 0.858 32 H 0.131 0.869 33 H 0.243 0.757 34 H 0.068 0.932 35 H 0.050 0.950 36 H 0.053 0.947 37 H 0.075 0.925 38 H 0.064 0.936 39 H 0.027 0.973 40 H 0.261 0.739 41 H 0.030 0.970 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.865 4.511 -14.898 16.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.277 6.277 3 C 0.322 3.678 4 O -0.420 6.420 5 C -0.101 4.101 6 C -0.167 4.167 7 C 0.063 3.937 8 Cl 0.033 6.967 9 N -0.251 5.251 10 C 0.045 3.955 11 N -0.279 5.279 12 C 0.138 3.862 13 N -0.211 5.211 14 C -0.048 4.048 15 C -0.146 4.146 16 C -0.143 4.143 17 C 0.039 3.961 18 H 0.028 0.972 19 C -0.571 4.571 20 H 0.071 0.929 21 C -0.178 4.178 22 N -0.551 5.551 23 Si 0.776 3.224 24 H -0.193 1.193 25 H -0.210 1.210 26 H -0.207 1.207 27 C -0.035 4.035 28 H 0.151 0.849 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.160 0.840 32 H 0.149 0.851 33 H 0.259 0.741 34 H 0.086 0.914 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.094 0.906 38 H 0.083 0.917 39 H 0.046 0.954 40 H 0.070 0.930 41 H 0.049 0.951 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.244 5.178 -14.917 16.979 hybrid contribution 0.711 -0.622 0.644 1.143 sum -5.533 4.556 -14.273 15.971 Atomic orbital electron populations 1.23550 0.74640 1.05743 1.02423 1.86492 1.25111 1.32339 1.83735 1.23437 0.91668 0.81422 0.71262 1.90637 1.67652 1.37223 1.46514 1.20099 0.88562 0.92634 1.08796 1.20382 1.06285 0.98496 0.91584 1.21883 0.93394 0.90435 0.87971 1.98416 1.93672 1.76765 1.27865 1.67953 1.16407 1.08372 1.32371 1.25574 0.88750 1.01085 0.80126 1.68674 1.15831 1.11047 1.32346 1.20222 0.86651 0.87701 0.91662 1.59798 1.27398 1.32626 1.01293 1.21938 0.98548 0.93227 0.91119 1.21599 0.98494 0.99071 0.95394 1.21499 0.94433 0.97369 1.00989 1.18584 0.95211 0.92651 0.89646 0.97169 1.21417 0.94250 1.30823 1.10597 0.92851 1.25599 0.99009 0.96460 0.96754 1.70013 1.27687 1.38663 1.18704 0.85633 0.80587 0.78118 0.78055 1.19255 1.20957 1.20703 1.22190 0.85703 0.96997 0.98602 0.84935 0.92574 0.91452 0.84045 0.85117 0.74114 0.91364 0.93124 0.92834 0.90601 0.91715 0.95403 0.93017 0.95137 0.91024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 10.56 113.37 1.20 1.76 16 2 O -0.36 -9.29 10.57 -51.39 -0.54 -9.84 16 3 C 0.48 13.85 7.95 71.24 0.57 14.42 16 4 O -0.53 -17.97 15.78 21.99 0.35 -17.62 16 5 C -0.06 -1.66 5.38 29.10 0.16 -1.50 16 6 C -0.16 -4.69 4.43 -19.53 -0.09 -4.78 16 7 C 0.24 6.44 7.32 84.59 0.62 7.06 16 8 Cl 0.00 0.09 27.65 -2.72 -0.08 0.02 16 9 N -0.53 -14.26 10.43 -191.10 -1.99 -16.25 16 10 C 0.33 8.22 12.28 180.90 2.22 10.44 16 11 N -0.56 -16.99 9.41 -197.66 -1.86 -18.85 16 12 C 0.38 12.23 5.57 133.12 0.74 12.98 16 13 N -0.49 -17.38 3.76 -701.49 -2.64 -20.02 16 14 C 0.08 2.72 4.95 86.33 0.43 3.15 16 15 C -0.11 -4.00 6.09 30.65 0.19 -3.81 16 16 C -0.10 -4.73 5.03 30.67 0.15 -4.58 16 17 C 0.06 2.73 2.26 -11.49 -0.03 2.70 16 18 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 19 C -0.53 -27.64 8.56 25.60 0.22 -27.42 16 20 H 0.05 2.73 7.74 -2.91 -0.02 2.71 16 21 C 0.02 1.12 5.31 84.66 0.45 1.57 16 22 N -0.91 -50.28 11.36 21.45 0.24 -50.03 16 23 Si 0.95 41.89 29.54 68.60 2.03 43.91 16 24 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 25 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 26 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 27 C 0.09 3.55 4.33 86.32 0.37 3.92 16 28 H 0.13 1.65 8.14 -2.39 -0.02 1.64 16 29 H 0.06 1.17 8.13 -2.39 -0.02 1.15 16 30 H 0.07 1.20 8.13 -2.39 -0.02 1.18 16 31 H 0.14 2.91 7.07 -2.39 -0.02 2.89 16 32 H 0.13 3.70 6.89 -2.39 -0.02 3.69 16 33 H 0.24 3.73 8.06 -2.91 -0.02 3.71 16 34 H 0.07 2.28 8.10 -2.39 -0.02 2.26 16 35 H 0.05 1.78 7.83 -2.39 -0.02 1.76 16 36 H 0.05 2.07 8.14 -2.38 -0.02 2.05 16 37 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 38 H 0.06 3.32 6.17 -2.38 -0.01 3.31 16 39 H 0.03 1.26 8.14 -2.38 -0.02 1.24 16 40 H 0.26 13.73 8.31 -92.71 -0.77 12.96 16 41 H 0.03 1.25 8.14 -2.38 -0.02 1.23 16 42 H 0.07 2.70 7.73 -2.39 -0.02 2.68 16 Total: -1.00 -63.09 362.85 3.76 -59.34 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: 1.04 Total: 13.42 kcal Atomic # 6 Polarization: 8.71 SS G_CDS: 7.20 Total: 15.91 kcal Atomic # 7 Polarization: -98.90 SS G_CDS: -6.25 Total: -105.15 kcal Atomic # 8 Polarization: -27.26 SS G_CDS: -0.20 Total: -27.46 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.91 kcal Atomic # 17 Polarization: 0.09 SS G_CDS: -0.08 Total: 0.02 kcal Total: -63.09 3.76 -59.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166740372.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.310 kcal (2) G-P(sol) polarization free energy of solvation -63.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds