Wall clock time and date at job start Tue Mar 31 2020 22:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34229 * 116.99754 * 2 1 4 4 O 1.20819 * 120.00345 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99904 * 180.02562 * 3 2 1 6 6 N 1.46906 * 109.51998 * 325.12390 * 5 3 2 7 7 C 1.53119 * 109.52048 * 205.00092 * 5 3 2 8 8 C 1.53037 * 109.27544 * 182.37539 * 7 5 3 9 9 N 1.46842 * 109.51653 * 59.18140 * 8 7 5 10 10 C 1.38412 * 111.00311 * 174.15304 * 9 8 7 11 11 N 1.32742 * 119.43112 * 36.23702 * 10 9 8 12 12 C 1.31472 * 121.73556 * 179.71139 * 11 10 9 13 13 C 1.40795 * 120.38975 * 0.55952 * 12 11 10 14 14 C 1.41195 * 120.56262 * 179.70661 * 13 12 11 15 15 H 1.08000 * 120.00393 * 25.14401 * 14 13 12 16 16 C 1.39868 * 119.99602 * 205.13408 * 14 13 12 17 17 N 1.30905 * 120.00037 * 16.12061 * 16 14 13 18 18 Si 1.86801 * 120.00012 * 196.11914 * 16 14 13 19 19 H 1.48507 * 109.46970 * 60.00375 * 18 16 14 20 20 H 1.48501 * 109.47353 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47385 * 300.00344 * 18 16 14 22 22 C 1.41286 * 118.86936 * 359.72285 * 13 12 11 23 23 C 1.36665 * 118.39698 * 0.02562 * 22 13 12 24 24 Cl 1.73605 * 120.25797 * 180.02562 * 23 22 13 25 25 C 1.46846 * 111.20134 * 298.24173 * 9 8 7 26 26 C 1.53041 * 109.51297 * 61.75646 * 25 9 8 27 27 H 1.09004 * 109.47484 * 299.99639 * 1 2 3 28 28 H 1.09002 * 109.47424 * 60.00114 * 1 2 3 29 29 H 1.09004 * 109.46970 * 180.02562 * 1 2 3 30 30 H 1.00902 * 111.00065 * 59.87683 * 6 5 3 31 31 H 1.00898 * 110.99456 * 183.82758 * 6 5 3 32 32 H 1.08999 * 109.50294 * 62.43769 * 7 5 3 33 33 H 1.09001 * 109.53581 * 302.33297 * 7 5 3 34 34 H 1.09003 * 109.46357 * 179.19587 * 8 7 5 35 35 H 1.09002 * 109.46432 * 299.17235 * 8 7 5 36 36 H 1.08003 * 119.80668 * 180.28488 * 12 11 10 37 37 H 0.97001 * 120.00205 * 179.97438 * 17 16 14 38 38 H 1.07993 * 120.79704 * 179.97438 * 22 13 12 39 39 H 1.09000 * 109.47073 * 301.74459 * 25 9 8 40 40 H 1.08995 * 109.45635 * 181.76125 * 25 9 8 41 41 H 1.08997 * 109.50214 * 180.87899 * 26 25 9 42 42 H 1.08998 * 109.50558 * 60.76091 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 7 4.1163 0.1661 0.7907 7 6 4.0090 2.6078 0.6094 8 6 5.5350 2.7076 0.5520 9 7 5.9804 2.6158 -0.8442 10 6 7.3436 2.8330 -0.9454 11 7 8.1483 2.3847 0.0105 12 6 9.4501 2.5608 -0.0424 13 6 10.0323 3.2494 -1.1237 14 6 11.4293 3.4460 -1.1811 15 1 12.0919 2.7670 -0.6650 16 6 11.9551 4.5200 -1.9065 17 7 11.1784 5.5113 -2.2639 18 14 13.7658 4.5400 -2.3655 19 1 14.0770 3.3542 -3.2037 20 1 14.0700 5.7783 -3.1265 21 1 14.5899 4.5033 -1.1307 22 6 9.1948 3.7406 -2.1501 23 6 7.8489 3.5260 -2.0492 24 17 6.7754 4.1080 -3.2832 25 6 5.6081 1.3247 -1.4366 26 6 4.0842 1.1836 -1.4386 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.8376 -0.7247 0.4074 31 1 5.1208 0.2329 0.8572 32 1 3.6797 2.6602 1.6472 33 1 3.5690 3.4306 0.0459 34 1 5.8527 3.6617 0.9726 35 1 5.9742 1.8927 1.1276 36 1 10.0761 2.1789 0.7505 37 1 11.5431 6.2563 -2.7667 38 1 9.6083 4.2734 -2.9935 39 1 6.0469 0.5165 -0.8515 40 1 5.9788 1.2746 -2.4604 41 1 3.8087 0.2187 -1.8640 42 1 3.6454 1.9835 -2.0349 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166800523.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:18 Heat of formation + Delta-G solvation = -55.641099 kcal Electronic energy + Delta-G solvation = -27493.609083 eV Core-core repulsion = 23499.162588 eV Total energy + Delta-G solvation = -3994.446495 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.96553 -39.52820 -38.05066 -36.51175 -35.46330 -35.02094 -33.70147 -30.92144 -30.61908 -30.17219 -28.91623 -28.10676 -25.86961 -24.26582 -23.20866 -22.11847 -21.47615 -20.75333 -18.83759 -17.64936 -17.63016 -17.29703 -16.57928 -16.38050 -15.76402 -15.36802 -15.14706 -14.63651 -14.56871 -14.31902 -13.93137 -13.69212 -13.35599 -13.04654 -12.91036 -12.62254 -12.39060 -12.23347 -12.05509 -11.85922 -11.75753 -11.53390 -11.37471 -11.14704 -11.02651 -10.93942 -10.90653 -10.81900 -10.59019 -10.43490 -10.23746 -9.87763 -9.54020 -8.90850 -8.63518 -8.34648 -8.07393 -7.44351 -7.03772 -4.69424 2.12116 2.27998 2.59188 2.65901 2.91819 2.93115 2.98711 3.26222 3.70004 4.24415 4.30272 4.34190 4.57019 4.69693 4.86554 4.92920 5.00402 5.22814 5.29567 5.35132 5.44766 5.58439 5.63185 5.73388 5.84127 5.96173 6.04632 6.15227 6.19310 6.28882 6.45244 6.50697 6.55595 6.76750 6.87437 6.89069 6.96636 7.30518 7.42748 7.48252 7.67010 7.67868 7.97424 8.20631 8.42591 8.47138 9.26059 9.84255 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.028313 B = 0.002762 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.713424 B =10136.179065 C =10637.323282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.354 6.354 3 C 0.481 3.519 4 O -0.504 6.504 5 C 0.136 3.864 6 N -0.831 5.831 7 C -0.096 4.096 8 C 0.071 3.929 9 N -0.459 5.459 10 C 0.140 3.860 11 N -0.471 5.471 12 C -0.010 4.010 13 C 0.072 3.928 14 C -0.437 4.437 15 H 0.088 0.912 16 C 0.072 3.928 17 N -0.778 5.778 18 Si 0.917 3.083 19 H -0.261 1.261 20 H -0.276 1.276 21 H -0.262 1.262 22 C -0.131 4.131 23 C -0.015 4.015 24 Cl -0.098 7.098 25 C 0.067 3.933 26 C -0.141 4.141 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.099 0.901 30 H 0.348 0.652 31 H 0.356 0.644 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.052 0.948 36 H 0.133 0.867 37 H 0.289 0.711 38 H 0.138 0.862 39 H 0.035 0.965 40 H 0.080 0.920 41 H 0.073 0.927 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.870 -8.026 0.665 13.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.271 6.271 3 C 0.323 3.677 4 O -0.390 6.390 5 C 0.042 3.958 6 N -0.367 5.367 7 C -0.135 4.135 8 C -0.057 4.057 9 N -0.180 5.180 10 C -0.089 4.089 11 N -0.182 5.182 12 C -0.174 4.174 13 C 0.067 3.933 14 C -0.466 4.466 15 H 0.106 0.894 16 C -0.149 4.149 17 N -0.402 5.402 18 Si 0.740 3.260 19 H -0.185 1.185 20 H -0.200 1.200 21 H -0.186 1.186 22 C -0.157 4.157 23 C -0.045 4.045 24 Cl -0.070 7.070 25 C -0.061 4.061 26 C -0.181 4.181 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.118 0.882 30 H 0.161 0.839 31 H 0.174 0.826 32 H 0.095 0.905 33 H 0.105 0.895 34 H 0.097 0.903 35 H 0.070 0.930 36 H 0.150 0.850 37 H 0.100 0.900 38 H 0.156 0.844 39 H 0.053 0.947 40 H 0.098 0.902 41 H 0.091 0.909 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -12.273 -7.200 1.476 14.306 hybrid contribution 1.732 -0.108 -1.497 2.292 sum -10.541 -7.308 -0.021 12.826 Atomic orbital electron populations 1.23243 0.76812 1.03486 1.02414 1.86515 1.23024 1.33657 1.83870 1.23711 0.91424 0.81247 0.71361 1.90659 1.66663 1.36456 1.45229 1.20704 0.85713 0.95220 0.94212 1.58948 1.17901 1.04427 1.55411 1.21645 0.96598 0.93832 1.01404 1.21880 0.92362 1.02534 0.88937 1.59443 1.10935 1.29841 1.17815 1.18412 0.87915 1.07631 0.94923 1.67119 1.06464 1.17560 1.27025 1.22355 0.89117 1.07373 0.98591 1.18463 0.94338 0.90569 0.89950 1.19541 0.91681 1.09207 1.26199 0.89383 1.26050 1.01254 0.94189 0.93402 1.69792 1.38313 1.05612 1.26441 0.86203 0.81092 0.78873 0.79798 1.18513 1.20034 1.18639 1.21345 0.89781 1.03912 1.00642 1.21072 0.91064 1.01123 0.91267 1.98264 1.66574 1.87798 1.54366 1.22033 0.92939 0.90381 1.00725 1.22363 0.97338 1.03044 0.95313 0.91981 0.92081 0.88243 0.83878 0.82601 0.90517 0.89524 0.90344 0.93030 0.84972 0.90004 0.84397 0.94732 0.90181 0.90882 0.89739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.56 101.05 1.07 1.36 16 2 O -0.35 -4.13 9.92 -39.26 -0.39 -4.52 16 3 C 0.48 6.59 6.82 36.01 0.25 6.83 16 4 O -0.50 -8.09 15.80 -18.74 -0.30 -8.39 16 5 C 0.14 1.78 0.91 -132.63 -0.12 1.66 16 6 N -0.83 -9.75 8.70 -0.09 0.00 -9.75 16 7 C -0.10 -1.40 4.65 -26.65 -0.12 -1.53 16 8 C 0.07 1.16 4.67 -3.84 -0.02 1.15 16 9 N -0.46 -8.21 3.99 -173.12 -0.69 -8.90 16 10 C 0.14 2.97 5.56 -155.06 -0.86 2.11 16 11 N -0.47 -10.31 9.19 -11.75 -0.11 -10.42 16 12 C -0.01 -0.23 10.97 -16.74 -0.18 -0.42 16 13 C 0.07 1.73 5.58 -106.65 -0.60 1.14 16 14 C -0.44 -10.30 9.07 -37.85 -0.34 -10.64 16 15 H 0.09 1.94 7.89 -52.49 -0.41 1.53 16 16 C 0.07 1.62 5.19 -17.34 -0.09 1.53 16 17 N -0.78 -18.39 10.93 55.54 0.61 -17.78 16 18 Si 0.92 16.86 29.59 -169.99 -5.03 11.83 16 19 H -0.26 -4.77 7.11 56.52 0.40 -4.37 16 20 H -0.28 -4.99 7.11 56.52 0.40 -4.59 16 21 H -0.26 -4.76 7.11 56.52 0.40 -4.36 16 22 C -0.13 -3.13 8.51 -38.99 -0.33 -3.47 16 23 C -0.01 -0.33 6.32 -39.57 -0.25 -0.58 16 24 Cl -0.10 -1.95 28.43 -51.86 -1.47 -3.43 16 25 C 0.07 1.03 5.16 -3.83 -0.02 1.01 16 26 C -0.14 -1.82 5.04 -26.65 -0.13 -1.96 16 27 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 28 H 0.06 0.52 8.13 -51.93 -0.42 0.09 16 29 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.35 3.54 8.54 -39.29 -0.34 3.21 16 31 H 0.36 4.39 5.60 -39.29 -0.22 4.17 16 32 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.09 1.36 7.79 -51.93 -0.40 0.95 16 34 H 0.08 1.41 8.10 -51.93 -0.42 0.99 16 35 H 0.05 0.86 6.28 -51.93 -0.33 0.53 16 36 H 0.13 2.75 8.06 -52.48 -0.42 2.33 16 37 H 0.29 6.23 8.30 -40.82 -0.34 5.89 16 38 H 0.14 3.44 6.24 -52.49 -0.33 3.11 16 39 H 0.03 0.53 6.83 -51.93 -0.35 0.17 16 40 H 0.08 1.30 8.10 -51.93 -0.42 0.88 16 41 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 357.44 15.07 5.39 5.39 Total: -1.00 -26.14 357.44 -9.07 -35.21 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: -5.32 Total: 12.58 kcal Atomic # 6 Polarization: -0.05 SS G_CDS: -1.76 Total: -1.81 kcal Atomic # 7 Polarization: -46.66 SS G_CDS: -0.19 Total: -46.85 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: -0.69 Total: -12.91 kcal Atomic # 14 Polarization: 16.86 SS G_CDS: -5.03 Total: 11.83 kcal Atomic # 17 Polarization: -1.95 SS G_CDS: -1.47 Total: -3.43 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -26.14 -9.07 -35.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166800523.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.429 kcal (2) G-P(sol) polarization free energy of solvation -26.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds