Wall clock time and date at job start Tue Mar 31 2020 22:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34229 * 116.99754 * 2 1 4 4 O 1.20819 * 120.00345 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99904 * 180.02562 * 3 2 1 6 6 N 1.46906 * 109.51998 * 325.12390 * 5 3 2 7 7 C 1.53119 * 109.52048 * 205.00092 * 5 3 2 8 8 C 1.53037 * 109.27544 * 182.37539 * 7 5 3 9 9 N 1.46842 * 109.51653 * 59.18140 * 8 7 5 10 10 C 1.38412 * 111.00311 * 174.15304 * 9 8 7 11 11 N 1.32742 * 119.43112 * 36.23702 * 10 9 8 12 12 C 1.31472 * 121.73556 * 179.71139 * 11 10 9 13 13 C 1.40795 * 120.38975 * 0.55952 * 12 11 10 14 14 C 1.41195 * 120.56262 * 179.70661 * 13 12 11 15 15 H 1.08000 * 120.00393 * 25.14401 * 14 13 12 16 16 C 1.39868 * 119.99602 * 205.13408 * 14 13 12 17 17 N 1.30905 * 120.00037 * 16.12061 * 16 14 13 18 18 Si 1.86801 * 120.00012 * 196.11914 * 16 14 13 19 19 H 1.48507 * 109.46970 * 60.00375 * 18 16 14 20 20 H 1.48501 * 109.47353 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47385 * 300.00344 * 18 16 14 22 22 C 1.41286 * 118.86936 * 359.72285 * 13 12 11 23 23 C 1.36665 * 118.39698 * 0.02562 * 22 13 12 24 24 Cl 1.73605 * 120.25797 * 180.02562 * 23 22 13 25 25 C 1.46846 * 111.20134 * 298.24173 * 9 8 7 26 26 C 1.53041 * 109.51297 * 61.75646 * 25 9 8 27 27 H 1.09004 * 109.47484 * 299.99639 * 1 2 3 28 28 H 1.09002 * 109.47424 * 60.00114 * 1 2 3 29 29 H 1.09004 * 109.46970 * 180.02562 * 1 2 3 30 30 H 1.00902 * 111.00065 * 59.87683 * 6 5 3 31 31 H 1.00898 * 110.99456 * 183.82758 * 6 5 3 32 32 H 1.08999 * 109.50294 * 62.43769 * 7 5 3 33 33 H 1.09001 * 109.53581 * 302.33297 * 7 5 3 34 34 H 1.09003 * 109.46357 * 179.19587 * 8 7 5 35 35 H 1.09002 * 109.46432 * 299.17235 * 8 7 5 36 36 H 1.08003 * 119.80668 * 180.28488 * 12 11 10 37 37 H 0.97001 * 120.00205 * 179.97438 * 17 16 14 38 38 H 1.07993 * 120.79704 * 179.97438 * 22 13 12 39 39 H 1.09000 * 109.47073 * 301.74459 * 25 9 8 40 40 H 1.08995 * 109.45635 * 181.76125 * 25 9 8 41 41 H 1.08997 * 109.50214 * 180.87899 * 26 25 9 42 42 H 1.08998 * 109.50558 * 60.76091 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 7 4.1163 0.1661 0.7907 7 6 4.0090 2.6078 0.6094 8 6 5.5350 2.7076 0.5520 9 7 5.9804 2.6158 -0.8442 10 6 7.3436 2.8330 -0.9454 11 7 8.1483 2.3847 0.0105 12 6 9.4501 2.5608 -0.0424 13 6 10.0323 3.2494 -1.1237 14 6 11.4293 3.4460 -1.1811 15 1 12.0919 2.7670 -0.6650 16 6 11.9551 4.5200 -1.9065 17 7 11.1784 5.5113 -2.2639 18 14 13.7658 4.5400 -2.3655 19 1 14.0770 3.3542 -3.2037 20 1 14.0700 5.7783 -3.1265 21 1 14.5899 4.5033 -1.1307 22 6 9.1948 3.7406 -2.1501 23 6 7.8489 3.5260 -2.0492 24 17 6.7754 4.1080 -3.2832 25 6 5.6081 1.3247 -1.4366 26 6 4.0842 1.1836 -1.4386 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.8376 -0.7247 0.4074 31 1 5.1208 0.2329 0.8572 32 1 3.6797 2.6602 1.6472 33 1 3.5690 3.4306 0.0459 34 1 5.8527 3.6617 0.9726 35 1 5.9742 1.8927 1.1276 36 1 10.0761 2.1789 0.7505 37 1 11.5431 6.2563 -2.7667 38 1 9.6083 4.2734 -2.9935 39 1 6.0469 0.5165 -0.8515 40 1 5.9788 1.2746 -2.4604 41 1 3.8087 0.2187 -1.8640 42 1 3.6454 1.9835 -2.0349 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166800523.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:18 Heat of formation + Delta-G solvation = -70.616681 kcal Electronic energy + Delta-G solvation = -27494.258473 eV Core-core repulsion = 23499.162588 eV Total energy + Delta-G solvation = -3995.095885 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.07534 -40.97185 -39.46188 -37.55490 -37.15076 -36.49981 -35.23899 -32.48840 -32.04113 -31.64077 -30.24562 -28.97021 -27.30653 -25.68131 -24.52735 -23.65635 -23.01319 -22.09811 -20.03163 -19.38691 -18.71410 -18.40700 -17.90876 -17.42948 -17.41155 -16.84487 -16.30635 -16.02926 -15.91739 -15.70804 -15.14304 -14.92406 -14.54494 -14.37147 -14.31096 -13.94606 -13.82853 -13.67812 -13.36189 -13.22871 -13.06330 -12.91233 -12.76295 -12.62392 -12.44919 -12.34834 -12.24306 -12.01035 -11.80934 -11.79005 -11.59076 -11.36184 -11.19683 -10.32843 -10.10583 -9.87719 -9.70437 -9.09005 -8.72204 -6.47671 0.55092 0.87225 1.05931 1.40930 1.48933 1.53270 1.54964 1.66104 2.16658 2.59415 2.87027 3.29689 3.46252 3.53209 3.58409 3.81641 4.03366 4.17526 4.26810 4.30724 4.32556 4.34019 4.50170 4.55395 4.61943 4.69708 4.71335 4.76266 4.83623 4.95570 4.99046 5.04579 5.13396 5.19889 5.27918 5.31436 5.72682 5.80083 5.90974 6.10879 6.24266 6.41407 6.49974 6.66577 6.67862 6.75487 7.49623 8.17606 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.028313 B = 0.002762 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.713424 B =10136.179065 C =10637.323282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.352 6.352 3 C 0.484 3.516 4 O -0.532 6.532 5 C 0.141 3.859 6 N -0.826 5.826 7 C -0.088 4.088 8 C 0.078 3.922 9 N -0.465 5.465 10 C 0.147 3.853 11 N -0.472 5.472 12 C -0.019 4.019 13 C 0.048 3.952 14 C -0.464 4.464 15 H 0.096 0.904 16 C 0.035 3.965 17 N -0.812 5.812 18 Si 0.988 3.012 19 H -0.258 1.258 20 H -0.271 1.271 21 H -0.255 1.255 22 C -0.146 4.146 23 C -0.028 4.028 24 Cl -0.079 7.079 25 C 0.070 3.930 26 C -0.131 4.131 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.134 0.866 30 H 0.359 0.641 31 H 0.355 0.645 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.059 0.941 35 H 0.053 0.947 36 H 0.147 0.853 37 H 0.294 0.706 38 H 0.123 0.877 39 H 0.041 0.959 40 H 0.071 0.929 41 H 0.100 0.900 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.494 -9.547 0.704 14.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.268 6.268 3 C 0.327 3.673 4 O -0.421 6.421 5 C 0.046 3.954 6 N -0.363 5.363 7 C -0.127 4.127 8 C -0.050 4.050 9 N -0.188 5.188 10 C -0.082 4.082 11 N -0.183 5.183 12 C -0.182 4.182 13 C 0.043 3.957 14 C -0.492 4.492 15 H 0.114 0.886 16 C -0.183 4.183 17 N -0.436 5.436 18 Si 0.808 3.192 19 H -0.182 1.182 20 H -0.195 1.195 21 H -0.179 1.179 22 C -0.173 4.173 23 C -0.058 4.058 24 Cl -0.051 7.051 25 C -0.057 4.057 26 C -0.170 4.170 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.152 0.848 30 H 0.175 0.825 31 H 0.172 0.828 32 H 0.100 0.900 33 H 0.092 0.908 34 H 0.077 0.923 35 H 0.071 0.929 36 H 0.164 0.836 37 H 0.105 0.895 38 H 0.141 0.859 39 H 0.059 0.941 40 H 0.090 0.910 41 H 0.119 0.881 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -12.921 -8.757 1.523 15.683 hybrid contribution 1.737 0.323 -1.496 2.315 sum -11.184 -8.434 0.027 14.007 Atomic orbital electron populations 1.23570 0.74917 1.05793 1.02377 1.86495 1.24813 1.32256 1.83199 1.23664 0.91428 0.81445 0.70722 1.90654 1.67260 1.37489 1.46656 1.20530 0.85901 0.94808 0.94168 1.58897 1.17657 1.04609 1.55124 1.21506 0.94809 0.94613 1.01739 1.21799 0.93694 1.01527 0.87948 1.59452 1.08811 1.31666 1.18828 1.18727 0.89260 1.06163 0.94030 1.67208 1.06217 1.17693 1.27208 1.22609 0.89667 1.07277 0.98669 1.18753 0.95082 0.91384 0.90526 1.19835 0.91804 1.10082 1.27502 0.88597 1.26886 1.05471 0.93293 0.92645 1.69850 1.40315 1.06325 1.27135 0.85142 0.75620 0.78893 0.79576 1.18190 1.19542 1.17930 1.21290 0.90660 1.04772 1.00582 1.21222 0.91063 1.01243 0.92306 1.98256 1.65744 1.87579 1.53529 1.22030 0.94689 0.89022 0.99975 1.22294 0.95174 1.04239 0.95342 0.92219 0.92009 0.84797 0.82530 0.82805 0.89977 0.90751 0.92274 0.92878 0.83563 0.89460 0.85878 0.94104 0.91039 0.88119 0.90653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.56 113.37 1.20 1.58 16 2 O -0.35 -7.26 9.92 -51.41 -0.51 -7.77 16 3 C 0.48 12.36 6.82 71.24 0.49 12.84 16 4 O -0.53 -16.47 15.80 21.98 0.35 -16.12 16 5 C 0.14 3.42 0.91 2.86 0.00 3.42 16 6 N -0.83 -17.46 8.70 -154.20 -1.34 -18.80 16 7 C -0.09 -2.49 4.65 30.65 0.14 -2.35 16 8 C 0.08 2.53 4.67 86.33 0.40 2.93 16 9 N -0.47 -16.45 3.99 -701.62 -2.80 -19.25 16 10 C 0.15 6.27 5.56 133.32 0.74 7.02 16 11 N -0.47 -20.69 9.19 -191.08 -1.76 -22.45 16 12 C -0.02 -0.86 10.97 85.37 0.94 0.07 16 13 C 0.05 2.35 5.58 -21.18 -0.12 2.23 16 14 C -0.46 -22.15 9.07 23.39 0.21 -21.94 16 15 H 0.10 4.26 7.89 -2.91 -0.02 4.23 16 16 C 0.03 1.57 5.19 85.23 0.44 2.01 16 17 N -0.81 -39.14 10.93 21.82 0.24 -38.90 16 18 Si 0.99 34.30 29.59 68.60 2.03 36.33 16 19 H -0.26 -8.76 7.11 99.48 0.71 -8.05 16 20 H -0.27 -9.10 7.11 99.48 0.71 -8.40 16 21 H -0.26 -8.53 7.11 99.48 0.71 -7.83 16 22 C -0.15 -7.22 8.51 22.65 0.19 -7.03 16 23 C -0.03 -1.26 6.32 22.28 0.14 -1.12 16 24 Cl -0.08 -3.16 28.43 -2.72 -0.08 -3.24 16 25 C 0.07 2.05 5.16 86.33 0.45 2.50 16 26 C -0.13 -3.13 5.04 30.65 0.15 -2.97 16 27 H 0.06 0.92 8.13 -2.38 -0.02 0.90 16 28 H 0.06 0.91 8.13 -2.39 -0.02 0.89 16 29 H 0.13 1.02 8.14 -2.38 -0.02 1.00 16 30 H 0.36 6.24 8.54 -89.69 -0.77 5.48 16 31 H 0.35 7.99 5.60 -89.70 -0.50 7.49 16 32 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 33 H 0.07 2.30 7.79 -2.39 -0.02 2.28 16 34 H 0.06 2.14 8.10 -2.39 -0.02 2.12 16 35 H 0.05 1.72 6.28 -2.39 -0.01 1.70 16 36 H 0.15 6.10 8.06 -2.91 -0.02 6.08 16 37 H 0.29 12.90 8.30 -92.71 -0.77 12.13 16 38 H 0.12 6.37 6.24 -2.91 -0.02 6.35 16 39 H 0.04 1.17 6.83 -2.39 -0.02 1.15 16 40 H 0.07 2.24 8.10 -2.39 -0.02 2.22 16 41 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 42 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -56.52 357.44 1.33 -55.20 By element: Atomic # 1 Polarization: 35.99 SS G_CDS: -0.19 Total: 35.80 kcal Atomic # 6 Polarization: -6.18 SS G_CDS: 5.38 Total: -0.80 kcal Atomic # 7 Polarization: -93.74 SS G_CDS: -5.66 Total: -99.40 kcal Atomic # 8 Polarization: -23.73 SS G_CDS: -0.16 Total: -23.89 kcal Atomic # 14 Polarization: 34.30 SS G_CDS: 2.03 Total: 36.33 kcal Atomic # 17 Polarization: -3.16 SS G_CDS: -0.08 Total: -3.24 kcal Total: -56.52 1.33 -55.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166800523.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.418 kcal (2) G-P(sol) polarization free energy of solvation -56.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds