Wall clock time and date at job start Tue Mar 31 2020 22:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34220 * 116.99913 * 2 1 4 4 O 1.20820 * 120.00497 * 359.97438 * 3 2 1 5 5 C 1.50712 * 120.00031 * 179.97438 * 3 2 1 6 6 H 1.09000 * 109.46559 * 59.99942 * 5 3 2 7 7 C 1.52996 * 109.47086 * 179.97438 * 5 3 2 8 8 C 1.53002 * 109.46972 * 180.02562 * 7 5 3 9 9 C 1.52997 * 109.46817 * 299.99733 * 8 7 5 10 10 H 1.09001 * 109.47502 * 300.00518 * 9 8 7 11 11 N 1.46500 * 109.47007 * 180.02562 * 9 8 7 12 12 C 1.38538 * 120.00019 * 85.00295 * 11 9 8 13 13 C 1.40035 * 120.45089 * 359.72179 * 12 11 9 14 14 C 1.38801 * 118.59289 * 179.75352 * 13 12 11 15 15 Cl 1.73608 * 120.33684 * 180.23750 * 14 13 12 16 16 N 1.32203 * 119.32515 * 0.52483 * 14 13 12 17 17 C 1.33414 * 120.86135 * 359.71520 * 16 14 13 18 18 C 1.41568 * 119.24004 * 180.02562 * 17 16 14 19 19 H 1.08004 * 120.00382 * 180.02562 * 18 17 16 20 20 C 1.40060 * 119.99891 * 0.02562 * 18 17 16 21 21 N 1.30691 * 119.99563 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 120.00165 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46823 * 89.99723 * 22 20 18 24 24 H 1.48491 * 109.47102 * 209.99979 * 22 20 18 25 25 H 1.48499 * 109.46729 * 330.00371 * 22 20 18 26 26 N 1.32572 * 120.44753 * 180.02562 * 12 11 9 27 27 C 1.53006 * 109.47127 * 60.00361 * 9 8 7 28 28 C 1.52997 * 109.46964 * 299.99785 * 5 3 2 29 29 H 1.09002 * 109.47620 * 300.00184 * 1 2 3 30 30 H 1.09004 * 109.47430 * 60.00623 * 1 2 3 31 31 H 1.09003 * 109.47279 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47452 * 59.99790 * 7 5 3 33 33 H 1.09000 * 109.47054 * 299.99950 * 7 5 3 34 34 H 1.09002 * 109.47070 * 179.97438 * 8 7 5 35 35 H 1.08996 * 109.47407 * 59.99513 * 8 7 5 36 36 H 0.97002 * 120.00030 * 265.00025 * 11 9 8 37 37 H 1.08006 * 120.70518 * 0.02562 * 13 12 11 38 38 H 0.97004 * 119.99370 * 179.97438 * 21 20 18 39 39 H 1.08993 * 109.46955 * 60.00011 * 27 9 8 40 40 H 1.09000 * 109.47050 * 179.97438 * 27 9 8 41 41 H 1.09002 * 109.47153 * 60.00001 * 28 5 3 42 42 H 1.08993 * 109.47194 * 300.00289 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1959 0.0000 4 8 1.4033 2.2092 -0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9563 0.7805 -0.8892 7 6 4.0001 2.7420 -0.0002 8 6 5.5280 2.8221 -0.0002 9 6 6.0750 2.1292 1.2494 10 1 5.6852 2.6238 2.1391 11 7 7.5380 2.2064 1.2497 12 6 8.1723 3.3289 1.7565 13 6 7.4242 4.3977 2.2655 14 6 8.0995 5.5012 2.7684 15 17 7.2173 6.8489 3.4161 16 7 9.4212 5.5179 2.7440 17 6 10.1096 4.4881 2.2486 18 6 11.5243 4.5421 2.2399 19 1 12.0938 3.7155 1.8414 20 6 12.1852 5.6675 2.7479 21 7 11.4960 6.6680 3.2296 22 14 14.0519 5.7386 2.7371 23 1 14.5166 6.3478 1.4650 24 1 14.5226 6.5606 3.8806 25 1 14.6002 4.3637 2.8567 26 7 9.4956 3.4084 1.7607 27 6 5.6412 0.6619 1.2502 28 6 4.1129 0.5816 1.2502 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5137 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 3.6100 3.2367 0.8892 33 1 3.6107 3.2355 -0.8907 34 1 5.8371 3.8674 -0.0012 35 1 5.9178 2.3275 -0.8899 36 1 8.0625 1.4715 0.8951 37 1 6.3448 4.3623 2.2706 38 1 11.9538 7.4473 3.5818 39 1 6.0310 0.1674 0.3605 40 1 6.0313 0.1682 2.1402 41 1 3.8038 -0.4637 1.2503 42 1 3.7227 1.0758 2.1398 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167827717.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:02 Heat of formation + Delta-G solvation = -60.175670 kcal Electronic energy + Delta-G solvation = -26595.824138 eV Core-core repulsion = 22601.181009 eV Total energy + Delta-G solvation = -3994.643128 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.95657 -39.34575 -38.35424 -36.72360 -35.60871 -34.99299 -33.43822 -31.53177 -30.99155 -30.34649 -28.78472 -27.61664 -26.39397 -23.79761 -22.95922 -22.06083 -21.65007 -20.71693 -19.93898 -17.96548 -17.78106 -17.03789 -16.79828 -16.49359 -16.02877 -15.20947 -14.87755 -14.49250 -14.36710 -14.18761 -13.74985 -13.71196 -13.45052 -13.27700 -13.05060 -12.79733 -12.63340 -12.42295 -12.34711 -11.73844 -11.47823 -11.38478 -11.36173 -11.24850 -11.20397 -11.09323 -10.81927 -10.70919 -10.49460 -10.39640 -10.33674 -10.17318 -9.87781 -9.11439 -9.00253 -8.26006 -7.48009 -7.15235 -6.56492 -4.79748 1.95286 2.43600 2.53317 2.97818 2.99040 3.05842 3.09669 3.14330 3.74632 3.89625 4.32628 4.45754 4.54611 4.62304 4.78055 4.85148 4.89665 4.98962 5.05889 5.19930 5.21824 5.31252 5.34220 5.55590 5.65839 5.78373 5.84789 5.88239 5.97417 6.03540 6.10676 6.13999 6.20502 6.31629 6.42880 6.48840 6.84341 6.94506 7.14358 7.48986 7.72997 8.11779 8.21403 8.53708 8.60002 9.06423 10.09471 10.24294 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.022106 B = 0.002438 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.322072 B =11481.055371 C =12438.436558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.360 6.360 3 C 0.464 3.536 4 O -0.505 6.505 5 C -0.079 4.079 6 H 0.110 0.890 7 C -0.101 4.101 8 C -0.134 4.134 9 C 0.160 3.840 10 H 0.082 0.918 11 N -0.725 5.725 12 C 0.457 3.543 13 C -0.406 4.406 14 C 0.269 3.731 15 Cl -0.083 7.083 16 N -0.528 5.528 17 C 0.435 3.565 18 C -0.395 4.395 19 H 0.095 0.905 20 C 0.065 3.935 21 N -0.701 5.701 22 Si 0.919 3.081 23 H -0.267 1.267 24 H -0.275 1.275 25 H -0.259 1.259 26 N -0.642 5.642 27 C -0.123 4.123 28 C -0.105 4.105 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.100 0.900 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.066 0.934 36 H 0.396 0.604 37 H 0.112 0.888 38 H 0.277 0.723 39 H 0.071 0.929 40 H 0.076 0.924 41 H 0.080 0.920 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.980 -11.396 -4.894 19.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.276 6.276 3 C 0.307 3.693 4 O -0.392 6.392 5 C -0.098 4.098 6 H 0.128 0.872 7 C -0.139 4.139 8 C -0.173 4.173 9 C 0.053 3.947 10 H 0.100 0.900 11 N -0.361 5.361 12 C 0.210 3.790 13 C -0.438 4.438 14 C 0.088 3.912 15 Cl -0.055 7.055 16 N -0.249 5.249 17 C 0.199 3.801 18 C -0.430 4.430 19 H 0.114 0.886 20 C -0.163 4.163 21 N -0.322 5.322 22 Si 0.742 3.258 23 H -0.192 1.192 24 H -0.200 1.200 25 H -0.183 1.183 26 N -0.372 5.372 27 C -0.161 4.161 28 C -0.143 4.143 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.119 0.881 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.097 0.903 35 H 0.084 0.916 36 H 0.231 0.769 37 H 0.130 0.870 38 H 0.088 0.912 39 H 0.090 0.910 40 H 0.095 0.905 41 H 0.098 0.902 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -14.357 -10.639 -4.684 18.473 hybrid contribution -0.445 0.083 -0.083 0.461 sum -14.803 -10.556 -4.767 18.795 Atomic orbital electron populations 1.23262 0.76531 1.03625 1.02557 1.86515 1.23294 1.33709 1.84119 1.23970 0.92201 0.81203 0.71968 1.90675 1.67211 1.36373 1.44909 1.21215 0.86268 1.00174 1.02190 0.87194 1.21437 0.95992 0.92580 1.03891 1.22079 0.93584 1.02771 0.98878 1.20808 0.80492 0.95141 0.98231 0.90018 1.44112 1.04260 1.18809 1.68880 1.18133 0.88947 0.85198 0.86740 1.20946 0.99296 0.98432 1.25161 1.21456 0.91567 0.86234 0.91978 1.98297 1.73940 1.47951 1.85340 1.68589 1.03352 1.29280 1.23719 1.19461 0.93820 0.81028 0.85827 1.19348 0.88166 1.02322 1.33134 0.88648 1.26133 1.01295 0.94955 0.93924 1.70153 1.37188 1.03400 1.21486 0.86135 0.81244 0.79631 0.78748 1.19232 1.19985 1.18309 1.68236 1.06980 1.30165 1.31799 1.21786 0.94639 0.96409 1.03313 1.21480 0.95643 1.01090 0.96104 0.91884 0.91971 0.88140 0.90676 0.90880 0.90269 0.91559 0.76872 0.87010 0.91181 0.91024 0.90494 0.90174 0.90973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.56 101.05 1.07 1.29 16 2 O -0.36 -3.31 10.47 -39.23 -0.41 -3.72 16 3 C 0.46 4.90 7.26 36.01 0.26 5.16 16 4 O -0.50 -6.78 15.73 -18.75 -0.29 -7.08 16 5 C -0.08 -0.71 2.63 -91.77 -0.24 -0.95 16 6 H 0.11 0.82 8.14 -51.93 -0.42 0.39 16 7 C -0.10 -1.07 4.49 -26.73 -0.12 -1.19 16 8 C -0.13 -1.60 5.45 -26.73 -0.15 -1.75 16 9 C 0.16 2.03 2.15 -67.93 -0.15 1.88 16 10 H 0.08 1.15 6.51 -51.93 -0.34 0.81 16 11 N -0.73 -11.96 5.23 -53.77 -0.28 -12.24 16 12 C 0.46 10.06 7.69 -154.99 -1.19 8.87 16 13 C -0.41 -8.99 8.74 -38.70 -0.34 -9.33 16 14 C 0.27 6.63 7.33 -17.18 -0.13 6.51 16 15 Cl -0.08 -1.77 29.15 -51.86 -1.51 -3.29 16 16 N -0.53 -14.66 7.86 -9.84 -0.08 -14.73 16 17 C 0.43 12.09 7.37 -158.35 -1.17 10.92 16 18 C -0.39 -10.57 9.37 -37.63 -0.35 -10.92 16 19 H 0.10 2.44 7.85 -52.48 -0.41 2.02 16 20 C 0.06 1.62 5.50 -17.35 -0.10 1.53 16 21 N -0.70 -18.41 11.42 55.55 0.63 -17.77 16 22 Si 0.92 18.26 29.56 -169.99 -5.02 13.23 16 23 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 24 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 25 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 26 N -0.64 -16.41 10.39 -11.90 -0.12 -16.53 16 27 C -0.12 -1.15 5.39 -26.70 -0.14 -1.29 16 28 C -0.10 -0.86 5.14 -26.71 -0.14 -1.00 16 29 H 0.06 0.43 8.13 -51.93 -0.42 0.01 16 30 H 0.06 0.41 8.13 -51.93 -0.42 -0.01 16 31 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.87 8.10 -51.93 -0.42 0.45 16 33 H 0.07 0.78 8.10 -51.93 -0.42 0.36 16 34 H 0.08 1.15 7.72 -51.93 -0.40 0.75 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.40 6.09 8.73 -40.82 -0.36 5.73 16 37 H 0.11 2.19 6.26 -52.48 -0.33 1.86 16 38 H 0.28 6.56 8.29 -40.82 -0.34 6.22 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.08 0.56 8.11 -51.93 -0.42 0.14 16 42 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 364.97 15.07 5.50 5.50 Total: -1.00 -31.54 364.97 -10.08 -41.62 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -5.61 Total: 5.28 kcal Atomic # 6 Polarization: 12.61 SS G_CDS: -2.88 Total: 9.73 kcal Atomic # 7 Polarization: -61.43 SS G_CDS: 0.15 Total: -61.27 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: -0.71 Total: -10.80 kcal Atomic # 14 Polarization: 18.26 SS G_CDS: -5.02 Total: 13.23 kcal Atomic # 17 Polarization: -1.77 SS G_CDS: -1.51 Total: -3.29 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.54 -10.08 -41.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167827717.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.556 kcal (2) G-P(sol) polarization free energy of solvation -31.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds