Wall clock time and date at job start Tue Mar 31 2020 22:06:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34220 * 116.99913 * 2 1 4 4 O 1.20820 * 120.00497 * 359.97438 * 3 2 1 5 5 C 1.50712 * 120.00031 * 179.97438 * 3 2 1 6 6 H 1.09000 * 109.46559 * 59.99942 * 5 3 2 7 7 C 1.52996 * 109.47086 * 179.97438 * 5 3 2 8 8 C 1.53002 * 109.46972 * 180.02562 * 7 5 3 9 9 C 1.52997 * 109.46817 * 299.99733 * 8 7 5 10 10 H 1.09001 * 109.47502 * 300.00518 * 9 8 7 11 11 N 1.46500 * 109.47007 * 180.02562 * 9 8 7 12 12 C 1.38538 * 120.00019 * 85.00295 * 11 9 8 13 13 C 1.40035 * 120.45089 * 359.72179 * 12 11 9 14 14 C 1.38801 * 118.59289 * 179.75352 * 13 12 11 15 15 Cl 1.73608 * 120.33684 * 180.23750 * 14 13 12 16 16 N 1.32203 * 119.32515 * 0.52483 * 14 13 12 17 17 C 1.33414 * 120.86135 * 359.71520 * 16 14 13 18 18 C 1.41568 * 119.24004 * 180.02562 * 17 16 14 19 19 H 1.08004 * 120.00382 * 180.02562 * 18 17 16 20 20 C 1.40060 * 119.99891 * 0.02562 * 18 17 16 21 21 N 1.30691 * 119.99563 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 120.00165 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46823 * 89.99723 * 22 20 18 24 24 H 1.48491 * 109.47102 * 209.99979 * 22 20 18 25 25 H 1.48499 * 109.46729 * 330.00371 * 22 20 18 26 26 N 1.32572 * 120.44753 * 180.02562 * 12 11 9 27 27 C 1.53006 * 109.47127 * 60.00361 * 9 8 7 28 28 C 1.52997 * 109.46964 * 299.99785 * 5 3 2 29 29 H 1.09002 * 109.47620 * 300.00184 * 1 2 3 30 30 H 1.09004 * 109.47430 * 60.00623 * 1 2 3 31 31 H 1.09003 * 109.47279 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47452 * 59.99790 * 7 5 3 33 33 H 1.09000 * 109.47054 * 299.99950 * 7 5 3 34 34 H 1.09002 * 109.47070 * 179.97438 * 8 7 5 35 35 H 1.08996 * 109.47407 * 59.99513 * 8 7 5 36 36 H 0.97002 * 120.00030 * 265.00025 * 11 9 8 37 37 H 1.08006 * 120.70518 * 0.02562 * 13 12 11 38 38 H 0.97004 * 119.99370 * 179.97438 * 21 20 18 39 39 H 1.08993 * 109.46955 * 60.00011 * 27 9 8 40 40 H 1.09000 * 109.47050 * 179.97438 * 27 9 8 41 41 H 1.09002 * 109.47153 * 60.00001 * 28 5 3 42 42 H 1.08993 * 109.47194 * 300.00289 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1959 0.0000 4 8 1.4033 2.2092 -0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9563 0.7805 -0.8892 7 6 4.0001 2.7420 -0.0002 8 6 5.5280 2.8221 -0.0002 9 6 6.0750 2.1292 1.2494 10 1 5.6852 2.6238 2.1391 11 7 7.5380 2.2064 1.2497 12 6 8.1723 3.3289 1.7565 13 6 7.4242 4.3977 2.2655 14 6 8.0995 5.5012 2.7684 15 17 7.2173 6.8489 3.4161 16 7 9.4212 5.5179 2.7440 17 6 10.1096 4.4881 2.2486 18 6 11.5243 4.5421 2.2399 19 1 12.0938 3.7155 1.8414 20 6 12.1852 5.6675 2.7479 21 7 11.4960 6.6680 3.2296 22 14 14.0519 5.7386 2.7371 23 1 14.5166 6.3478 1.4650 24 1 14.5226 6.5606 3.8806 25 1 14.6002 4.3637 2.8567 26 7 9.4956 3.4084 1.7607 27 6 5.6412 0.6619 1.2502 28 6 4.1129 0.5816 1.2502 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5137 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 3.6100 3.2367 0.8892 33 1 3.6107 3.2355 -0.8907 34 1 5.8371 3.8674 -0.0012 35 1 5.9178 2.3275 -0.8899 36 1 8.0625 1.4715 0.8951 37 1 6.3448 4.3623 2.2706 38 1 11.9538 7.4473 3.5818 39 1 6.0310 0.1674 0.3605 40 1 6.0313 0.1682 2.1402 41 1 3.8038 -0.4637 1.2503 42 1 3.7227 1.0758 2.1398 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167827717.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:06:01 Heat of formation + Delta-G solvation = -78.298294 kcal Electronic energy + Delta-G solvation = -26596.609994 eV Core-core repulsion = 22601.181009 eV Total energy + Delta-G solvation = -3995.428984 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.77379 -40.96652 -39.51449 -37.57500 -37.38032 -36.43323 -35.17989 -33.22380 -31.97120 -31.76115 -30.08097 -28.40018 -28.25632 -24.86252 -24.16523 -23.55810 -23.11550 -21.75304 -20.82182 -19.73712 -18.57092 -18.34833 -17.87111 -17.73474 -17.30664 -16.65906 -16.22135 -15.93115 -15.60409 -15.26918 -15.13406 -14.92694 -14.82264 -14.54952 -14.34000 -13.90522 -13.61974 -13.24766 -13.19884 -13.11792 -13.04337 -12.80180 -12.73902 -12.51416 -12.33572 -12.11364 -12.01478 -11.92866 -11.84935 -11.77579 -11.44192 -11.26913 -11.18777 -10.87874 -10.84621 -10.10243 -9.39806 -8.77003 -8.41772 -6.77423 0.65825 1.15136 1.15709 1.17087 1.43273 1.54808 1.59755 1.75030 2.21155 2.41475 2.76792 3.53204 3.68474 3.76195 3.89431 4.00590 4.15944 4.23373 4.28602 4.33328 4.33933 4.34562 4.42788 4.49873 4.53115 4.63204 4.72293 4.78437 4.84702 4.96454 5.03690 5.11119 5.14020 5.17007 5.17435 5.30917 5.38658 5.39584 5.47172 6.05940 6.20440 6.53448 6.71450 6.71891 6.80264 7.27612 8.22328 8.38640 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.022106 B = 0.002438 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.322072 B =11481.055371 C =12438.436558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.359 6.359 3 C 0.467 3.533 4 O -0.541 6.541 5 C -0.075 4.075 6 H 0.135 0.865 7 C -0.094 4.094 8 C -0.125 4.125 9 C 0.154 3.846 10 H 0.068 0.932 11 N -0.708 5.708 12 C 0.453 3.547 13 C -0.398 4.398 14 C 0.245 3.755 15 Cl -0.062 7.062 16 N -0.564 5.564 17 C 0.408 3.592 18 C -0.427 4.427 19 H 0.096 0.904 20 C 0.023 3.977 21 N -0.740 5.740 22 Si 1.000 3.000 23 H -0.260 1.260 24 H -0.265 1.265 25 H -0.254 1.254 26 N -0.664 5.664 27 C -0.113 4.113 28 C -0.098 4.098 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.132 0.868 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.049 0.951 35 H 0.079 0.921 36 H 0.405 0.595 37 H 0.135 0.865 38 H 0.284 0.716 39 H 0.091 0.909 40 H 0.080 0.920 41 H 0.103 0.897 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.474 -13.471 -5.528 21.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.275 6.275 3 C 0.311 3.689 4 O -0.430 6.430 5 C -0.093 4.093 6 H 0.153 0.847 7 C -0.132 4.132 8 C -0.164 4.164 9 C 0.049 3.951 10 H 0.086 0.914 11 N -0.343 5.343 12 C 0.204 3.796 13 C -0.430 4.430 14 C 0.066 3.934 15 Cl -0.034 7.034 16 N -0.287 5.287 17 C 0.171 3.829 18 C -0.463 4.463 19 H 0.114 0.886 20 C -0.201 4.201 21 N -0.362 5.362 22 Si 0.819 3.181 23 H -0.185 1.185 24 H -0.190 1.190 25 H -0.177 1.177 26 N -0.395 5.395 27 C -0.151 4.151 28 C -0.136 4.136 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.150 0.850 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.068 0.932 35 H 0.098 0.902 36 H 0.241 0.759 37 H 0.152 0.848 38 H 0.095 0.905 39 H 0.110 0.890 40 H 0.099 0.901 41 H 0.121 0.879 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -14.936 -12.763 -5.330 20.356 hybrid contribution -0.537 0.658 0.082 0.853 sum -15.473 -12.105 -5.248 20.334 Atomic orbital electron populations 1.23533 0.75142 1.05667 1.02322 1.86503 1.24673 1.32746 1.83577 1.24202 0.92671 0.81074 0.70924 1.90669 1.68062 1.37579 1.46734 1.21210 0.85482 0.98952 1.03705 0.84740 1.21312 0.94647 0.94107 1.03170 1.21948 0.94583 1.00938 0.98966 1.21097 0.77977 0.97994 0.98026 0.91366 1.44270 1.05841 1.17073 1.67069 1.18474 0.88273 0.86635 0.86182 1.21182 1.00336 0.97703 1.23802 1.21907 0.91476 0.87650 0.92367 1.98284 1.73070 1.46989 1.85035 1.68572 1.04660 1.29999 1.25497 1.19881 0.94756 0.81844 0.86442 1.19687 0.88427 1.03477 1.34681 0.88611 1.27100 1.06512 0.93804 0.92689 1.70240 1.39572 1.04141 1.22207 0.84944 0.74197 0.79862 0.79099 1.18503 1.18969 1.17701 1.68279 1.08574 1.29840 1.32813 1.21724 0.95378 0.93427 1.04539 1.21451 0.94499 1.02260 0.95368 0.92270 0.92157 0.84988 0.92052 0.91116 0.93224 0.90197 0.75926 0.84757 0.90524 0.89012 0.90125 0.87903 0.91605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.56 113.37 1.20 1.50 16 2 O -0.36 -5.69 10.47 -51.32 -0.54 -6.22 16 3 C 0.47 8.97 7.26 71.24 0.52 9.48 16 4 O -0.54 -14.11 15.73 21.98 0.35 -13.77 16 5 C -0.07 -1.14 2.63 -11.54 -0.03 -1.17 16 6 H 0.13 1.46 8.14 -2.39 -0.02 1.44 16 7 C -0.09 -1.87 4.49 30.59 0.14 -1.74 16 8 C -0.13 -2.84 5.45 30.59 0.17 -2.67 16 9 C 0.15 3.66 2.15 44.99 0.10 3.76 16 10 H 0.07 1.84 6.51 -2.39 -0.02 1.82 16 11 N -0.71 -22.55 5.23 -324.02 -1.69 -24.25 16 12 C 0.45 20.03 7.69 133.39 1.03 21.06 16 13 C -0.40 -17.79 8.74 22.84 0.20 -17.59 16 14 C 0.24 12.35 7.33 84.77 0.62 12.97 16 15 Cl -0.06 -2.66 29.15 -2.72 -0.08 -2.74 16 16 N -0.56 -32.35 7.86 -185.03 -1.45 -33.80 16 17 C 0.41 23.45 7.37 135.16 1.00 24.44 16 18 C -0.43 -23.59 9.37 23.53 0.22 -23.37 16 19 H 0.10 5.04 7.85 -2.91 -0.02 5.02 16 20 C 0.02 1.18 5.50 85.30 0.47 1.65 16 21 N -0.74 -39.82 11.42 21.84 0.25 -39.57 16 22 Si 1.00 37.64 29.56 68.60 2.03 39.66 16 23 H -0.26 -9.44 7.11 99.48 0.71 -8.73 16 24 H -0.27 -9.46 7.11 99.48 0.71 -8.76 16 25 H -0.25 -9.19 7.11 99.48 0.71 -8.48 16 26 N -0.66 -34.64 10.39 -191.55 -1.99 -36.63 16 27 C -0.11 -1.74 5.39 30.61 0.17 -1.57 16 28 C -0.10 -1.30 5.14 30.61 0.16 -1.14 16 29 H 0.06 0.72 8.13 -2.39 -0.02 0.70 16 30 H 0.06 0.71 8.13 -2.38 -0.02 0.69 16 31 H 0.13 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.06 1.39 8.10 -2.39 -0.02 1.37 16 33 H 0.07 1.46 8.10 -2.39 -0.02 1.44 16 34 H 0.05 1.43 7.72 -2.39 -0.02 1.41 16 35 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.40 11.75 8.73 -92.71 -0.81 10.94 16 37 H 0.13 5.25 6.26 -2.91 -0.02 5.23 16 38 H 0.28 13.72 8.29 -92.71 -0.77 12.95 16 39 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.10 1.00 8.11 -2.39 -0.02 0.98 16 42 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -71.26 364.97 3.06 -68.20 By element: Atomic # 1 Polarization: 23.27 SS G_CDS: 0.25 Total: 23.52 kcal Atomic # 6 Polarization: 19.66 SS G_CDS: 5.94 Total: 25.60 kcal Atomic # 7 Polarization: -129.36 SS G_CDS: -4.89 Total: -134.25 kcal Atomic # 8 Polarization: -19.80 SS G_CDS: -0.19 Total: -19.99 kcal Atomic # 14 Polarization: 37.64 SS G_CDS: 2.03 Total: 39.66 kcal Atomic # 17 Polarization: -2.66 SS G_CDS: -0.08 Total: -2.74 kcal Total: -71.26 3.06 -68.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167827717.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.096 kcal (2) G-P(sol) polarization free energy of solvation -71.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds